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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003947 ID=TCONS_00003947|Name=TCONS_00003947|organism=Clytia hemisphaerica|type=transcript|length=4228bp
tatttttcatggaaaatctaatttttttaactttaccACTCAGtatgttt
acaaaaaaaaacagggcCATAAATGTTTATTATGTACAAATAATGATTGT
TTTCATAATGGACCTAATAATTGCTTTTACAATAATGACTAAatggttat
tttttcaaattctccttcaaatgaaaatattaatttatAAACACGAAAAC
TGTATGATAAATGAAACAACGAAAATCCAAAATTAAATCCTACTTCTCTT
CAAAGAgaatattcgaaaaaaaaagagattatTGTTACCGTAATTACGGC
TGAAAATCCAAAAGTTCGCTTTACAATCAAACGAGCTAATAAAATCGCCA
AAATTCGGATAGTGCTGCGGCACAACTACTTTGAAATAAGTTAAAACCAC
GCTGGCACATAATTTTGCGAGGGTATTGTTGAACAGTTTTATGAGCGGCA
AGCTTGGTTAATATATCAAAATATTCGGTACGAGTTTGCATTTTTAAGAC
GAATGTTATATCATTTCAAATGTTAAGTGTGAACTTTTGGATAGGTAGTT
AGCCGTAAATGGAAGCAGTTTGTTCCGTGAAGTTCAACTTGATGCTTTTT
TTATACTAGTAATCTTTAGAAATAGCCTGGTTGTTCGTTCCATACCCACA
AATTGTCGTATCTAGGTCCGTTTTACATCCAGATAACATCCATGGAACGT
TAGACGTTGTTAAAACGACCGTCTGTCAACCGTATTTGTCGAATATGTTA
TTCTTAAAATTCAGATGATAgaagtctgaatcgcagacctctacaaaacc
gctaGTAGTAAGAAGCAAAAATTCGATTATACTAGTTGTAGAGGAAAGCA
AACAGCCTAAAATGATAGAGAATGTCTCGGAAACTGAAAATGTTTCAGAA
GTTCTAAAGAACTTCTAAGCAAAGTAAACTATTTGGACATAATATCTGCC
GTTATAAAAAGCTAAAAACTTAAAGCATAAAAATTAACGGTTGcaaattc
gagaaaaaaatgtataaattcAAAACTAGCTATAAAGAAAAAACCGTAAT
AGTTTCttaacaaaatttgcaaaattaaacattttaatTCACTCAGTTAA
TAAGCTTTTTATAGTGTCTTTTTTAGAttagaaagttcataaaaatCGAA
CGAGAACAAAGGAACAGATATGACcatgaaatcatgaaaaatgttcaaat
taGAGGACCACGCCCTTAAATAAAGGGCGGTAAAATCTTCCAGTCTTCAA
TTTTCGGCGTTGGAATGTAGTTGTTTTATGCACGGACCCCATCAACTACC
AAAGAACAGCCTCCATTTTCCATTTTATCTCTCCAAATTTACAACTTTCA
AGAATCACCGACCTTAACAACATTTGACGGTAAATTTCATTCTTCGCTTT
GCATATCAATTGATTCTGGAGATAAAGGCTCATCCTTAATGTCATTTTCA
AGTTGCTCCATCATTTCCGGTGTCGGATTCAACAACGTCATACTCGTACC
ACGTATCGTTAAATCCAAGTCGTTAAACGGTGCTTCATCGGCGTCCAAAT
CATCCGACAATGTATCGTCGTCACCCGATAACGGCGGACTTAAACAGAAC
GTTGCCGTGAACCCGCCGGAAGAATTCAAACTACTTGTCAGTCCTTTAGC
TAAGAGAGTTGAACTATGTTCACCTTCCGAAGTTAAATTACGAGCTTCTA
GGAGTTCTTCCTTGACCATCGACATACTGCCGCTTAACAAATCACTCGTA
TTTCCGCTATGATTGAAATTTTGTTCAGCGCTCCAACTACAGTCCGTCCT
AATAGCGTTTGCAAAAGTGTTTAATAACATAGAACTACTGAGATCGAAAT
TAGAGCATGATGTAGATGTTGGATCTGTGAAAGAGTTTGATGATCTTTGT
AAAGAATCAGCTAAAGCTTTAATGTTATCTTCATCGGAGATGAATCGTGA
