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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003964 ID=TCONS_00003964|Name=TCONS_00003964|organism=Clytia hemisphaerica|type=transcript|length=1225bp
ACCTATCGATGGAGACGTTAAGAAACAACcaatcagaaaaaatgaaaaca
atattcTTGAAAGAGAACAACAGATCGAATCGAAATTAACAAACGGGGAC
GTGAAACTTTCATCTCTTGATAAAACACAAAACCAGTGCTTAATCAACCG
AAATCAATTCTTCAGTGACATTTTAAATCAAACAGAGGATTTAGATGATA
GAAACCAGGCGCTTACAGTTGATGTCGCTAAGGATGAGTGTAGAAACCAG
CCCTTTGATGAAGGTGATAGTGGTTTCTTAACAGATTTGTTCAGCAAGCG
AGATGGAAACCGTCCACCTGTCAAGACTAATGATGCAACTGGACGCAGTC
TACTTATGGTATCGAATAACAACAATGGACGAAAGATCGAAGAATTCGAT
ATGTTGGGTAACGAGGATGACATCTTCGcttgaaaaaagtttattttata
caccttttcgaccgtagctgtcaattgccgcgcgggctttttttcgtttt
aacaccctaaaaccgtcccagtctttttttcgcactaTAGACATTAGATA
AAGGTgtcaaaaaggattggatcgagtttaggggtgGGGGAGCCCGctcg
gcaattggcggctacggttgaaaaggtgtatgaATTGTATTCTCAGGTGC
TTAAAAAGCGATCCAAAATTTTATCCATCCTTTATAACCATGAACGAGAG
ATCTGTATGAGGTGAagagtttatttatttttgaaaatattttttgcggt
CAAAAGGAACCTCATTATTTTGCTCTAAAGCAGTTCGAGTTTAGCCTATA
TTTAGCCTTTTGCTTTACTTGGCTTATCTTTTAGTATGTAGAGGTATAAT
CTTAACACCCCAACGGCAATTAGGCCCTCTAGTTGATCAAATTTTGAACG
TTTTCAACCCCCTGTTTAATTTAACCTCCCCTCTGATAAATGCCCTTTCT
GTTCACATTTCCAACGCCCCGGTAATAAGCCCCCCTCCCGTGTATTCCAG
TCCCCAAACCCCCTTTTATCAGGTTCCTCGGAGTTCTTTGCAAATAAAGa
caaaattgaacaaaataggtttgttgaaaaattattttttattttatttt
tttttcaattaatatttatttcaattttttcaaaaaagacaatattccaa
tatttaaccTTACACAGAATTAGGTCTTTTTCTCAGTTTCTTTCGCACCA
GCAGGATATAATTGATACCTTTTCG Run BLAST on NCBI protein sequence of TCONS_00003964-protein >TCONS_00003964-protein ID=TCONS_00003964-protein|Name=TCONS_00003964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
PIDGDVKKQPIRKNENNILEREQQIESKLTNGDVKLSSLDKTQNQCLINR
NQFFSDILNQTEDLDDRNQALTVDVAKDECRNQPFDEGDSGFLTDLFSKR
DGNRPPVKTNDATGRSLLMVSNNNNGRKIEEFDMLGNEDDIFA Run BLAST on NCBI transcript from alignment at sc0000038:855549..858848- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003964 ID=TCONS_00003964|Name=TCONS_00003964|organism=Clytia hemisphaerica|type=transcript|length=3300bp|location=Sequence derived from alignment at sc0000038:855549..858848- (Clytia hemisphaerica)
ACCTATCGATGGAGACGTTAAGAAACAACCAATCAGAAAAAATGAAAACA
ATATTCTTGAAAGAGAACAACAGATCGAATCGAAATTAACAAACGGGGAC
GTGAAACTTTCATCTCTTGATAAAACACAAAACCAGTGCTTAATCAACCG
AAATCAATTCTTCAGTGACATTTTAAATCAAACAGAGGATTTAGATGATA
GAAACCAGGCGCTTACAGTTGATGTCGCTAAGGATGAGTGTAGAAACCAG
CCCTTTGATGAAGGTGATAGTGGTTTCTTAACAGATTTGTTCAGCAAGCG
