|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003946 ID=TCONS_00003946|Name=TCONS_00003946|organism=Clytia hemisphaerica|type=transcript|length=3411bp ccaagccatgtaCTCGTTCGTTTTACTGCgttttatggaaattttgtACA GATTACAGTAAATACATggtttgtcagatagtcccaagttagagcagttg aggGTACAGGATATTACAATTTCCCCATATCTCGCTCTCACGCAATTgac atattttcaattaaattcaGTTTAGATGCAATTTTCTGAGAACATCACTG AGAAACGATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTT TCTCGTCATTTAGATTGAATCATActagaaaattattaaagttaACAATG AATGACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGT TTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAA TTGCTCTTCACACCAGGCACTATACCAACCCTGATCAACAAAAATACATT GTTCGAGTGTTGCTGATTGTACCTTTCTATGCTCTGGATTCATGGCTCAG CATGTTGTTCTTTGAAAAGAATTATTACATCTATTTTGATACTATTCGCG ACTGTTACGAAGCATTTGTCATCTACAATTTCTTATGTTTATGTTATGAA TATCTTGGAGGTGAAATGGCCATTTTATCTGAAATACGTGGAAAGGTCTT GAAGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAATAA ACATTGCATTTCTCAGAGCATGTAAAAAGgcCACACTGCAGTTTTGTTTC ACCAAACCCATAATGGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAA TTATTCAGATGGCGATTTCAGaccaGACAAAGGATATCTCTACATCACAA TCATATACAATATTTCTTACACCATCGCATTATACGGTCTCTTCTTGTTT TACAACGCGACCAAAGATTTGTTGACACCTTATTATCCCGTGCTCAAATT CTTAACGGTCAAATTCATTGTCTTCATGTCCTTCTGGCAAGGTTTTGTGT TGGCGATCATTGAGAAATGCGGTATGATTACTACCTATCATGAAATCGAG GCTGGAACAATCTCTGCCGGTTATCAAAACTTCATTCTGTGTATAGAGAT GTTTTTCGCTGCCGTCATGCTACGATTCGCTTTTCCTTACCAAGTGTACC GTGTACAGAATCACAGGCTAATTGACCGTGatagtttgaaagaaatttcg tCCAATTTACGACGTAGTATTAATCCCAAAGACATTTTACAAGACACTAT TCATAATTTCGCTCCTGCCTACCAACAATACGCGGGTGTAAATAAAGCGA AAGACGTTCAAGTAACCATCGCGGATGACGGTCGAGAAACGGTCAGTTAT CAGGTAACAATACCGCACTCCGCCCGTGACGATTATGATAGCGATTCTGC TAGTGGGGGAGAGCGAGTTTCCATTGGCAACAAGGGTGTTTTTAAACAAC AGAACGACCGTTTTCGAACGATTGATGGACACTCTCCTTCGCTTTTGTTG GATACGGATGATGATAAAGTGAACTTGTTAGGTTGAGCATGGATTGGAAG AATCGTTTTGGAgataaaatttcactttttgcaGTTTTCACGAATACAAG AACCACTTCAAGACGATGCCACTTTGTCATTATACTTTGCTTCTTCAAAC TCTCGACTCTTTTTGAAGACCAATTTATAGTACCTGAAGGAAACTTTTTT TGGCGAGAATTATTTTAGGCGaattggcgaattttggcaaaatttaccAA AACTCGTTCTCGCTAAAAAAAATGTCATGATTTTCTAAAGAAACCCCCAA TTTTAGTTCAAAACacccatttttaggcaaaaaagaaatcaatttaCCCT GCCATAATCGCCGAATTTAGTTTTTGTCAATAGTATCTTCCTTAAGATAA TTTGGAGTCGTTGATAAGTTAAAAGGCATTTACTTCACCGATGAAGTTTC CTCCTGATTGTACTGTTGGTGTCAAAATATGAACAAAAGCTCCGGCAAAT TGTATCCAAGAAAGCTGGTATAACaacatgaaaaatgaaaataatacgAG TTCTTTGAAATGTTATTGGGAATTCAATTTCGATTTGTCACAAATGCTAT CAAAGGACAAATGACTCTTTAGATGGATAATTNCAATTGCGATTTGTCAC AAATACTATCAAAAAACAAATGActctttaaagggataatcagatggttt gtactatttggcatgtgggatccttttattgtcctgagcaaaatctaaaa atatttttgcctaactattttccaaagtcgagatatttaagttacaaatt tttggcttttaggatgaaaacaatagaacttcaacgtaagaaccgtgtaa gatcccattttaaaaatttcaaattttaatatctcgattttggaaaattg ttacacaaaaatactttgaggttttactaAGGACTGTAGAAGGTTTCTGt aatctaaatatctcaaacatctgattatccctttaactgTAGTGGTCATC ACAGGAAGCACGTAAGCTGATATGACCTTTCTTAAATGTTATTCTTTAAA GTAGTTAGTTGAAAGATTGCTTGTAAATATTATTGTGTCTTATTTAAATA TTACGCACACTAAAccataaaattatgaaaattaaatgattttaaatatt tttaaactgaTTGCAattattattgattttttataCATTTCTTTGACGGA GGTTGTCTGCACACAAACCCCactatctacggctaatttcaacaTTCTTT ACCGTAGAGAGTCTGtcgtcattgtcttttctcatttgagatttttcaaa acgaccgctgcgatggagtgtttaTGAGAGAGAGGAGACGACAAGAGAAG TGTtgttatttataaatcatacttcatcgcagaggtctccgtacgggaat