AAACGGATTTTTACCGTATGGATGGTCCATCCGGCATTGTTCCGCATCGG
CTGGTGTAGCGGTCGCGTGTTGTTGCGGAAACATTGGTGATGTACTTGAA
GATGAAGCATGTTTATAGATATTTCTATAAAGTGTTTTATTGTGATCATC
GCTATGTTTTGAATTGTTCGTATCATTATTATTGTTCGTGTCAAGAAAGA
CGTTTTCGTTTGTCGGTGATCGTAAACCTTctttgatttttaataaaagt
tGACTTTCAAACAAATCTAAACGTTGGCGTTTAATGTATTCTTGACAGCC
GTAATCCATCATCGAGGAACGTCGTTTCCGGATGTTCGATTCCAGGAGTT
TGTCCGCGTATTCAGGAACGATACTCCAGTAACCGCCTTTACCAGGGTCA
CCCTTGTTACGTGGTATTTTTGCGAAACATTTGTTTAATGAAAGATTGTG
ACGAATAGAGTTCTGGAAATAAAAGAAGGAAACGCTTGATTTCACGACTG
AGCACGAGACGAAAAATAAACGAGCTCGCGTTATGAAGAAGTCTAAATTC
TCAACAAATCTTGTCAAAGGCATACTCTGAAAGTTAACTAGAGTCCAAGA
ATGTAACGTCTGAAACTAATTTTACCCCTTCCCCTGATAAATGTTGTATC
AAGGCCGTTAGAGACAATGGCCGTTATTGTCGCACACAATGATGATAAAA
GAGAGGGTTTGGAGGCGGTCAAATACTCTTTAAATATAAACTTATGACAA
ATATTATGTCTACCAATGTTATGAGCTTTCTATCTTACCTGCCAACTAGG
TTCTGCATGTTTATAGAAGACAAAATTATCTGTGATCCATTTATAAATCT
CACTCAATGTCATTTTAGAACAACTTTTCGATTTCATTGCCATGATAATA
AGGGCGGCATATGAATAGGGCGGTTTGATACGACTGTTCGTTCGATAGTC
TACAACACTATCAGAATGATATCGGTATCCACGCCCGAATTTTTGTTCTT
CACCCTCGTCACTACAGTTCGATGGGGCGGGAGATAAGGGTGCGTAAGAA
ATCGGTTTGCCCTCCATTAAATCGTTTACTTTAACACCAGTCAGCCATTG
CAGGCTAGTCAAGCTATCGTCTAACTCCTCATTAGACTCAGtcctgtttt
cttttttaatatttttactaAGACCTTCAGCGGCtagtttttgttgttgt
atttTAGCGCGGAGTGATGAAACTTtagattgttttttgtttgcgTTGTT
AGAGTCTGAAGAATTTTTATTCCGTGGCGTGAGTGGCATCACTTTATTGG
GTCGTGTTTTATCGCACGGTGAAACGCTTTGCACTTTCGGTTTTGTTTCA
CGCTTAAGAAGCTCCTCAGATGGTTTCGCGTACCCACATTGAGAATGTGA
TTTTGATAACTTGGAAAGACTGTTCCTGACTACCGCATCTATATCGATTC
CGTTTTTAGAGATACTCTCTATACTTTTCGAGATGCTTTGGTGGTTTGGT
ATCAGCATTGGCATTTTGGCTCGATTGAACGCCGAGCGGCGTGATGCTTT
GGATATTTTGTAACGATGCAGAGAATCAGGTAAGATATGCTTCAATGCAG
ATAACCGACCATGAAATAATATCTTTGAAGGATAGATTGTTGATTTTTAA
CGAGAATTCGAGCGACTGAATTCGGAAACGACCATAAGGAGCTGAGAGAT
GAAATTATCTTCAAACAACTTGTCTCAAGTGTGAATCAACGAGCAATAAT
TGAAGCaatctttcttttgttgaaCGACGTTCTTTGTATATTACCTGAAA
CGAAAAACGAATACAGTTATAGGTTGAATTAAAAGGAACTGTTCTATTTT
GATATCAAATATGGACTTTGATTTGATAAAAGATAGACGTGATGCATTGT
TTTTGCCGGACCACTTAAATTATTCAGATTATTCAACCAGGAACTACATA
ATATTTTGTCTCCATTATAGCTTCTCCCTCGCTTCCTTCCTATCCAACAC
AAGTTTTGACCTACAAAGACTCCTATTTTCCCAAGATTCATTCCCTTTAA
AAGGCCTTTAAACCTCAATATATCTCCCCTtataaaacatgaaataatAT
CGTCAAAGGAGGAATTTTGAAAGAGAAGAATATGGTATATTTGCCAAAAA
AGCCTTGAAACAGTGAAAAAGGATATCAAACAAACTCTTCATAAAGCATA
