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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004015 ID=TCONS_00004015|Name=TCONS_00004015|organism=Clytia hemisphaerica|type=transcript|length=810bp
ttttgattttggttgtCGAAAGTTTAAAGTTTCAATGTCACTAGCATGCA
GAAAAATAAATCGGAAGTGCTTATTTCTATGTAATTTACGACGTCTTGCA
TTGATTAAAtattaaagtgacgtcaaatattttttgtaggaAGAAAGTCG
TCAATTCTTTCATTAACATTATTGATCAAATCTTAAAACAGTTCCACTTT
CACGGCTAACAACAGCAACAGCACCACCACACTTGGCGTAACTTTTGGTT
GCACTTCACATCTGCCATACAAACCTTACCACCACAGCAAACCTTACCAC
CACAGCAAACTAATTCTGCATCATGCCCAACACCGGAGAAGTCCAACATC
GTggcttcaaaaataaaatttatttgaagaAACTAGGAGAGTACGAACTA
GACGCTTTACAGAAAGAAACTAAACGTCGTTGGGCACATGATGAGCTCTC
CTTCAGTCGACATAACCCACAAAAACAGTTCACGCAACACCGACAAAAGA
GGAAAGTGGCGCCAGCTTATCCTCAGCTCCAGCGTAAAAGAAAGAATCCG
GCTCTTCAACATGATGCCGGCTCACCCTCAATACGTCGCAACAAATTGGC
TCCTTTCTCCACCCTTGGTAAACCAACATGCGGATTCAACTTTTCACGCG
ATACAGATAACAGAAAACAAAACTTCGGTATCATGCCAACAAACCTTGTA
AAATGGAGAAGCGATAAATtggaaaaagaaataattcattgataaattga
ttatttttttaaagaacattacACCCTTCAAATTAGTCATTTTTGTGAAA
TTTCTTTGCC Run BLAST on NCBI protein sequence of TCONS_00004015-protein >TCONS_00004015-protein ID=TCONS_00004015-protein|Name=TCONS_00004015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MPNTGEVQHRGFKNKIYLKKLGEYELDALQKETKRRWAHDELSFSRHNPQ
KQFTQHRQKRKVAPAYPQLQRKRKNPALQHDAGSPSIRRNKLAPFSTLGK
PTCGFNFSRDTDNRKQNFGIMPTNLVKWRSDKLEKEIIH Run BLAST on NCBI transcript from alignment at sc0000039:198713..199745+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004015 ID=TCONS_00004015|Name=TCONS_00004015|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at sc0000039:198713..199745+ (Clytia hemisphaerica)
ttttgattttggttgtCGAAAGTTTAAAGTTTCAATGTCACTAGCATGCA
GAAAAATAAATCGGAAGTGCTTATTTCTATGTAATTTACGACGTCTTGCA
TTGATTAAAtattaaagtgacgtcaaatattttttgtaggaAGAAAGTCG
TCAATTCTTTCATTAACATTATTGATCAAATCTTAAAACAGTTCCACTTT
CACGGCTAACAACAGCAACAGCACCACCACACTTGGCGTAACTTTTGGTT
GCACTTCACATCTGCCATACAAACCTTACCACCACAGCAAACCTTACCAC
CACAGCAAACTAATTCTGCATCATGCCCAACACCGGAGAAGTCCAACATC
GTggcttcaaaaataaaatttatttgaagaAACTAGGAGAGTACGAACTA
GACGCTTTACAGAAAGAAACTAAACGTCGTTGGGCACATGATGAGCTCTC
CTTCAGTCGACATAACCCACAAAAACAGTTCACGCAACACCGACAAAAGA
GGTTTGCCATTTGAAACTGAAAGACTTTCATTCTCTTAATTCTCAATATC
GTTATTTTGCTCTTTAGTGCTTTATAATAGCCGAtgatatttttagcttt
ttataAAACGTATCACAATACAATGCCTTAGTGACAACATTTACAAAATG
ACAATCAGTTAATTTGCAGCTTCAAGGCGTTTTCGCAGTTCTTAACTAAA
GTTTTATCTTTAATCCTTTTAAAGGAAAGTGGCGCCAGCTTATCCTCAGC