ttttttattaaacagacaatgcacacagagtgtactacgaagcgataaac cgtgagatacactctggtatagAATATGACGGAGTAGGTTTTAGATTAGT TCTCTGCTTTGACTTCGTGTAATTTTCACATGTTTCAGTgtcatgaaaaa aaaagaatagccTTTTTAACTAATTGGTAATATTCCActcttaaataaat tttcaacaagcacaaaatcagAATTTAGGTTAATCACTTGAGAATTTTGG TTTaagattttattgaaaacaatTTGAACTTGAATTTGTTTAAACTTTTC TGAATCTTTCCCTAGTGAGGGAAATTTgactgaaaacttttttaacaaaa tatttcCTGTTATCTTTTATATTCATTTATATTTATTGTACAGAATATAT TACCAAGTCTTAGTTCAAAATATTGTTGttcaatttttattattttggga taaatttttattttgttgtataCTTTTACTTTGCTTTGTTAGAAGATGTA TGAAACACATT Run BLAST on NCBI protein sequence of TCONS_00003946-protein >TCONS_00003946-protein ID=TCONS_00003946-protein|Name=TCONS_00003946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MYFFDCLLQAHTFPFSSFRLNHTRKLLKLTMNDSHIGKLFFQTAGAHVLS GFFAWAAILITGHQIALHTRHYTNPDQQKYIVRVLLIVPFYALDSWLSML FFEKNYYIYFDTIRDCYEAFVIYNFLCLCYEYLGGEMAILSEIRGKVLKT SYFTCTCCFSGRQINIAFLRACKKATLQFCFTKPIMAAITLVLVATRNYS DGDFRPDKGYLYITIIYNISYTIALYGLFLFYNATKDLLTPYYPVLKFLT VKFIVFMSFWQGFVLAIIEKCGMITTYHEIEAGTISAGYQNFILCIEMFF AAVMLRFAFPYQVYRVQNHRLIDRDSLKEISSNLRRSINPKDILQDTIHN FAPAYQQYAGVNKAKDVQVTIADDGRETVSYQVTIPHSARDDYDSDSASG GERVSIGNKGVFKQQNDRFRTIDGHSPSLLLDTDDDKVNLLG Run BLAST on NCBI transcript from alignment at sc0000038:460575..467008- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003946 ID=TCONS_00003946|Name=TCONS_00003946|organism=Clytia hemisphaerica|type=transcript|length=6434bp|location=Sequence derived from alignment at sc0000038:460575..467008- (Clytia hemisphaerica) CCAAGCCATGTACTCGTTCGTTTTACTGCGTTTTATGGAAATTTTGTACA
GATTACAGTAAATACATGGTTTGTCAGATAGTCCCAAGTTAGAGCAGTTG
AGGGTACAGGATATTACAATTTCCCCATATCTCGCTCTCACGCAATTGAC
ATATTTTCAATTAAATTCAGTTTAGATGCAATTTTCTGAGAACATCACTG
AGAAACGATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTT
TCTCGTCATTTAGATTGAATCATACTAGAAAATTATTAAAGTTAACAATG
AATGACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGT
TTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAG
TAAGTATTTATTAGCTTATTTCCCATTTAGAAATTTAATTTAATTTCTTA
AAGGTCTGGGGCCACTTTTTTGAAATAAAAAATCTTTCATAAAAAATTTA
TCAACAGTTTATGTCAAGAATTCTCTGAGACGGGTGGGCTACTTGAATCA
AAGTTTGGCATTCGAACACCCCAACTTCTTTATGTATATCATTTTGATGA
AATTTGTTTTAAGTGGCCCGAGACCTTTAGGTTAAAAATTGTCGATTCAT
TAATTTGAGAGACTCGTGAAATGCAATGAGAAATAATATTATTTTTGACT
GTTTGCCACAAGCTCACACTTCCTTTCTCATTATTTAAAATTGAATCATA
CTAGAAAATTATTAAAAGTGAACAATGAATACAGTAGTGTAACTGCGTGC
AGAATCTGGATTTCATGAGCATGACTTTATTTTAAAGAATCATCCATAGT
GTTAAAAGTTGTCTCAGTGGAGTAGGCTACATGATTTACCAAAATTTCAA
GAACATGTCGTGCTAATTTGCTGTATAAAATCCATTTTCATCTTAGACGA
AAAATCTTGTTTTGGCCACTACACTCAGTTTTCTCCTTTTTCGAGAATGT
TGGATTGGTTTGATTTATATATTTAGAAAAATTCAAGAAAAATAGAAAAA
TCTGTGTATAGTTATAAAAATATTGGTGTTATTTTATGTTTTATTTTTAT
TTTGTTTAGTACTTTCAACACTTCCCTTTCTTGAGGTCAAATCTCTTATC
ATCACCATATCTATGATTTTCTTGTTTAGATTGCTCTTCACACCAGGCAC
TATACCAACCCTGATCAACAAAAATACATTGTTCGAGTGTTGCTGATTGT
ACCTTTCTATGCTCTGGATTCATGGCTCAGCATGTTGTTCTTTGAAAAGA
ATTATTACATCTATTTTGATACTATTCGCGACTGTTACGAAGGTATAAGG
TCTAAATAATAAGGTTGAATAAAGAATTCTAAACTGCACGATGTCTAAAT
ACTACTACACACTCTAACATTTTAGCATGCTCTAAGCTCTAGTTTGGACG
ATCAACTGTTTGCCCTGCCTAATCTAATGATTAAGTGAGAAGAAAGTTGG
CAGTTAAAATAAAGAAGTCAGTGCTCTGATGTCAAAAGAGGGCATTGACT
TTAGACATTCCACTTTCTGCCCAATTTAATTCAGAATTAGAATTGGAATC