AAAATAAACACTAAATTATCATGGAGGTTTAAACCGTAGCGGAACATTTT
AgcatgtatttcaaaattggcgAAATTT Run BLAST on NCBI transcript from alignment at sc0000038:504942..509228- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003947 ID=TCONS_00003947|Name=TCONS_00003947|organism=Clytia hemisphaerica|type=transcript|length=4287bp|location=Sequence derived from alignment at sc0000038:504942..509228- (Clytia hemisphaerica)
TATTTTTCATGGAAAATCTAATTTTTTTAACTTTACCACTCAGTATGTTT
ACAAAAAAAAACAGGGCCATAAATGTTTATTATGTACAAATAATGATTGT
TTTCATAATGGACCTAATAATTGCTTTTACAATAATGACTAAATGGTTAT
TTTTTCAAATTCTCCTTCAAATGAAAATATTAATTTATAAACACGAAAAC
TGTATGATAAATGAAACAACGAAAATCCAAAATTAAATCCTACTTCTCTT
CAAAGAGAATATTCGAAAAAAAAAGAGATTATTGTTACCGTAATTACGGC
TGAAAATCCAAAAGTTCGCTTTACAATCAAACGAGCTAATAAAATCGCCA
AAATTCGGATAGTGCTGCGGCACAACTACTTTGAAATAAGTTAAAACCAC
GCTGGCACATAATTTTGCGAGGGTATTGTTGAACAGTTTTATGAGCGGCA
AGCTTGGTTAATATATCAAAATATTCGGTACGAGTTTGCATTTTTAAGAC
GAATGTTATATCATTTCAAATGTTAAGTGTGAACTTTTGGATAGGTAGTT
AGCCGTAAATGGAAGCAGTTTGTTCCGTGAAGTTCAACTTGATGCTTTTT
TTATACTAGTAATCTTTAGAAATAGCCTGGTTGTTCGTTCCATACCCACA
AATTGTCGTATCTAGGTCCGTTTTACATCCAGATAACATCCATGGAACGT
TAGACGTTGTTAAAACGACCGTCTGTCAACCGTATTTGTCGAATATGTTA
TTCTTAAAATTCAGATGATAGAAGTCTGAATCGCAGACCTCTACAAAACC
GCTAGTAGTAAGAAGCAAAAATTCGATTATACTAGTTGTAGAGGAAAGCA
AACAGCCTAAAATGATAGAGAATGTCTCGGAAACTGAAAATGTTTCAGAA
GTTCTAAAGAACTTCTAAGCAAAGTAAACTATTTGGACATAATATCTGCC
GTTATAAAAAGCTAAAAACTTAAAGCATAAAAATTAACGGTTGCAAATTC
GAGAAAAAAATGTATAAATTCAAAACTAGCTATAAAGAAAAAACCGTAAT
AGTTTCTTAACAAAATTTGCAAAATTAAACATTTTAATTCACTCAGTTAA
TAAGCTTTTTATAGTGTCTTTTTTAGATTAGAAAGTTCATAAAAATCGAA
CGAGAACAAAGGAACAGATATGACCATGAAATCATGAAAAATGTTCAAAT
TAGAGGACCACGCCCTTAAATAAAGGGCGGTAAAATCTTCCAGTCTTCAA
TTTTCGGCGTTGGAATGTAGTTGTTTTATGCACGGACCCCATCAACTACC
AAAGAACAGCCTCCATTTTCCATTTTATCTCTCCAAATTTACAACTTTCA
AGAATCACCGACCTTAACAACATTTGACGGTAAATTTCATTCTTCGCTTT
GCATATCAATTGATTCTGGAGATAAAGGCTCATCCTTAATGTCATTTTCA
AGTTGCTCCATCATTTCCGGTGTCGGATTCAACAACGTCATACTCGTACC
ACGTATCGTTAAATCCAAGTCGTTAAACGGTGCTTCATCGGCGTCCAAAT
CATCCGACAATGTATCGTCGTCACCCGATAACGGCGGACTTAAACAGAAC
GTTGCCGTGAACCCGCCGGAAGAATTCAAACTACTTGTCAGTCCTTTAGC
TAAGAGAGTTGAACTATGTTCACCTTCCGAAGTTAAATTACGAGCTTCTA
GGAGTTCTTCCTTGACCATCGACATACTGCCGCTTAACAAATCACTCGTA
TTTCCGCTATGATTGAAATTTTGTTCAGCGCTCCAACTACAGTCCGTCCT
