TCONS_00004050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004050
Unique NameTCONS_00004050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004050 ID=TCONS_00004050|Name=TCONS_00004050|organism=Clytia hemisphaerica|type=transcript|length=1752bp
agTCAATAAAATAGTATACAAATTTTTAAACACTGGTttacaaaacttta
aaacatgAAATAACAAAGAAGAATGATGATTGTTGGTGAATATGTTCATA
CGAATTTATCATCGCCTTCATCATCTTCACTGCTGCTACAACAAGTGTCA
CTGTATGAAAGAAAATTAGGCACAACATCTCGTGCCCTCCTATCAAAGCT
CACAACATCTCGCGCCCTCCTATCAAAGCTTACAACATCTTGTGTCCTGC
TCTCGAAGCTTGTCAGACCATTGGATATTTGATCATGCCAACCAAAAGta
tgGTTTGATTTGCGATAAATCCTGGATGTTATCAATGTTGGGATCCATTG
TGTTTGTTGGATGGGCTTTGGGAAGCTTCGTCTTTGGATTTTTTTCGGAT
AAATATGGTAGAAAATTAGTCATGATACCCTGTTTATTTTTTGATCTCTT
CTGTTTATTTCTTCACGGATTCATTTCTTCAATATGGGTTCTAATGGCTG
TTCGGTTCATTATGGGATTCTTTCACGCTGCTCCTGCCATCAATTCTTAT
ATATTGATCGTGGAACTCATTGGTCCAAATTATCGAGTGCTTGCAGCGAA
CGTAGCTGGCGTTGTATGGGGTATCGCCACAGCTGTATTAGCACTGAAAG
CATTTCTTATAGATGATTGGCGTAACCTATGTATTGCAGCTTCTGCTCCT
TACTTTGTCTTGGTGGTATTGGGAATGTTTCTCCCTGAATCAGTACGCTG
GTTGAATGCCAACGGAAGATCAGAGGACGCAGAAAAGATTTTACACAAAG
TGGCAAAATATAACAAACGAACAATTGAGAATGTTTGTTTGAAACAAGAA
GTTGAAGATCAAAGTGGATATTCATATCTTGATCTTTTCAATACAAGAAA
AGTTCTGAAAATCACATTATCACAGGCCTACATTTGGGGGTGTCTTGGAA
TGGTATATTATACATTGTCATGGGCGTTTGCAGATCTGGGAGGTGACATG
TATCTGAATTTCATTTTGGCATCGATTGTGGAATTACCGATGCACGCTGC
TTGCGTTATTTGTCTACAAAGtttcGGACGCAAACGTACAGTTGTGGTAT
CGCTCTTCCTCACTGTAGTATTCACGTTGGTTATCATGATTCTCATTTAC
TTGCAAACAAAACATGAAGaaatcaaatTGGTGTTTGGTTTGTTGAGTAA
ATCATGCATTTCGTTAGCTTTCATGTCTTCGTACATGTGGTCCGCTGAAA
TCTTCCCAACCGTCGTTAGGACGCAAGGGTTAAGCTTCAACATCGTGACG
AGTCGACTTGGAGCTGCTGTGTCACCTTTTACAAACAACCTGGACTTGAT
CCATCCTATTTTACCATTCTTCGTAATCTGTGTATCAACAATAGTTGCGC
TTTTCATGTGTCTCTTCCTTCCCGAAACGCTGGGAAAACCAACGAGGGAG
AAATTCGAGGATATCTATGACGATTGAGAAACTTGATATCtgcgaaaaaa
aagaagaatggaAAATTTATTTCGTTTGATATTTCTCTGCATTGTCGATC
TTGTAATAGGTTTCAGGGTTGAAAAAGTTCAAGAGCTGTAAAAAACTgaa
gatcttatttttttggcattaACCCCTTATATTCGAAGAGGTTGGCCAAA