TAGATATGGCAATCTAAACAAGATCTCAGTAATTTGGCACTTGTTCGATG
GCTGGTATATATGGGCCTATGTTCCTTATTTTTTTGGTTCAATCTGCCTT
TGTTGAATTCGACTTAAAATCAGGATAACGAAAATCTTAATGTTTTTAAA
GCCCAATATTTTCATTGAACTTTCAGACTTGTTCTATCCGGTTTATGAAA
TTAATCATGAAAGTATGCCAAAATATGTCTCTGCAGGCAAACCATTCTTC
TCTGATGTTAAATCAATTTATATAAATGTTTCTTTTCAGCATTTGTCATC
TACAATTTCTTATGTTTATGTTATGAATATCTTGGAGGTGAAATGGCCAT
TTTATCTGAAATACGTGGAAAGGTCTTGAAGTAAGTTTTTGCACCCTGTA
ACCTATTTTTGGAAAAATCTTTCACCAAAAGTCCCCCTGTGGGGCTACAG
AAGGTACAAAATTCCGGAATACTGGTAAATATTGCATGAAGTACTGCACA
AAATAATAATAATAATTCACACTATCAATTAACAAAATGACTGCAAAAGA
GTTAAAACTGTTTTCAAAGTATTTGTTTTCAATGTCTTTTTTATTCAATG
GCTTAATGGCATATCAGCTGTAGATAAAGTTTTATTTTCCTGGATTTACT
TGACTTTAATAATCATCACAATATTAATAATTTTATAAATGACTTTTTAG
TTATTGCTATTTTCCCTTCCCAGCCAGTCCCAGCCATTCTAATTCGCGTC
GCAAATGCCGACATAAATTTGGCTATTGCCGACGTAAAAGTGCTTACTGT
ACTATAGAACCCAGAATTATTTTGCCGACGCAAATCAATCTGAATTAGAA
AGGCTGCTTCCCTTCAATTTTCTCAAACGTGCTTTTTACTTCTGAAATTT
TTCAGGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAAT
AAACATTGCATTTCTCAGAGCATGTAAAAAGGTATGACGGTGTTATAATG
TTTTTTTATTTGTGCTAATAACTGAGCTAATAATAATAATAATAACATAT
ATTTTAAGTGGCGTACTCCGCTGCCTTTTAGAATTGTTTCCACAAAGGGC
CACTATGAATAGAACAAGAACTGGGAATGCATTTATTCTTAAAGGTTTTA
TTTTTACATAAATGTTCCTGTTTCATTCATATCAGACACATATTTCATAT
CAGGACAGTGTCTGTCTATTGTTATATCATGCTGGTATAAGCAAAAACTC
TTTTTGACCAATCTTGCTCCACACCCGTGTCAATCCAATGTGAAAAAGCT
TGTGAATTAAAATTGATGAGTAAACAAACGATATCACTTATTTAAAACCA
AAACCTTTAAAGTTGTTAAGTTATTTGAAATATAAATTACCCCTTGGCGC
TGTTAGGGCTGATATTTGTTTATTATAAATTTTTCCTTGTTTTGAATTAT
TATACTGAAGGCAAAACCTATCGTATTTAAAGCTTCAGATAACAACATTT
TTTCAAGTGAGAAATATGAAGCTCTTTCTATATTTCTAAGAATCGTATAT
TCTTCTTTTTTTCAGGCCACACTGCAGTTTTGTTTCACCAAACCCATAAT
GGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAATTATTCAGATGGCG
ATTTCAGGTAATTCTGGGGAGTGATTTTCCGGAATGTCTTTTATTCATGT
TATGTGATTTTCGATTTTCTGATTGGGAATTTTTCATGACACAAAGCTAA
TGATTCCCCTGGATTCCCTCTTGTAGACCCGTAAATTTCAACACTTTCTC
CAATATAACTTTTCTGATATGATATAACTGATTTTCGGAATGTCTTTTAT
TCATGTTATGTGATTTTCGATTTTCTGATGATTGAGAATTTTTCATGACA
CAAAGCTAATGATTCCCCTGGATTCCCTTTTGTAGACCCGTAAATTTCAA
CACTTTCTCCAGTATAACTTTATTGTTCTTTTTTTTTCAGACCAGACAAA
GGATATCTCTACATCACAATCATATACAATATTTCTTACACCATCGCATT
ATACGGTCTCTTCTTGTTTTACAACGCGACCAAAGATTTGTTGACACCTT
ATTATCCCGTGCTCAAATTCTTAACGGTCAAATTCATTGTCTTCATGTCC
TTCTGGCAAGGTTTGTAAATTATTGTTTTTTTTGTCGTTTTTTTTCGATT
TATCAGATTTGATTTCTAAGTTTATTGGAAAATCTCTCATGGGTCATGTA
TAAATTCCTAAAAGACATGGTTCCGGTCCCAAACTACAATACTATCAAAA
ATCAAATTTTATCAATAGCCCAATTCTTTGTAATAATCAAGTCTTCGTCT
TAGGCTATCAGCAGATTTCGAGTTTTAACTCTTTTTGCTTAACTTGCTTT
TTTGACTCCTTCAGGTTTTGTGTTGGCGATCATTGAGAAATGCGGTATGA
TTACTACCTATCATGAAATCGAGGCTGGAACAATCTCTGCCGGTTATCAA
AACTTCATTCTGTGTATAGAGATGTTTTTCGCTGCCGTCATGCTACGATT
CGCTTTTCCTTACCAAGTGTACCGTGTACAGAATCACAGGCTAATTGACC
GTGATAGTTTGAAAGAAATTTCGTCCAATTTACGACGTAGTATTAATCCC
AAAGACATTTTACAAGACACTATTCATAATTTCGCTCCTGCCTACCAACA
ATACGCGGGTGTAAATAAAGCGAAAGACGTTCAAGTAACCATCGCGGATG
ACGGTCGAGAAACGGTCAGTTATCAGGTAACAATACCGCACTCCGCCCGT
GACGATTATGATAGCGATTCTGCTAGTGGGGGAGAGCGAGTTTCCATTGG
CAACAAGGGTGTTTTTAAACAACAGAACGACCGTTTTCGAACGATTGATG
GACACTCTCCTTCGCTTTTGTTGGATACGGATGATGATAAAGTGAACTTG
TTAGGTTGAGCATGGATTGGAAGAATCGTTTTGGAGATAAAATTTCACTT
TTTGCAGTTTTCACGAATACAAGAACCACTTCAAGACGATGCCACTTTGT