AATAGCGTTTGCAAAAGTGTTTAATAACANTGTTCAGCGCTCCAACTACA
ATCCGTCCTAATAGCGTTTGCGAAAGTGTTTAATAACATAGAACTACTGA
GATCGAAATTAGAGCATGATGTAGATGTTGGATCTGTGAAAGAGTTTGAT
GATCTTTGTAAAGAATCAGCTAAAGCTTTAATGTTATCTTCATCGGAGAT
GAATCGTGAAAACGGATTTTTACCGTATGGATGGTCCATCCGGCATTGTT
CCGCATCGGCTGGTGTAGCGGTCGCGTGTTGTTGCGGAAACATTGGTGAT
GTACTTGAAGATGAAGCATGTTTATAGATATTTCTATAAAGTGTTTTATT
GTGATCATCGCTATGTTTTGAATTGTTCGTATCATTATTATTGTTCGTGT
CAAGAAAGACGTTTTCGTTTGTCGGTGATCGTAAACCTTCTTTGATTTTT
AATAAAAGTTGACTTTCAAACAAATCTAAACGTTGGCGTTTAATGTATTC
TTGACAGCCGTAATCCATCATCGAGGAACGTCGTTTCCGGATGTTCGATT
CCAGGAGTTTGTCCGCGTATTCAGGAACGATACTCCAGTAACCGCCTTTA
CCAGGGTCACCCTTGTTACGTGGTATTTTTGCGAAACATTTGTTTAATGA
AAGATTGTGACGAATAGAGTTCTGGAAATAAAAGAAGGAAACGCTTGATT
TCACGACTGAGCACGAGACGAAAAATAAACGAGCTCGCGTTATGAAGAAG
TCTAAATTCTCAACAAATCTTGTCAAAGGCATACTCTGAAAGTTAACTAG
AGTCCAAGAATGTAACGTCTGAAACTAATTTTACCCCTTCCCCTGATAAA
TGTTGTATCAAGGCCGTTAGAGACAATGGCCGTTATTGTCGCACACAATG
ATGATAAAAGAGAGGGTTTGGAGGCGGTCAAATACTCTTTAAATATAAAC
TTATGACAAATATTATGTCTACCAATGTTATGAGCTTTCTATCTTACCTG
CCAACTAGGTTCTGCATGTTTATAGAAGACAAAATTATCTGTGATCCATT
TATAAATCTCACTCAATGTCATTTTAGAACAACTTTTCGATTTCATTGCC
ATGATAATAAGGGCGGCATATGAATAGGGCGGTTTGATACGACTGTTCGT
TCGATAGTCTACAACACTATCAGAATGATATCGGTATCCACGCCCGAATT
TTTGTTCTTCACCCTCGTCACTACAGTTCGATGGGGCGGGAGATAAGGGT
GCGTAAGAAATCGGTTTGCCCTCCATTAAATCGTTTACTTTAACACCAGT
CAGCCATTGCAGGCTAGTCAAGCTATCGTCTAACTCCTCATTAGACTCAG
TCCTGTTTTCTTTTTTAATATTTTTACTAAGACCTTCAGCGGCTAGTTTT
TGTTGTTGTATTTTAGCGCGGAGTGATGAAACTTTAGATTGTTTTTTGTT
TGCGTTGTTAGAGTCTGAAGAATTTTTATTCCGTGGCGTGAGTGGCATCA
CTTTATTGGGTCGTGTTTTATCGCACGGTGAAACGCTTTGCACTTTCGGT
TTTGTTTCACGCTTAAGAAGCTCCTCAGATGGTTTCGCGTACCCACATTG
AGAATGTGATTTTGATAACTTGGAAAGACTGTTCCTGACTACCGCATCTA
TATCGATTCCGTTTTTAGAGATACTCTCTATACTTTTCGAGATGCTTTGG
TGGTTTGGTATCAGCATTGGCATTTTGGCTCGATTGAACGCCGAGCGGCG
TGATGCTTTGGATATTTTGTAACGATGCAGAGAATCAGGTAAGATATGCT
TCAATGCAGATAACCGACCATGAAATAATATCTTTGAAGGATAGATTGTT
GATTTTTAACGAGAATTCGAGCGACTGAATTCGGAAACGACCATAAGGAG
CTGAGAGATGAAATTATCTTCAAACAACTTGTCTCAAGTGTGAATCAACG
AGCAATAATTGAAGCAATCTTTCTTTTGTTGAACGACGTTCTTTGTATAT
TACCTGAAACGAAAAACGAATACAGTTATAGGTTGAATTAAAAGGAACTG
TTCTATTTTGATATCAAATATGGACTTTGATTTGATAAAAGATAGACGTG
ATGCATTGTTTTTGCCGGACCACTTAAATTATTCAGATTATTCAACCAGG
