TCONS_00004002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004002
Unique NameTCONS_00004002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004002 ID=TCONS_00004002|Name=TCONS_00004002|organism=Clytia hemisphaerica|type=transcript|length=343bp
tttaaaaaaactttagcCTAATTCCGCAACCAAGCAACTAAGTATGGTGT
TCTTTTTAGgcctgaaaattcaaaaacaaataagaacaatagaaaagctt
gtatttcttatacacaacccTTGATATAGTTTCttaaaagtttatatttt
taatCCTTATTTTCTTCATAGTTTTATTTTAccttgtttaaaaaaagttt
aaaaagtttatGTGTTTTACGATGAAGATTTATAGTttatttagatttaa
aaaagataaccCTAAAAAGACATTCTTTTTATAGTCATAAAAATGGGTCA
TTCCATAGTATATCCATACGGGGGGTGGAAGACAAACATTTCC
Run BLAST on NCBI

transcript from alignment at sc0000038:725394..725736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004002 ID=TCONS_00004002|Name=TCONS_00004002|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at sc0000038:725394..725736 (Clytia hemisphaerica)
GGAAATGTTTGTCTTCCACCCCCCGTATGGATATACTATGGAATGACCCA
TTTTTATGACTATAAAAAGAATGTCTTTTTAGggttatcttttttaaatc
taaataaACTATAAATCTTCATCGTAAAACACataaactttttaaacttt
ttttaaacaaggTAAAATAAAACTATGAAGAAAATAAGGattaaaaatat
aaacttttaaGAAACTATATCAAgggttgtgtataagaaatacaagcttt
tctattgttcttatttgtttttgaattttcaggcCTAAAAAGAACACCAT
ACTTAGTTGCTTGGTTGCGGAATTAGgctaaagtttttttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002251XLOC_002251Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004002-exon-sc0000038-1491911889:725394..725736TCONS_00004002-exon-sc0000038-1491911889:725394..725736Clytia hemisphaericaexon
TCONS_00004002-exon-sc0000038-1510915933:725394..725736TCONS_00004002-exon-sc0000038-1510915933:725394..725736Clytia hemisphaericaexon
TCONS_00004002-exon-sc0000038-1575043694:725394..725736TCONS_00004002-exon-sc0000038-1575043694:725394..725736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:725394..725736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264758	0.516362	0.299773	0.586562	4.64153	2.25711	1.70194	3.18667	0.223107	0	1.87765	0.176327	0.352165	0	0.751692	0.645344	0.198753	0.407431	1.12577	0.589021	0	1.12374	0	0.275986	0	2.02956	0.726072	0.774883	0	0.299398
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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