TCONS_00003942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003942
Unique NameTCONS_00003942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003942 ID=TCONS_00003942|Name=TCONS_00003942|organism=Clytia hemisphaerica|type=transcript|length=1866bp
cgaatttcaatcggtcaattgcgttcgatttggttcgactggttcgatcg
tcgattccgttcgattgagatcctCTGGacacaaaaaagtcaaaaaattg
cgaaaaaaaaattcaaaattctttaCCTTTTGTGTGTGTCCAAACATTGA
ATATTCACCATCTATCACTGGAGGTGGCTTCGGAACAGTTCCAGCTTTCA
TATTTTCGTTTGTATANTTAGTGTTTGATTTATTCTAGGGTGTTTTTAAT
TAGGTTGTAGATCAGCTTCTTGAGCATTTTGAAAGTCTTAATTGAGTATC
TTTAAGTGGCAAAGACTAAAAAAACTATAACAGAAAGNAAATAAAATGTT
GGTGGTAGTGGAAATGATAGTTGAGCATCTTCAGCCCCTGCAGCAGCAGC
ATTACCATTTGCGGTCGCCATGTTTGTTTCGCCTTACCTGAAGTTGTTCT
TTAAGTCACAAGATGCGTGCATTTCTTTACCCTAACGCTTGCCAGCTCTC
CCCGAGAGTCTCAAAAAGCGGTCGCGAACAAACGCCGAATCACTTTTCCA
TTTCCATTTCCAAGATGGCGGCGTCCGTAGCTCGTCCGATGAGAAACCTT
TTCAATTACTTGAAGAACGCTTGGGATAGAGAGCCTATTATTGTCGTTTC
GTTTGCTTTCGGTGGCTTTGgttTAGCTGCTTTTACAGCAAGTCCTTATA
CTTATAAGCAAGCTGAGGAGATGAAGAATTGGCCATCAGTTTACAATTAC
TaCAATTTACCAACTACCACTGATCGCTATATGGAAGATATCCCTGATGA
CGTCACACAACGAAAAGTATGGCGCACAGATTACGACGATTAGTATGTct
tctttataatttttatttttttagatattaaTTGTTTTCCATAGTAAAGA
ATGTAAATGTACATATGCTAGAAAATGAGgagaattttgtttttgttttg
ctgAAATAGATTTTCCACTTCACTCCAGAATATTCAATCCAAagtatttt
atttgtaaatcaCTTTGCTATACTCGAAACTTTTTCGGCAatcttatatt
tgaaaaaacgAGCTTGAGATCTCTCCCTAAACGTGAACAGTTTCTGCAAA
TATATCTAAGAATATAAGCAGGTATAGACAcgtaaaaattaatttgaaaa
gtGACTGGGCGTTGGCTTGTGTTCTTGGCGACCAAAACCGTTGCTGAAGC
CATCGCCATTATTAAAACCAAAACGATTTGATTCAACAAATGGCTTTTCG
TCGCCAGGTTTCCGGATAATTCCATACtatgtataatttttttctctgat
tcaaagaaaattttttggtctTAAATGGTTATGGAATCAGAGATAGGGAA
AGCGAAACTGACCTGGATCTGGATAAACCAAAAGCAATCGTTATTGGACT
CATTTGCAAAcaggaataaaataaaatagtttGTACACTTCTAACTTTAA
CTGCATTGTTTATTttaaattatcaattttctttattcTCGATTTTCAAG
TAAAACGAAATGTCACTTttattaataaaatataaatattgtaATATTGT
AATACTGGATATTACAATGTTACATTCCACAATATAAACAAATAACATAA
TTATGTACAcactttcattaaaaaaaaacgtttctcaGTTAGAAATGGAT
ACTGTATGtacaaaaatattacaaaataaaTGACTCCCGATACCAGACTT
AAAGAACCCATTGAACTCTTTTATTCTGGTCAGAGCTTTTAGCACGTGAT
ATGGTCGAACTAAGCTCTTATTGCTTTATTTAAAGGATCATCATTGTTTT
AAGATCAATTCTAAGCCTGAATCCATTTGAATAATTATTCATCATAAAAT
Ggtaataacaattttc
Run BLAST on NCBI

protein sequence of TCONS_00003942-protein

>TCONS_00003942-protein ID=TCONS_00003942-protein|Name=TCONS_00003942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MRAFLYPNACQLSPRVSKSGREQTPNHFSISISKMAASVARPMRNLFNYL