TCCAGCGTAAAAGAAAGAATCCGGCTCTTCAACATGATGCCGGCTCACCC
TCAATACGTCGCAACAAATTGGCTCCTTTCTCCACCCTTGGTAAACCAAC
ATGCGGATTCAACTTTTCACGCGATACAGATAACAGAAAACAAAACTTCG
GTATCATGCCAACAAACCTTGTAAAATGGAGAAGCGATAAATtggaaaaa
gaaataattcattgataaattgattatttttttaaagaacattacACCCT
TCAAATTAGTCATTTTTGTGAAATTTCTTTGCC Coding sequence (CDS) from alignment at sc0000039:198713..199745+ >TCONS_00004015 ID=TCONS_00004015|Name=TCONS_00004015|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000039:198713..199745+ (Clytia hemisphaerica)
ATGCCCAACACCGGAGAAGTCCAACATCGTggcttcaaaaataaaattta
tttgaagaAACTAGGAGAGTACGAACTAGACGCTTTACAGAAAGAAACTA
AACGTCGTTGGGCACATGATGAGCTCTCCTTCAGTCGACATAACCCACAA
AAACAGTTCACGCAACACCGACAAAAGAGGAAAGTGGCGCCAGCTTATCC
TCAGCTCCAGCGTAAAAGAAAGAATCCGGCTCTTCAACATGATGCCGGCT
CACCCTCAATACGTCGCAACAAATTGGCTCCTTTCTCCACCCTTGGTAAA
CCAACATGCGGATTCAACTTTTCACGCGATACAGATAACAGAAAACAAAA
CTTCGGTATCATGCCAACAAACCTTGTAAAATGGAGAAGCGATAAATtgg
aaaaagaaataattcattgaATGCCCAACACCGGAGAAGTCCAACATCGT
ggcttcaaaaataaaatttatttgaagaAACTAGGAGAGTACGAACTAGA
CGCTTTACAGAAAGAAACTAAACGTCGTTGGGCACATGATGAGCTCTCCT
TCAGTCGACATAACCCACAAAAACAGTTCACGCAACACCGACAAAAGAGG
AAAGTGGCGCCAGCTTATCCTCAGCTCCAGCGTAAAAGAAAGAATCCGGC
TCTTCAACATGATGCCGGCTCACCCTCAATACGTCGCAACAAATTGGCTC
CTTTCTCCACCCTTGGTAAACCAACATGCGGATTCAACTTTTCACGCGAT
ACAGATAACAGAAAACAAAACTTCGGTATCATGCCAACAAACCTTGTAAA
ATGGAGAAGCGATAAATtggaaaaagaaataattcattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004015-exon-sc0000039-1491911889:198713..199213 | TCONS_00004015-exon-sc0000039-1491911889:198713..199213 | Clytia hemisphaerica | exon |
| TCONS_00004015-exon-sc0000039-1510915933:198713..199213 | TCONS_00004015-exon-sc0000039-1510915933:198713..199213 | Clytia hemisphaerica | exon |
| TCONS_00004015-exon-sc0000039-1575043694:198713..199213 | TCONS_00004015-exon-sc0000039-1575043694:198713..199213 | Clytia hemisphaerica | exon |
| TCONS_00004015-exon-sc0000039-1491911889:199437..199745 | TCONS_00004015-exon-sc0000039-1491911889:199437..199745 | Clytia hemisphaerica | exon |
| TCONS_00004015-exon-sc0000039-1510915933:199437..199745 | TCONS_00004015-exon-sc0000039-1510915933:199437..199745 | Clytia hemisphaerica | exon |
| TCONS_00004015-exon-sc0000039-1575043694:199437..199745 | TCONS_00004015-exon-sc0000039-1575043694:199437..199745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:198713..199745 + |
Blast
The following BLAST results are available for this feature:
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