TAATTAATTGGAAAGAGTGTTATAAAGATTGGTATTTTAAGtactaaaat
caaaatatttttctagaaattaTTTAGTGTGAGGACGCTCACTAGGTAGG
CT
Run BLAST on NCBI

transcript from alignment at sc0000039:580135..596556+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004050 ID=TCONS_00004050|Name=TCONS_00004050|organism=Clytia hemisphaerica|type=transcript|length=16422bp|location=Sequence derived from alignment at sc0000039:580135..596556+ (Clytia hemisphaerica)
agTCAATAAAATAGTATACAAATTTTTAAACACTGGTttacaaaacttta
aaacatgAAATAACAAAGAAGAATGATGATTGTTGGTGAATATGTTCATA
CGAATTTATCATCGCCTTCATCATCTTCACTGCTGCTACAACAAGTGTCA
CTGTATGAAAGAAAATTAGGCACAACATCTCGTGCCCTCCTATCAAAGCT
CACAACATCTCGCGCCCTCCTATCAAAGCTTACAACATCTTGTGTCCTGC
TCTCGAAGCTTGTCAGACCATTGGATATTTGATCATGCCAACCAAAAGgt
ttgtgattttttatttcgtttgTTTCTAAGGGTGGAGGAGAGTATTCTCG
GTCCCAAGCCCCTTGTTCATCCTCCTCGTAAAATTCTCCTTCGTATTCTA
TATTATGATATAAATGTTCTtcgattttctgaaaatgcttaTTCTCGTAA
ACAGATTCTTTTCGAACTCTTTTTAATTGTTGCTGAGAAACGCTCCTCAA
TGGCGACAAAAACACGTCATCGTCGTCCAGGTTACCAAGGTGATTATTTT
CCATGATGGGAGAGAAGTAGTGATCATCATATTGCTGATGATAAACATCC
TCATGTTGTCGAATGTTTCCGTTCGAATCGAACATTTCTGAAGAATTTGC
TGAAaacacaaaacttttcaaagaatcgatGACGCTGGTTTTTCTCTGCT
TCTCTGGAGAGTTTGGATACTGGTTACTGTTTGATAGACTCCAATTAAAC
ACTTTTGACATATGAGTGTTATCCCATCGCTCTGGTAAGCTCATCTTCTT
ACGAGACCTGTCTTGAACCACTTTGTGATTTTGTAGATCACCATCATCTT
TCTCCTGATCTTGCAGTTGATCGAATATTTTCCTGTATTGACTGTTCTCC
TCAGCGTTTCCTTGTCTTTTCAATTCGTTGAGAGATATAAGGCGATGTTG
GCGAAAGAGTGTTGGTTGTTGACAGGTCGTTGTTGTATGGCGTCGTGTAT
TTTGTTGAGAGGTCCTCCcttcaacaatattttcatcTTTCGTAACATTT
TGTTGAACTGGTATTGATTGTTGTTTCTTTTGGTGAACTTCTTTTAATCG
CTCTTTATCTCGTTCTGAACGAATATCCAACAAATTATGTAAAGGATTCA
ACGTGTTATTGTTATTGTTGCAAGTTTTTCTCTTACGGTATCTTTCAATA
ACTATTCGTGGCATATACTGATCAACAAATTTGTCGAGAACacttttttc
tgtgttttgtaCTGTATTCCATCTCGACTGTAAAGGTTGTTGTGAGGTGT
GACTTTCAGAGATCCCAGAATCGAAACTTTCTTTATTGATCGAACAAGCT
TCTTTGTATTCTTTTATCCTTGCCAACCGTCTTTTTTCCTCCTCCTTCAA
AAATTTATCCTGTTCACGGAGCATCCGTCGTTGTCGACGTTGCACGCCGC