KNAWDREPIIVVSFAFGGFGLAAFTASPYTYKQAEEMKNWPSVYNYYNLP
TTTDRYMEDIPDDVTQRKVWRTDYDD
Run BLAST on NCBI

transcript from alignment at sc0000038:160721..168276-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003942 ID=TCONS_00003942|Name=TCONS_00003942|organism=Clytia hemisphaerica|type=transcript|length=7556bp|location=Sequence derived from alignment at sc0000038:160721..168276- (Clytia hemisphaerica)
CGAATTTCAATCGGTCAATTGCGTTCGATTTGGTTCGACTGGTTCGATCG TCGATTCCGTTCGATTGAGATCCTCTGGACACAAAAAAGTCAAAAAATTG CGAAAAAAAAATTCAAAATTCTTTACCTTTTGTGTGTGTCCAAACATTGA ATATTCACCATCTATCACTGGAGGTGGCTTCGGAACAGTTCCAGCTTTCA TATTTTCGTTTGTATANTTAGTGTTTGATTTATTCTAGGGTGTTTTTAAT TAGGTTGTAGATCAGCTTCTTGAGCATTTTGAAAGTCTTAATTGAGTATC TTTAAGTGGCAAAGACTAAAAAAACTATAACAGAAAGNAAATAAAATGTT GGTGGTAGTGGAAATGATAGTTGAGCATCTTCAGCCCCTGCAGCAGCAGC ATTACCATTTGCGGTCGCCATGTTTGTTTCGCCTTACCTGAAGTTGTTCT TTAAGTCACAAGATGCGTGCATTTCTTTACCCTAACGCTTGCCAGCTCTC CCCGAGAGTCTCAAAAAGCGGTCGCGAACAAACGCCGAATCACTTTTCCA TTTCCATTTCCAAGATGGCGGCGTCCGTAGCTCGTCCGATGAGAAACCTT TTCAATTACTTGAAGAACGCTTGGGATAGAGAGCCTATTATTGTCGTTTC GTTTGCTTTCGGTGGCTTTGGTAAGTCATGTTTATTTTCTTTTTATATAT TTCAAAGATGAATTTGGAATAAACTGCAACATAACATACAAAAGGCTCTG CGGTTGATGCCACGCAAAGTTTTCACTTTCTTTCTGCTTCTGTCGCTGCT GGTCTTTCCGTCAGTCAGCAGGGAAAAATCGTCCAAGAAATTGCCAACTC ACATTCTATCATGTAAAAATTCTTTAAGCTGGAGATATGAGGGAGGTCAG TCGAAATTTCAAACTCCTTTTGGGCCATCCAAGAAAATTTTTGTTACCCT GTCGGACAACGTGCACTTTTTAATTTTTTCTAGCCTCAGAAATAATTTTT CTTTTCCAGTGGTGTGGTCTGAAATATCAATGAAAATCCATGTACTTTTG CAAGATGCATCGGAAATCCCATTCGTTTTTGCCTTTTTTTAAGGCGGGCA TCACAAATAACTTGTGTTCGCGTCGTCCGACCGGCTGATGATTTTTCCTA ATTTTCCGACTTTTTTGAGTTGGAAAGTTGGAAAAACGTCAGATTTTTAT AAGTATAATATAGTCCCAGCTTTATCCCACTTTTAGTGAACCTTCCNGTT AATTTTTTATCATTTTTTTGTCATCACTTTAGGTGTTAATAAGTTGTCTT GATTTGATCGTTGTGACACAGGACCTCAACAGTGTTAAATATTTATCAAT TTTTGAAGATAACATATCCACTGATATTTGTCAACATTCACTATGTTCAA ATAATTGATAAAAGTTTAACACATGGTATCAATGTCCACAAGTAGGCCAA AATTGGTCTCATATTATTGATCGTGTCCGTAACTCTCATCCTTGTTGTTG AAATGTATCCTGTAGATTTGACTGATGTTTTTTCTGAAAGCTAGATTTCC TAGTGTGACTAACTGTTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATT GTGTTCGATTGTGTTCGATCGTCGATTCATTGACCCCGGATTGTTCACGG AATCGACGATCGAACCAGTCGAACAACAATCGAACCAATCGTATATTANT CATCTTCACAGGATCGATTCTCAACAACAAAATACATCTTTTGGTCTTTG GATTTGTTTCTGACGTTTTTCCTTCAAAGAATATCGATCACATTCCTTTT TCCCTCGAGCACGCGAGAAAAAAATGATTAGCTCGCTTTCTCGCGCGGGC GAAAAAAGATGAGGCGGCAATCTTGCACTGAGAGAGTGTTACTTAGTTTC