CATTATACTTTGCTTCTTCAAACTCTCGACTCTTTTTGAAGACCAATTTA
TAGTACCTGAAGGAAACTTTTTTTGGCGAGAATTATTTTAGGCGAATTGG
CGAATTTTGGCAAAATTTACCAAAACTCGTTCTCGCTAAAAAAAATGTCA
TGATTTTCTAAAGAAACCCCCAATTTTAGTTCAAAACACCCATTTTTAGG
CAAAAAAGAAATCAATTTACCCTGCCATAATCGCCGAATTTAGTTTTTGT
CAATAGTATCTTCCTTAAGATAATTTGGAGTCGTTGATAAGTTAAAAGGC
ATTTACTTCACCGATGAAGTTTCCTCCTGATTGTACTGTTGGTGTCAAAA
TATGAACAAAAGCTCCGGCAAATTGTATCCAAGAAAGCTGGTATAACAAC
ATGAAAAATGAAAATAATACGAGTTCTTTGAAATGTTATTGGGAATTCAA
TTTCGATTTGTCACAAATGCTATCAAAGGACAAATGACTCTTTAGATGGA
TAATTNCAATTGCGATTTGTCACAAATACTATCAAAAAACAAATGACTCT
TTAAAGGGATAATCAGATGGTTTGTACTATTTGGCATGTGGGATCCTTTT
ATTGTCCTGAGCAAAATCTAAAAATATTTTTGCCTAACTATTTTCCAAAG
TCGAGATATTTAAGTTACAAATTTTTGGCTTTTAGGATGAAAACAATAGA
ACTTCAACGTAAGAACCGTGTAAGATCCCATTTTAAAAATTTCAAATTTT
AATATCTCGATTTTGGAAAATTGTTACACAAAAATACTTTGAGGTTTTAC
TAAGGACTGTAGAAGGTTTCTGTAATCTAAATATCTCAAACATCTGATTA
TCCCTTTAACTGTAGTGGTCATCACAGGAAGCACGTAAGCTGATATGACC
TTTCTTAAATGTTATTCTTTAAAGTAGTTAGTTGAAAGATTGCTTGTAAA
TATTATTGTGTCTTATTTAAATATTACGCACACTAAACCATAAAATTATG
AAAATTAAATGATTTTAAATATTTTTAAACTGATTGCAATTATTATTGAT
TTTTTATACATTTCTTTGACGGAGGTTGTCTGCACACAAACCCCACTATC
TACGGCTAATTTCAACATTCTTTACCGTAGAGAGTCTGTCGTCATTGTCT
TTTCTCATTTGAGATTTTTCAAAACGACCGCTGCGATGGAGTGTTTATGA
GAGAGAGGAGACGACAAGAGAAGTGTTGTTATTTATAAATCATACTTCAT
CGCAGAGGTCTCCGTACGGGAATTTTTTTATTAAACAGACAATGCACACA
GAGTGTACTACGAAGCGATAAACCGTGAGATACACTCTGGTATAGAATAT
GACGGAGTAGGTTTTAGATTAGTTCTCTGCTTTGACTTCGTGTAATTTTC
ACATGTTTCAGTGTCATGAAAAAAAAAGAATAGCCTTTTTAACTAATTGG
TAATATTCCACTCTTAAATAAATTTTCAACAAGCACAAAATCAGAATTTA
GGTTAATCACTTGAGAATTTTGGTTTAAGATTTTATTGAAAACAATTTGA
ACTTGAATTTGTTTAAACTTTTCTGAATCTTTCCCTAGTGAGGGAAATTT
GACTGAAAACTTTTTTAACAAAATATTTCCTGTTATCTTTTATATTCATT
TATATTTATTGTACAGAATATATTACCAAGTCTTAGTTCAAAATATTGTT
GTTCAATTTTTATTATTTTGGGATAAATTTTTATTTTGTTGTATACTTTT
ACTTTGCTTTGTTAGAAGATGTATGAAACACATT Coding sequence (CDS) from alignment at sc0000038:460575..467008- >TCONS_00003946 ID=TCONS_00003946|Name=TCONS_00003946|organism=Clytia hemisphaerica|type=CDS|length=9303bp|location=Sequence derived from alignment at sc0000038:460575..467008- (Clytia hemisphaerica) GTTTTGTGTTGGCGATCATTGAGAAATGCGGTATGATTACTACCTATCAT GAAATCGAGGCTGGAACAATCTCTGCCGGTTATCAAAACTTCATTCTGTG TATAGAGATGTTTTTCGCTGCCGTCATGCTACGATTCGCTTTTCCTTACC AAGTGTACCGTGTACAGAATCACAGGCTAATTGACCGTGATAGTTTGAAA GAAATTTCGTCCAATTTACGACGTAGTATTAATCCCAAAGACATTTTACA AGACACTATTCATAATTTCGCTCCTGCCTACCAACAATACGCGGGTGTAA ATAAAGCGAAAGACGTTCAAGTAACCATCGCGGATGACGGTCGAGAAACG GTCAGTTATCAGGTAACAATACCGCACTCCGCCCGTGACGATTATGATAG CGATTCTGCTAGTGGGGGAGAGCGAGTTTCCATTGGCAACAAGGGTGTTT TTAAACAACAGAACGACCGTTTTCGAACGATTGATGGACACTCTCCTTCG CTTTTGTTGGATACGGATGATGATAAAGTGAACTTGTTAGGTTGAACCAG ACAAAGGATATCTCTACATCACAATCATATACAATATTTCTTACACCATC GCATTATACGGTCTCTTCTTGTTTTACAACGCGACCAAAGATTTGTTGAC ACCTTATTATCCCGTGCTCAAATTCTTAACGGTCAAATTCATTGTCTTCA TGTCCTTCTGGCAAGGCCACACTGCAGTTTTGTTTCACCAAACCCATAAT GGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAATTATTCAGATGGCG ATTTCAGGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAA ATAAACATTGCATTTCTCAGAGCATGTAAAAAGCATTTGTCATCTACAAT TTCTTATGTTTATGTTATGAATATCTTGGAGGTGAAATGGCCATTTTATC TGAAATACGTGGAAAGGTCTTGAAATTGCTCTTCACACCAGGCACTATAC CAACCCTGATCAACAAAAATACATTGTTCGAGTGTTGCTGATTGTACCTT