AGATGGAAACCGTCCACCTGTCAAGACTAATGATGCAACTGGGTAAGTGA
ATTCGTTGAATATTTGAATCGGATATTTCTCGACGCTTGGTTTTTTAAAG
GGACATTAAAGTAGTAAAATGTAAATATTGCGCGAACCACGTGTCATTGA
AGAGAACAATTAAAGTCACGTGTCTAAAACAAACTCCAAAACAATTGAAC
AATCAAAATCAGCCATATTTGGTTTTATTTTTTATTTTGACATGTGATAT
TTGTTTTGATTTTGTATCCGCTGCATACAGTTTGTTTACAAATTTCGCAA
GTACTGTTATGTCCCTTTAAGCTACCTCTAAAAGAATCCAAGAGAACTCA
CTCGAAAACCCTAATCTAACATATAATTCATCCTGCAATACCACTCTCTT
TTCTAAAGAGGTGTGGTAAATGAGCCAAGGTCTTTATAGTGAATACCTGT
CATGCACAGGGTATCAGAATCTGCTTGAAGATTATCAAAATTCTATTCCG
CATGAGAGACATTCACTGACTCTCTACGACGGTGGAGTGCAAACTGTTTT
TTAAATTTGAATCGCCTGTACGCTTGTGTTTTCGATACCGTCGAAAAGAA
TTTTCCTTGTATTTTCGTTACAAGTCTCCTCCAGTTGACCGCGCTTCTAA
TGGTTGATATAAAGTCTGTCTCGAAATAATTTGCAGCTGGAGAAATAAAT
AGCTGTAACTTTTGATAGAATTCGAATCAAGTTACGGTATTGTGCTCGTT
AAAAAGATATTCGTGAGTGGAATATTATCAAGTAAAAAAATTGAGAAATA
AAAGGAAAATGAAAATGAAAAATGAAGAAGAAAAAAATTAACTTCTTGTA
GAAATGTGGTATAACTATCATTTTCACAGGAGTGACTCTTCAATCTTTAT
TCATCATCACTGTGAAAAAATTTTTCAAAAATATTCATTCAATCAAAAGA
TATCAAACAAAGTTTATTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTAACAAGCACAAAACCGCAACTTGATTCGAATTCTATCAA
AAGTTACAGCCATTTTTTTCTCCAGCTGCAAATTATTTCGAGACAGACTT
TAGAAGTAAAGACTACTCTCCTGTACTCGCGGCTTTGAAATGCCTTCAGT
GTGGCTTCTTTCTGTATATTCATAAAGTCGTTATTTTAGCTGTTGTGTCA
AAAAAAAAATGAATTGCTTTAATAAATAAGAAAAATCTAAATGTAAAAAA
AGATATTTTTGCGAAACAAGACTTTTAATAATCAATAAATTACAGTTATT
TTCTCGTTAAAATGTAAAATTAGCGACTAAAAATTGTAAACCTGTTTTCA
ACAAATTAGGTTTGTCTGTTTGATCACAAATAAAACAGCAAAAAATACTC
ATTTAATAGGAAAACAACACCGATGCATGCAAAGCAGACTTTAAGTAATT
TCTTCTCCATTCGAAAATTATAGAAATATCTTTCCAACGTTAAATGAGTT
TTTTCAGAGGCAGACTTTTCAGAGTATCAAAACAATAATAAACGAAAGAT
TGTTCATAACACTAAAGTATAAAAAGTTTACAATTTCTATTTTAACTTTA
CTTTTTACCCTTTTGAAGATGAAAGCGCTTAAAAATATCTTTCCAACGAT
TCATGATTTCTTTTCAGACGCAGTCTACTTATGGTATCGAATAACAACAA
TGGACGAAAGATCGAAGAATTCGATATGTTGGGTAACGAGGATGACATCT
TCGCTTGAAAAAAGTTTATTTTATACACCTTTTCGACCGTAGCTGTCAAT
TGCCGCGCGGGCTTTTTTTCGTTTTAACACCCTAAAACCGTCCCAGTCTT
TTTTTCGCACTATAGACATTAGATAAAGGTGTCAAAAAGGATTGGATCGA
GTTTAGGGGTGGGGGAGCCCGCTCGGCAATTGGCGGCTACGGTTGAAAAG
GTGTATGAATTGTATTCTCAGGTGCTTAAAAAGCGATCCAAAATTTTATC
CATCCTTTATAACCATGAACGAGAGATCTGTATGAGGTGAAGAGTTTATT
TATTTTTGAAAATATTTTTTGCGGTCAAAAGGAACCTCATTATTTTGCTC
TAAAGCAGTTCGAGTTTAGCCTATATTTAGCCTTTTGCTTTACTTGGCTT
ATCTTTTAGTATGTAGAGGTATAATCTTAACACCCCAACGGCAATTAGGC
CCTCTAGTTGATCAAATTTTGAACGTTTTCAACCCCCTGTTTAATTTAAC
CTCCCCTCTGATAAATGCCCTTTCTGTTCACATTTCCAACGCCCCGGTAA
TAAGCCCCCCTCCCGTGTATTCCAGTCCCCAAACCCCCTTTTATCAGGTT