CGCCCTATTTTGCGCCCACAATATAATGGTCCAAATACGGGGGTATTCCA AATGATAAACAATGTCGTTCTGTAAGTGTTTATTTTCTAAGAGATACAGA CAGTATATTGAATATTATTAACTTATTTATTTAAGTATCTATGAGCCCAA AAATTTTAATATCTGGTTAAATAAAAAACAAACGATATCAGTTCTGTTTT TCCTCAAACCCCCGGGAAAAGTTTTTTGGCCGACTTAGCTATTTTACAAA TTTCGGAAAAGAACTCCCATAGGAATTCCGATACATAACGAAAAGAAAAA AGATAACAGGTATAGCTTTTTCTAATCCTGGAATATCGAGGTTCCAGCTA CACTGTCCGGGAGGTCGTCAGTAATCCGACACTTTCTAGTCCGACAGTAT AAATGTCCGAAGTTTGGTTTGACGAATGCGTCAGTATTCCGACAACAATT TTGTCCGACAACAAGTAAAAAAAAAACATATAAAAAACGTAATATGAATC GCAGAAGAGGAGGCACATTTTTTTCTATAAATCCAAAGTTCCGATTTTGA GGTTACTCTCGGGTACCTAATAGCCGGGGGGNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATAAAAATGTC CTGGGTGGAAAATGTTCGAAAAGGAGGCTGATACAGCAGAATTAGGGCAA AAGAGGGAACTTCTAAATTTTTTTTCCCAAAAATCAATAAGCGGGGGGGT TGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATTAGCGGG CCCCCCCCCGGCTATTAGGTACCCGAGAGTAGGCANNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCTTTATTTCTAATTATGT CAAAATTCCGCCAAAATCAACTTTTATTAATATTATCTCAGTGAAAAACC CTTATTCAACATTTGACACTCAAAAATCCTTCGTTTTCGGACAAAAGTGA CGTCGGAAAAAAAGACTTCCAAATTTTAAATTTATTTTATAGATTCGGAC TAGAAAGTGTCGGACTAGTGACATGCACCCCACTGTCCTATACCTTTTGT CCTTCAGAAAAGCCAAAAACATTAGCCTTAATCCTTTGCTTGCAGCTCTT GTGGCTTTTCAATTAGAGATACCACTTTTCTTGCTGCCATCTTGAATTTA TGTCACTNTGATTTTAAGGTTTTTTCCTCTCTTCTCTCATTTACTTTGAT TAGTATAGGCTTCTTCAATGTTTTGGGAAGGTAAGTTTATAAAAGTTATT TGTTTTTCGGAATGACTCTAGCGTAGCTTTTCAAATTTCTGATAGATTTG ATTTTCGCCCAACTCATGGTTTGAAAATCCNTGGACTAGAGAAAGTGAAA GTGAAATCGCACGATCTAATTGGATGAAAAAATTATTGTGTGAACTGGGG CTGAATATAATTCTCATTTTAAATTCAAGATGGCAGCAAGAAAAGTACGT CTTTTTGNTTTCCGACGTTTTTTTTGCCGACCGACCGACCGACTCGTTTT TTAGACCTAAAAACGACGCGAACACAAGTTATTTGTGATGCCCGCCTAAT TCAATTGCCTTGGAAATTCATACATTTTCTTCTTTCGCCTGGGAAATTTT GAATTTTGGTTAAACCTTTTGCCCCTCCGTAATCCTGTGTCTTCCGCCCC CCCCTGTTACAGACAAATTCTGGAATGGCCCATTCCATTTTGAAGTTCCA TTTTTTGGAGTTTTTGTACAAAAGCCTCCCACCATCTTGTAACCTCTCCA TAGCACTGAAATCGAAAGTGTTTTACAAAAAAATCATTGCGGGAAGTTTG GGACGAGTGTGTTTTTCCGTAGCGCAAGCTACAAACAGGGGTCACCATAC CATTAACTTCCCCTTAGCACTTTCCACCCGAAGCTATTTGATTAAAGATT TTTTCAGATTTAGAATGAAAAAACATGTATCTTGTTAAAATGTTATCGTT GGTTAAAAAATATTGTAGATTTTTAAAGGAAAAATTTGCATTTTTAAGTG CATATTTTAACTTCCTGAAAAAAGTAGAACGCTCTAGTCAGCCAACATGG TACGTTTCAAAAGCTAAACTGGATTAGTTTTTATGTTATTATAACTCCTT AAATAGGTTTTGCATATTTCCCTATGAAACCTTACTACAGCAAATTCTCT ACCATTCCCGCTATTTTTCATAAAAGGCTTCTACTTCCTGCAAAATAAGA TTTCACCAAAATTGGTCCAACTGGGCATGGGACAGAACTTGGGATTTTGG