TCTATGCTCTGGATTCATGGCTCAGCATGTTGTTCTTTGAAAAGAATTAT TACATCTATTTTGATACTATTCGCGACTGTTACGAAGATGTATTTTTTTG ACTGTTTGCTACAAGCTCACACGTTTCCTTTCTCGTCATTTAGATTGAAT CATACTAGAAAATTATTAAAGTTAACAATGAATGACTCACACATTGGAAA ACTGTTTTTCCAAACAGCTGGAGCTCACGTTTTGTCTGGCTTCTTCGCTT GGGCAGCAATTCTCATCACAGGACACCAAGTTTTGTGTTGGCGATCATTG AGAAATGCGGTATGATTACTACCTATCATGAAATCGAGGCTGGAACAATC TCTGCCGGTTATCAAAACTTCATTCTGTGTATAGAGATGTTTTTCGCTGC CGTCATGCTACGATTCGCTTTTCCTTACCAAGTGTACCGTGTACAGAATC ACAGGCTAATTGACCGTGATAGTTTGAAAGAAATTTCGTCCAATTTACGA CGTAGTATTAATCCCAAAGACATTTTACAAGACACTATTCATAATTTCGC TCCTGCCTACCAACAATACGCGGGTGTAAATAAAGCGAAAGACGTTCAAG TAACCATCGCGGATGACGGTCGAGAAACGGTCAGTTATCAGGTAACAATA CCGCACTCCGCCCGTGACGATTATGATAGCGATTCTGCTAGTGGGGGAGA GCGAGTTTCCATTGGCAACAAGGGTGTTTTTAAACAACAGAACGACCGTT TTCGAACGATTGATGGACACTCTCCTTCGCTTTTGTTGGATACGGATGAT GATAAAGTGAACTTGTTAGGTTGAACCAGACAAAGGATATCTCTACATCA CAATCATATACAATATTTCTTACACCATCGCATTATACGGTCTCTTCTTG TTTTACAACGCGACCAAAGATTTGTTGACACCTTATTATCCCGTGCTCAA ATTCTTAACGGTCAAATTCATTGTCTTCATGTCCTTCTGGCAAGGCCACA CTGCAGTTTTGTTTCACCAAACCCATAATGGCTGCCATAACATTGGTTTT AGTTGCTACAAGGAATTATTCAGATGGCGATTTCAGGACAAGCTACTTTA CTTGCACGTGTTGTTTCTCTGGGCGACAAATAAACATTGCATTTCTCAGA GCATGTAAAAAGCATTTGTCATCTACAATTTCTTATGTTTATGTTATGAA TATCTTGGAGGTGAAATGGCCATTTTATCTGAAATACGTGGAAAGGTCTT GAAATTGCTCTTCACACCAGGCACTATACCAACCCTGATCAACAAAAATA CATTGTTCGAGTGTTGCTGATTGTACCTTTCTATGCTCTGGATTCATGGC TCAGCATGTTGTTCTTTGAAAAGAATTATTACATCTATTTTGATACTATT CGCGACTGTTACGAAGATGTATTTTTTTGACTGTTTGCTACAAGCTCACA CGTTTCCTTTCTCGTCATTTAGATTGAATCATACTAGAAAATTATTAAAG TTAACAATGAATGACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGG AGCTCACGTTTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAG GACACCAAGTTTTGTGTTGGCGATCATTGAGAAATGCGGTATGATTACTA CCTATCATGAAATCGAGGCTGGAACAATCTCTGCCGGTTATCAAAACTTC ATTCTGTGTATAGAGATGTTTTTCGCTGCCGTCATGCTACGATTCGCTTT TCCTTACCAAGTGTACCGTGTACAGAATCACAGGCTAATTGACCGTGATA GTTTGAAAGAAATTTCGTCCAATTTACGACGTAGTATTAATCCCAAAGAC ATTTTACAAGACACTATTCATAATTTCGCTCCTGCCTACCAACAATACGC GGGTGTAAATAAAGCGAAAGACGTTCAAGTAACCATCGCGGATGACGGTC GAGAAACGGTCAGTTATCAGGTAACAATACCGCACTCCGCCCGTGACGAT TATGATAGCGATTCTGCTAGTGGGGGAGAGCGAGTTTCCATTGGCAACAA GGGTGTTTTTAAACAACAGAACGACCGTTTTCGAACGATTGATGGACACT CTCCTTCGCTTTTGTTGGATACGGATGATGATAAAGTGAACTTGTTAGGT TGAACCAGACAAAGGATATCTCTACATCACAATCATATACAATATTTCTT ACACCATCGCATTATACGGTCTCTTCTTGTTTTACAACGCGACCAAAGAT TTGTTGACACCTTATTATCCCGTGCTCAAATTCTTAACGGTCAAATTCAT TGTCTTCATGTCCTTCTGGCAAGGCCACACTGCAGTTTTGTTTCACCAAA CCCATAATGGCTGCCATAACATTGGTTTTAGTTGCTACAAGGAATTATTC AGATGGCGATTTCAGGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTG GGCGACAAATAAACATTGCATTTCTCAGAGCATGTAAAAAGCATTTGTCA TCTACAATTTCTTATGTTTATGTTATGAATATCTTGGAGGTGAAATGGCC ATTTTATCTGAAATACGTGGAAAGGTCTTGAAATTGCTCTTCACACCAGG CACTATACCAACCCTGATCAACAAAAATACATTGTTCGAGTGTTGCTGAT TGTACCTTTCTATGCTCTGGATTCATGGCTCAGCATGTTGTTCTTTGAAA AGAATTATTACATCTATTTTGATACTATTCGCGACTGTTACGAAGATGTA TTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTTTCTCGTCATTTA GATTGAATCATACTAGAAAATTATTAAAGTTAACAATGAATGACTCACAC ATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGTTTTGTCTGGCTT CTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAGTTTTGTGTTGGC GATCATTGAGAAATGCGGTATGATTACTACCTATCATGAAATCGAGGCTG GAACAATCTCTGCCGGTTATCAAAACTTCATTCTGTGTATAGAGATGTTT TTCGCTGCCGTCATGCTACGATTCGCTTTTCCTTACCAAGTGTACCGTGT ACAGAATCACAGGCTAATTGACCGTGATAGTTTGAAAGAAATTTCGTCCA ATTTACGACGTAGTATTAATCCCAAAGACATTTTACAAGACACTATTCAT AATTTCGCTCCTGCCTACCAACAATACGCGGGTGTAAATAAAGCGAAAGA CGTTCAAGTAACCATCGCGGATGACGGTCGAGAAACGGTCAGTTATCAGG TAACAATACCGCACTCCGCCCGTGACGATTATGATAGCGATTCTGCTAGT GGGGGAGAGCGAGTTTCCATTGGCAACAAGGGTGTTTTTAAACAACAGAA CGACCGTTTTCGAACGATTGATGGACACTCTCCTTCGCTTTTGTTGGATA CGGATGATGATAAAGTGAACTTGTTAGGTTGAACCAGACAAAGGATATCT CTACATCACAATCATATACAATATTTCTTACACCATCGCATTATACGGTC TCTTCTTGTTTTACAACGCGACCAAAGATTTGTTGACACCTTATTATCCC GTGCTCAAATTCTTAACGGTCAAATTCATTGTCTTCATGTCCTTCTGGCA AGGCCACACTGCAGTTTTGTTTCACCAAACCCATAATGGCTGCCATAACA TTGGTTTTAGTTGCTACAAGGAATTATTCAGATGGCGATTTCAGGACAAG CTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAATAAACATTGCAT TTCTCAGAGCATGTAAAAAGCATTTGTCATCTACAATTTCTTATGTTTAT GTTATGAATATCTTGGAGGTGAAATGGCCATTTTATCTGAAATACGTGGA AAGGTCTTGAAATTGCTCTTCACACCAGGCACTATACCAACCCTGATCAA CAAAAATACATTGTTCGAGTGTTGCTGATTGTACCTTTCTATGCTCTGGA TTCATGGCTCAGCATGTTGTTCTTTGAAAAGAATTATTACATCTATTTTG ATACTATTCGCGACTGTTACGAAGATGTATTTTTTTGACTGTTTGCTACA AGCTCACACGTTTCCTTTCTCGTCATTTAGATTGAATCATACTAGAAAAT TATTAAAGTTAACAATGAATGACTCACACATTGGAAAACTGTTTTTCCAA ACAGCTGGAGCTCACGTTTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCT CATCACAGGACACCAAGTTTTGTGTTGGCGATCATTGAGAAATGCGGTAT GATTACTACCTATCATGAAATCGAGGCTGGAACAATCTCTGCCGGTTATC AAAACTTCATTCTGTGTATAGAGATGTTTTTCGCTGCCGTCATGCTACGA TTCGCTTTTCCTTACCAAGTGTACCGTGTACAGAATCACAGGCTAATTGA CCGTGATAGTTTGAAAGAAATTTCGTCCAATTTACGACGTAGTATTAATC CCAAAGACATTTTACAAGACACTATTCATAATTTCGCTCCTGCCTACCAA CAATACGCGGGTGTAAATAAAGCGAAAGACGTTCAAGTAACCATCGCGGA TGACGGTCGAGAAACGGTCAGTTATCAGGTAACAATACCGCACTCCGCCC GTGACGATTATGATAGCGATTCTGCTAGTGGGGGAGAGCGAGTTTCCATT GGCAACAAGGGTGTTTTTAAACAACAGAACGACCGTTTTCGAACGATTGA TGGACACTCTCCTTCGCTTTTGTTGGATACGGATGATGATAAAGTGAACT TGTTAGGTTGAACCAGACAAAGGATATCTCTACATCACAATCATATACAA TATTTCTTACACCATCGCATTATACGGTCTCTTCTTGTTTTACAACGCGA CCAAAGATTTGTTGACACCTTATTATCCCGTGCTCAAATTCTTAACGGTC AAATTCATTGTCTTCATGTCCTTCTGGCAAGGCCACACTGCAGTTTTGTT TCACCAAACCCATAATGGCTGCCATAACATTGGTTTTAGTTGCTACAAGG AATTATTCAGATGGCGATTTCAGGACAAGCTACTTTACTTGCACGTGTTG TTTCTCTGGGCGACAAATAAACATTGCATTTCTCAGAGCATGTAAAAAGC ATTTGTCATCTACAATTTCTTATGTTTATGTTATGAATATCTTGGAGGTG AAATGGCCATTTTATCTGAAATACGTGGAAAGGTCTTGAAATTGCTCTTC ACACCAGGCACTATACCAACCCTGATCAACAAAAATACATTGTTCGAGTG TTGCTGATTGTACCTTTCTATGCTCTGGATTCATGGCTCAGCATGTTGTT CTTTGAAAAGAATTATTACATCTATTTTGATACTATTCGCGACTGTTACG AAGATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTTCCTTTCTC GTCATTTAGATTGAATCATACTAGAAAATTATTAAAGTTAACAATGAATG ACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTCACGTTTTG TCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACACCAAGTTTT GTGTTGGCGATCATTGAGAAATGCGGTATGATTACTACCTATCATGAAAT CGAGGCTGGAACAATCTCTGCCGGTTATCAAAACTTCATTCTGTGTATAG AGATGTTTTTCGCTGCCGTCATGCTACGATTCGCTTTTCCTTACCAAGTG TACCGTGTACAGAATCACAGGCTAATTGACCGTGATAGTTTGAAAGAAAT TTCGTCCAATTTACGACGTAGTATTAATCCCAAAGACATTTTACAAGACA CTATTCATAATTTCGCTCCTGCCTACCAACAATACGCGGGTGTAAATAAA GCGAAAGACGTTCAAGTAACCATCGCGGATGACGGTCGAGAAACGGTCAG