CCTCGGAGTTCTTTGCAAATAAAGACAAAATTGAACAAAATAGGTTTGTT
GAAAAATTATTTTTTATTTTATTTTTTTTTCAATTAATATTTATTTCAAT
TTTTTCAAAAAAGACAATATTCCAATATTTAACCTTACACAGAATTAGGT
CTTTTTCTCAGTTTCTTTCGCACCAGCAGGATATAATTGATACCTTTTCG
Coding sequence (CDS) from alignment at sc0000038:855549..858848- >TCONS_00003964 ID=TCONS_00003964|Name=TCONS_00003964|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0000038:855549..858848- (Clytia hemisphaerica)
ACGCAGTCTACTTATGGTATCGAATAACAACAATGGACGAAAGATCGAAG
AATTCGATATGTTGGGTAACGAGGATGACATCTTCGCTTGACCTATCGAT
GGAGACGTTAAGAAACAACCAATCAGAAAAAATGAAAACAATATTCTTGA
AAGAGAACAACAGATCGAATCGAAATTAACAAACGGGGACGTGAAACTTT
CATCTCTTGATAAAACACAAAACCAGTGCTTAATCAACCGAAATCAATTC
TTCAGTGACATTTTAAATCAAACAGAGGATTTAGATGATAGAAACCAGGC
GCTTACAGTTGATGTCGCTAAGGATGAGTGTAGAAACCAGCCCTTTGATG
AAGGTGATAGTGGTTTCTTAACAGATTTGTTCAGCAAGCGAGATGGAAAC
CGTCCACCTGTCAAGACTAATGATGCAACTGGACGCAGTCTACTTATGGT
ATCGAATAACAACAATGGACGAAAGATCGAAGAATTCGATATGTTGGGTA
ACGAGGATGACATCTTCGCTTGACCTATCGATGGAGACGTTAAGAAACAA
CCAATCAGAAAAAATGAAAACAATATTCTTGAAAGAGAACAACAGATCGA
ATCGAAATTAACAAACGGGGACGTGAAACTTTCATCTCTTGATAAAACAC
AAAACCAGTGCTTAATCAACCGAAATCAATTCTTCAGTGACATTTTAAAT
CAAACAGAGGATTTAGATGATAGAAACCAGGCGCTTACAGTTGATGTCGC
TAAGGATGAGTGTAGAAACCAGCCCTTTGATGAAGGTGATAGTGGTTTCT
TAACAGATTTGTTCAGCAAGCGAGATGGAAACCGTCCACCTGTCAAGACT
AATGATGCAACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003964-exon-sc0000038-1575043694:858507..858848 | TCONS_00003964-exon-sc0000038-1575043694:858507..858848 | Clytia hemisphaerica | exon |
| TCONS_00003964-exon-sc0000038-1575043694:855549..856431 | TCONS_00003964-exon-sc0000038-1575043694:855549..856431 | Clytia hemisphaerica | exon |
| TCONS_00003964-exon-sc0000038-1510915933:858507..858848 | TCONS_00003964-exon-sc0000038-1510915933:858507..858848 | Clytia hemisphaerica | exon |
| TCONS_00003964-exon-sc0000038-1510915933:855549..856431 | TCONS_00003964-exon-sc0000038-1510915933:855549..856431 | Clytia hemisphaerica | exon |
| TCONS_00003964-exon-sc0000038-1491911889:858507..858848 | TCONS_00003964-exon-sc0000038-1491911889:858507..858848 | Clytia hemisphaerica | exon |
| TCONS_00003964-exon-sc0000038-1491911889:855549..856431 | TCONS_00003964-exon-sc0000038-1491911889:855549..856431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:855549..858848 - |
Blast
The following BLAST results are available for this feature:
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