TCCCCCAGAAAATAAAACATCTTTGTAAACNCAACTGGGCATGGGACAGA TTTTGGTCCCCCAGAAAATGAAACATCTTTGTAAATAATTACGCAAGCAA ATCAAGCAAGAAAATTTTTGGGTATTTTTTGTTATTTTGGCTAAAAATTA AATGCTACTTCTCAGGTGTAAAACAGCAAAGGGACACCAAAATTAGTAGT CAAAGGCACCTTTTTGCACCCCATGTCTTTCAACTGCTTCAAAAAATCGG CAACAGGGGGGGGGGGAGTTGCCACCAAGCTAATGCACTTTTCTAGCAAA AAAGGCCAGGACTCTGGGTAGTTGAAAAATGAGCTTCAGAAAGTTAGGAA GTTTCGTAAGTAAACACTAGATTTTCTGTACCTTTAGAAAAAAGCATTTC CAATTTCATGCAGGTCGAATCTTGGCATTCAAAAATTTTCCAGAAATGTC AGCGGAATCTTAGTCTAAGAAACAACAGTGTATCTGCATTTAATCAAAGA TGGTGGATGGTGGAAAGGGGAATGGTCTATAGACATTTTACTAGTTAGGA TGTTGTGTTAAATAATTTGAAAAACCCTAGCATTAAAACAATGAAACAAT ATTTGCATAATTATTTCAACTGTGCATTAATTTTTTCGTATCATTATTTT GGTGCTGGAGTTTTTAATTATTCAACATGAAATCCTTAGCTAAAGGCCTA TTTGGAAGGTTGGAAATACTGATTGAAACTTTATTTCTCTGTTTTAAGCA ACCTTCTTATAAAGAAGGTTGATAAAATAAGATAGGGTTGTTGACATTGG ATCATCTTCAATCTTCATTACAGTAATCTGCCAAAGTCATTTGATATTTA ATAGTTTTATCATAATATTAATATTATAAGTCAATGTGTTAGAAAATCAG AACGTTTGGAACTAAGATTTCCTTATTTCTTTTTTAGGTTTAGCTGCTTT TACAGCAAGTCCTTATACTTATAAGCAAGCTGAGGAGATGAAGAATTGGC CATCAGTTTACAATTACTGTAAGTTCTACTAATTTTAAATTTGCTAAGGT TCACTGTTCTTTTTATTTTTCTACTTAAAGATGACTTGTTTTTCTTCACA TTTTATTCTGTTCTCCATTCGTCTATAGTCTAGTTACTAGATAGAGTTTT GTCTTGAAAGGGATGGATGCTACCTATTTGGACTTAGTCCATTAACTCAA ACAGCTAACTTCTTTAGTTCCAGGTTCTGTCTGGGAGACCTTTTCATACC CCTATTTATTAAAATCTAATTGGTTTAAAATACCCAAATCTTGATCCGAA ACTGTTATAGCTAGAATGAAAAGAGTTCCTTTTTACATTTTTCCAAAGTC TTCTGAATAAAAATGTTTAGACAAAGGTTTATTTAAAGGATTGTCCTATG ATATACGATTTTAATGTGTTTTTTTTATTCAGACAATTTACCAACTACCA CTGATCGCTATATGGAAGATATCCCTGATGACGTCACACAACGAAAAGTA TGGCGCACAGATTACGACGATTAGTATGTCTTCTTTATAATTTTTATTTT TTTAGATATTAATTGTTTTCCATAGTAAAGAATGTAAATGTACATATGCT AGAAAATGAGGAGAATTTTGTTTTTGTTTTGCTGAAATAGATTTTCCACT TCACTCCAGAATATTCAATCCAAAGTATTTTATTTGTAAATCACTTTGCT ATACTCGAAATTTTTTCGGCAATCTTNTTTTTTTTATTCAGACAATTTAC CAACTACCACTGATCGCTACATGGAAGATATCCCTGATGACGTCACACAA CGAAAAGTATGGCGCACAGATTACGACGATTAGTATGTCTTCTTTATAAT TTTTATTTTTTTAGATATTAATTGTTTTCCATAGTAAAGAATGTAAATGT ACATATGCTAGAAAATGAGGAGAATTTTGTTTTTGTTTTGCTGAAATAGA TTTTCCACTTCACTCCAGAATATTCAATCCAAAGTATTTTATTTGTAAAT CACTTTGCTATACTCGAAACTTTTTCGGCAATCTTATATTTGAAAAAACG AGCTTGAGATCTCTCCCTAAACGTGAACAGTTTCTGCAAATATATCTAAG AATATAAGCAGGTATAGACACGTAAAAATTAATTTGAAAAGTGACTGGGC GTTGGCTTGTGTTCTTGGCGACCAAAACCGTTGCTGAAGCCATCGCCATT ATTAAAACCAAAACGATTTGATTCAACAAATGGCTTTTCGTCGCCAGGTT TCCGGATAATTCCATACTATGTATAATTTTTTTCTCTGATTCAAAGAAAA