TTATCAGGTAACAATACCGCACTCCGCCCGTGACGATTATGATAGCGATT CTGCTAGTGGGGGAGAGCGAGTTTCCATTGGCAACAAGGGTGTTTTTAAA CAACAGAACGACCGTTTTCGAACGATTGATGGACACTCTCCTTCGCTTTT GTTGGATACGGATGATGATAAAGTGAACTTGTTAGGTTGAACCAGACAAA GGATATCTCTACATCACAATCATATACAATATTTCTTACACCATCGCATT ATACGGTCTCTTCTTGTTTTACAACGCGACCAAAGATTTGTTGACACCTT ATTATCCCGTGCTCAAATTCTTAACGGTCAAATTCATTGTCTTCATGTCC TTCTGGCAAGGCCACACTGCAGTTTTGTTTCACCAAACCCATAATGGCTG CCATAACATTGGTTTTAGTTGCTACAAGGAATTATTCAGATGGCGATTTC AGGACAAGCTACTTTACTTGCACGTGTTGTTTCTCTGGGCGACAAATAAA CATTGCATTTCTCAGAGCATGTAAAAAGCATTTGTCATCTACAATTTCTT ATGTTTATGTTATGAATATCTTGGAGGTGAAATGGCCATTTTATCTGAAA TACGTGGAAAGGTCTTGAAATTGCTCTTCACACCAGGCACTATACCAACC CTGATCAACAAAAATACATTGTTCGAGTGTTGCTGATTGTACCTTTCTAT GCTCTGGATTCATGGCTCAGCATGTTGTTCTTTGAAAAGAATTATTACAT CTATTTTGATACTATTCGCGACTGTTACGAAGATGTATTTTTTTGACTGT TTGCTACAAGCTCACACGTTTCCTTTCTCGTCATTTAGATTGAATCATAC TAGAAAATTATTAAAGTTAACAATGAATGACTCACACATTGGAAAACTGT TTTTCCAAACAGCTGGAGCTCACGTTTTGTCTGGCTTCTTCGCTTGGGCA GCAATTCTCATCACAGGACACCAAGTTTTGTGTTGGCGATCATTGAGAAA TGCGGTATGATTACTACCTATCATGAAATCGAGGCTGGAACAATCTCTGC CGGTTATCAAAACTTCATTCTGTGTATAGAGATGTTTTTCGCTGCCGTCA TGCTACGATTCGCTTTTCCTTACCAAGTGTACCGTGTACAGAATCACAGG CTAATTGACCGTGATAGTTTGAAAGAAATTTCGTCCAATTTACGACGTAG TATTAATCCCAAAGACATTTTACAAGACACTATTCATAATTTCGCTCCTG CCTACCAACAATACGCGGGTGTAAATAAAGCGAAAGACGTTCAAGTAACC ATCGCGGATGACGGTCGAGAAACGGTCAGTTATCAGGTAACAATACCGCA CTCCGCCCGTGACGATTATGATAGCGATTCTGCTAGTGGGGGAGAGCGAG TTTCCATTGGCAACAAGGGTGTTTTTAAACAACAGAACGACCGTTTTCGA ACGATTGATGGACACTCTCCTTCGCTTTTGTTGGATACGGATGATGATAA AGTGAACTTGTTAGGTTGAACCAGACAAAGGATATCTCTACATCACAATC ATATACAATATTTCTTACACCATCGCATTATACGGTCTCTTCTTGTTTTA CAACGCGACCAAAGATTTGTTGACACCTTATTATCCCGTGCTCAAATTCT TAACGGTCAAATTCATTGTCTTCATGTCCTTCTGGCAAGGCCACACTGCA GTTTTGTTTCACCAAACCCATAATGGCTGCCATAACATTGGTTTTAGTTG CTACAAGGAATTATTCAGATGGCGATTTCAGGACAAGCTACTTTACTTGC ACGTGTTGTTTCTCTGGGCGACAAATAAACATTGCATTTCTCAGAGCATG TAAAAAGCATTTGTCATCTACAATTTCTTATGTTTATGTTATGAATATCT TGGAGGTGAAATGGCCATTTTATCTGAAATACGTGGAAAGGTCTTGAAAT TGCTCTTCACACCAGGCACTATACCAACCCTGATCAACAAAAATACATTG TTCGAGTGTTGCTGATTGTACCTTTCTATGCTCTGGATTCATGGCTCAGC ATGTTGTTCTTTGAAAAGAATTATTACATCTATTTTGATACTATTCGCGA CTGTTACGAAGATGTATTTTTTTGACTGTTTGCTACAAGCTCACACGTTT CCTTTCTCGTCATTTAGATTGAATCATACTAGAAAATTATTAAAGTTAAC AATGAATGACTCACACATTGGAAAACTGTTTTTCCAAACAGCTGGAGCTC ACGTTTTGTCTGGCTTCTTCGCTTGGGCAGCAATTCTCATCACAGGACAC CAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003946-exon-sc0000038-1575043694:466610..467008 | TCONS_00003946-exon-sc0000038-1575043694:466610..467008 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1575043694:465667..465829 | TCONS_00003946-exon-sc0000038-1575043694:465667..465829 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1575043694:465029..465119 | TCONS_00003946-exon-sc0000038-1575043694:465029..465119 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1575043694:464428..464503 | TCONS_00003946-exon-sc0000038-1575043694:464428..464503 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1575043694:463752..463843 | TCONS_00003946-exon-sc0000038-1575043694:463752..463843 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1575043694:463249..463418 | TCONS_00003946-exon-sc0000038-1575043694:463249..463418 