AACTACATAATATTTTGTCTCCATTATAGCTTCTCCCTCGCTTCCTTCCT
ATCCAACACAAGTTTTGACCTACAAAGACTCCTATTTTCCCAAGATTCAT
TCCCTTTAAAAGGCCTTTAAACCTCAATATATCTCCCCTTATAAAACATG
AAATAATATCGTCAAAGGAGGAATTTTGAAAGAGAAGAATATGGTATATT
TGCCAAAAAAGCCTTGAAACAGTGAAAAAGGATATCAAACAAACTCTTCA
TAAAGCATAAAAATAAACACTAAATTATCATGGAGGTTTAAACCGTAGCG
GAACATTTTAGCATGTATTTCAAAATTGGCGAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003947-exon-sc0000038-1575043694:507401..509228 | TCONS_00003947-exon-sc0000038-1575043694:507401..509228 | Clytia hemisphaerica | exon |
| TCONS_00003947-exon-sc0000038-1575043694:504942..507341 | TCONS_00003947-exon-sc0000038-1575043694:504942..507341 | Clytia hemisphaerica | exon |
| TCONS_00003947-exon-sc0000038-1510915933:507401..509228 | TCONS_00003947-exon-sc0000038-1510915933:507401..509228 | Clytia hemisphaerica | exon |
| TCONS_00003947-exon-sc0000038-1510915933:504942..507341 | TCONS_00003947-exon-sc0000038-1510915933:504942..507341 | Clytia hemisphaerica | exon |
| TCONS_00003947-exon-sc0000038-1491911889:507401..509228 | TCONS_00003947-exon-sc0000038-1491911889:507401..509228 | Clytia hemisphaerica | exon |
| TCONS_00003947-exon-sc0000038-1491911889:504942..507341 | TCONS_00003947-exon-sc0000038-1491911889:504942..507341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:504942..509228 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00003947 vs. Swiss-Prot (Human)
Match: FOXJ1 (Forkhead box protein J1 OS=Homo sapiens GN=FOXJ1 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 8.632e-25 Identity = 66/173 (38.15%), Postives = 88/173 (50.87%), Query Frame = -3
Query: 2700 KLAAEGLSKNIKKENRTESNEELDDSLTSLQWLT-----GVKVNDLMEGK---------PISYAPLSPAPSNCSDEGEEQKFGR------------GYRYHSDSVVDYRTNSRIKPPYSYAALIIMAMKSKSCSKMTLSEIYKWITDNFVFYKHAEPSWQVR*KAHNIGRHNI 3140
+L+ G ++ E E + LDDSLTSLQWL K L G P S AP SP ++ + G+ G+ G + VDY TN +KPPYSYA LI MAM++ +K+TLS IYKWITDNF +++HA+P+WQ N RHN+
Sbjct: 7 RLSGAGPAEEAGPEGGLEEPDALDDSLTSLQWLQEFSILNAKAPALPPGGTDPHGYHQVPGSAAPGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQAPPPDDVDYATNPHVKPPYSYATLICMAMQASKATKITLSAIYKWITDNFCYFRHADPTWQ------NSIRHNL 173
The following BLAST results are available for this feature:
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