TTTTTTGGTCTTAAATGGTTATGGAATCAGAGATAGGGAAAGCGAAACTG ACCTGGATCTGGATAAACCAAAAGCAATCGTTATTGGACTCATTTGCAAA CAGGAATAAAATAAAATAGTTTGTACACTTCTAACTTTAACTGCATTGTT TATTTTAAATTATCAATTTTCTTTATTCTCGATTTTCAAGTAAAACGAAA TGTCACTTTTATTAATAAAATATAAATATTGTAATATTGTAATACTGGAT ATTACAATGTTACATTCCACAATATAAACAAATAACATAATTATGTACAC ACTTTCATTAAAAAAAAACGTTTCTCAGTTAGAAATGGATACTGTATGTA CAAAAATATTACAAAATAAATGACTCCCGATACCAGACTTAAAGAACCCA TTGAACTCTTTTATTCTGGTCAGAGCTTTTAGCACGTGATATGGTCGAAC TAAGCTCTTATTGCTTTATTTAAAGGATCATCATTGTTTTAAGATCAATT CTAAGCCTGAATCCATTTGAATAATTATTCATCATAAAATGGTAATAACA ATTTTC

Coding sequence (CDS) from alignment at sc0000038:160721..168276-

>TCONS_00003942 ID=TCONS_00003942|Name=TCONS_00003942|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000038:160721..168276- (Clytia hemisphaerica)
ATGGAAGATATCCCTGATGACGTCACACAACGAAAAGTATGGCGCACAGA
TTACGACGATTAGACAATTTACCAACTACCACTGATCGCTATGTTTAGCT
GCTTTTACAGCAAGTCCTTATACTTATAAGCAAGCTGAGGAGATGAAGAA
TTGGCCATCAGTTTACAATTACTATGCGTGCATTTCTTTACCCTAACGCT
TGCCAGCTCTCCCCGAGAGTCTCAAAAAGCGGTCGCGAACAAACGCCGAA
TCACTTTTCCATTTCCATTTCCAAGATGGCGGCGTCCGTAGCTCGTCCGA
TGAGAAACCTTTTCAATTACTTGAAGAACGCTTGGGATAGAGAGCCTATT
ATTGTCGTTTCGTTTGCTTTCGGTGGCTTTGATGGAAGATATCCCTGATG
ACGTCACACAACGAAAAGTATGGCGCACAGATTACGACGATTAGACAATT
TACCAACTACCACTGATCGCTATGTTTAGCTGCTTTTACAGCAAGTCCTT
ATACTTATAAGCAAGCTGAGGAGATGAAGAATTGGCCATCAGTTTACAAT
TACTATGCGTGCATTTCTTTACCCTAACGCTTGCCAGCTCTCCCCGAGAG
TCTCAAAAAGCGGTCGCGAACAAACGCCGAATCACTTTTCCATTTCCATT
TCCAAGATGGCGGCGTCCGTAGCTCGTCCGATGAGAAACCTTTTCAATTA
CTTGAAGAACGCTTGGGATAGAGAGCCTATTATTGTCGTTTCGTTTGCTT
TCGGTGGCTTTGATGGAAGATATCCCTGATGACGTCACACAACGAAAAGT
ATGGCGCACAGATTACGACGATTAGACAATTTACCAACTACCACTGATCG
CTATGTTTAGCTGCTTTTACAGCAAGTCCTTATACTTATAAGCAAGCTGA
GGAGATGAAGAATTGGCCATCAGTTTACAATTACTATGCGTGCATTTCTT
TACCCTAACGCTTGCCAGCTCTCCCCGAGAGTCTCAAAAAGCGGTCGCGA
ACAAACGCCGAATCACTTTTCCATTTCCATTTCCAAGATGGCGGCGTCCG
TAGCTCGTCCGATGAGAAACCTTTTCAATTACTTGAAGAACGCTTGGGAT
AGAGAGCCTATTATTGTCGTTTCGTTTGCTTTCGGTGGCTTTGATGGAAG
ATATCCCTGATGACGTCACACAACGAAAAGTATGGCGCACAGATTACGAC
GATTAGACAATTTACCAACTACCACTGATCGCTATGTTTAGCTGCTTTTA
CAGCAAGTCCTTATACTTATAAGCAAGCTGAGGAGATGAAGAATTGGCCA
TCAGTTTACAATTACTATGCGTGCATTTCTTTACCCTAACGCTTGCCAGC
TCTCCCCGAGAGTCTCAAAAAGCGGTCGCGAACAAACGCCGAATCACTTT
TCCATTTCCATTTCCAAGATGGCGGCGTCCGTAGCTCGTCCGATGAGAAA
CCTTTTCAATTACTTGAAGAACGCTTGGGATAGAGAGCCTATTATTGTCG
TTTCGTTTGCTTTCGGTGGCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002203XLOC_002203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003942-exon-sc0000038-1575043694:167607..168276TCONS_00003942-exon-sc0000038-1575043694:167607..168276Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1575043694:162559..162639TCONS_00003942-exon-sc0000038-1575043694:162559..162639Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1575043694:162116..162144TCONS_00003942-exon-sc0000038-1575043694:162116..162144Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1575043694:160721..161806TCONS_00003942-exon-sc0000038-1575043694:160721..161806Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1510915933:167607..168276TCONS_00003942-exon-sc0000038-1510915933:167607..168276Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1510915933:162559..162639TCONS_00003942-exon-sc0000038-1510915933:162559..162639Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1510915933:162116..162144TCONS_00003942-exon-sc0000038-1510915933:162116..162144Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1510915933:160721..161806TCONS_00003942-exon-sc0000038-1510915933:160721..161806Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1491911889:167607..168276TCONS_00003942-exon-sc0000038-1491911889:167607..168276Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1491911889:162559..162639TCONS_00003942-exon-sc0000038-1491911889:162559..162639Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1491911889:162116..162144TCONS_00003942-exon-sc0000038-1491911889:162116..162144Clytia hemisphaericaexon
TCONS_00003942-exon-sc0000038-1491911889:160721..161806TCONS_00003942-exon-sc0000038-1491911889:160721..161806Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003942-proteinTCONS_00003942-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:160721..168276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.7817 29.9635 34.0082 35.8595 15.835 11.7633 11.5017 13.3086 16.4405 14.3908 11.1411 13.9174 9.51164 10.0095 9.24636 8.92663 22.2832 21.2943 6.29006 6.42981 18.8467 17.6573 18.83 16.4227 15.2395 12.3366 13.0881 10.2364 10.9805 11.1403
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026626NDUFA3
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0005747mitochondrial respiratory chain complex I
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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