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1575043694:460575..462994 | TCONS_00003946-exon-sc0000038-1575043694:460575..462994 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:466610..467008 | TCONS_00003946-exon-sc0000038-1510915933:466610..467008 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:465667..465829 | TCONS_00003946-exon-sc0000038-1510915933:465667..465829 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:465029..465119 | TCONS_00003946-exon-sc0000038-1510915933:465029..465119 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:464428..464503 | TCONS_00003946-exon-sc0000038-1510915933:464428..464503 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:463752..463843 | TCONS_00003946-exon-sc0000038-1510915933:463752..463843 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:463249..463418 | TCONS_00003946-exon-sc0000038-1510915933:463249..463418 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1510915933:460575..462994 | TCONS_00003946-exon-sc0000038-1510915933:460575..462994 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:466610..467008 | TCONS_00003946-exon-sc0000038-1491911889:466610..467008 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:465667..465829 | TCONS_00003946-exon-sc0000038-1491911889:465667..465829 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:465029..465119 | TCONS_00003946-exon-sc0000038-1491911889:465029..465119 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:464428..464503 | TCONS_00003946-exon-sc0000038-1491911889:464428..464503 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:463752..463843 | TCONS_00003946-exon-sc0000038-1491911889:463752..463843 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:463249..463418 | TCONS_00003946-exon-sc0000038-1491911889:463249..463418 | Clytia hemisphaerica | exon |
TCONS_00003946-exon-sc0000038-1491911889:460575..462994 | TCONS_00003946-exon-sc0000038-1491911889:460575..462994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000038 | supercontig | sc0000038:460575..467008 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR005178 | Ostalpha/TMEM184C |
Blast
BLAST of TCONS_00003946 vs. Swiss-Prot (Human)
Match: T184B (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2) HSP 1 Score: 375.17 bits (962), Expect = 3.152e-118 Identity = 192/327 (58.72%), Postives = 242/327 (74.01%), Query Frame = 1
Query: 319 KLFFQTAGAHVLSGFFAWAAILITGHQIALHTRHYTNPDQQKYIVRVLLIVPFYALDSWLSMLFFEKN-YYIYFDTIRDCYEAFVIYNFLCLCYEYLGGEMAILSEIRGKVLKTSYFTCTCCFSGRQINIAFLRACKKATLQFCFTKPIMAAITLVLVATRNYSDGDFRPDKGXXXXXXXXXXXXXXALYGLFLFYNATKDLLTPYYPVLKFLTVKFIVFMSFWQGFVLAIIEKCGMITTYH----EIEAGTISAGYQNFILCIEMFFAAVMLRFAFPYQVYRVQNHRLIDR-DSLKEISSNLRRSINPKDILQDTIHNFAPAYQQY 1281
+F T A +SGFF W A+LIT HQI +H R Y+ P++Q+YIVR+L IVP YA DSWLS+LFF + YY+YF T+RDCYEA VIYNFL LCYEYLGGE +I+SEIRGK +++S TCC G+ +I FLR CK+ATLQFC KP+MA T+VL A Y DGDF GYLY+TIIYNIS ++ALY LFLFY AT++LL+PY PVLKF VK ++F+SFWQG +LAI+EKCG I H + GT++AGYQ+FI+C+EMFFAA+ LR AF Y+VY + R +K ISS+L+ ++NP DI+QD IHNF+PAYQQY
Sbjct: 38 PVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQY 364
The following BLAST results are available for this feature:
|