GGCCAACATAACAAGCTATGCAGACAGGTATTCCAATAATGGCAGCCAAG
ACTACTATAGGAGCGACTGTTTTCAACCATTTCAGCTGGAGATGAGAATC
TTTTGGTTTGCTCTCTTTACAATCACCATAAAGTGTCATATTGACGTATG
TAACATCCATCAAAATTGATAACTCTGTTTTGAATCTTTGAGAAACTACC
GACTCATCAAAAAGTCGATTGCGTAACTTTTCGATCGCGTCACGATTGCA
TTTTTTTCCATTGTCGATATTTAGGAACGAAAACTTCAAACATTTCTTTG
CGAACTCTTTGATTCTGACATTTTCGATTTTCGTTTCCATTAGCCTATCA
GCCAAAATTTTTACTAAAGCATATCGAGTATCCAGTCTATTCATGAAATT
TTTAGCAGACAAAGTTCGTGTACATACTTTGATTTCGTGTAAATCGTTCA
CGAAAGGTGACGTCACGAAAATTTTTAGCTCTCTGTAGCTTCGATAATTA
TTGGATAAGACTCGAATGAAATAGGTGGAAACTCCTTCGTTTCCTTGCAG
AGGAAAACCATAAATTTCATTGCTAGCCCATTTATATTTCAACCAAGTGT
TTGAGAAAATGGGCTGTTTATCTTCCGTCAGAAGTTCGTAGTAAATATTC
CCAGCGTGATCTCTGAGAAATTCTAAGGAGTGGATTTTCTTGTAGAATGC
TACACCCACTGTGACGTGAAATTCTTCCACCTGGCAATGAACTTCATTTA
AAACGACCACCAATACTAGATATACACCCCAACACTTCATTCTCGAATGC
TTTGGTGTGTTTTAAAGTCCTAATGAAGAGTTTCGTAGATTATACTAGTT
TTGGATATTTAAGGAGACCTTTGGTTGATTAATTTTCATCTTTTCTATTA
TCCTTTCATTCTgtatttcatttgttttgattttgccgATTCATTTCTTT
TTAAGCCGTGATTAGATGATAATCAGTATTTTATATGTTTTTcgtttgaa
ttttattttgaggGTTGTAATGAAACTATTAAGCCCTTTGTACATATCAA
AACTGATTTTTAGGCTTTCCTAACTGTTGCACTGTGACATTTGAGGTTGA
GGGTCCCAGAGTACCAGACACTTTGTATTCCATTTCTCTCCCCTGGTACT
GTTTGGACACCCTTTGGACACAGTAGgccttttttaaatgaaaattaagC
TTTTTTTGGAAGTAGATGTGAGGTTTTAAAATACTTCTACTCGAAATTTC
TTTTTACAAGTGAATAATCCATCATTGTAAAACCCTTGAAATTCAGGTAC
TAGGTTAAGATATAATCAtgttaaaaatacattttcaatgtattgaaaat
aaagataaatttCCCCTATCTATACTAAAACTAGGAGAAAGTGTCCTATT
TGTTGTCTAAGTTTTTGACACACTGTGGTACTATTAAGGATTCATCCCAT
TTAAGTCAACTACATATCTTAGAAATTGTTGAGTCTCTTCTTTTTTCGGG
AAAAGTCTTCGACGTTACTGAGTCTAATAGCTCTTGTTTGTTCATGCATG
TCACAAGGAGTTACTTCAGACAAATACCTCTCCCTAAattcaataaacgc
cccccccccaaaaaaaaaaaaatccttcgTAGGAGTTTATTTAATAACAG
CCCTTTCTTTTcgcccccttcgaataaacgcccctcttaaaataaaaata
ttaggtgtttattcgaagtaatagaTTACTCATTCTCTCGATTTGCTGac
tgaaaagaaaagaacggcaagttttttcaaaatatgaaaaacgcCCATGG
GCGTGGTGGTACAGGCAAGATTCGCTCTTACTCTGACAGTATTTGCTACC
CAACTTTTGTTTGCGTGACTGTTCGGATTGATTTGGACTTCTTCCGATAG
TTAATATACGTCATTCGGATATtaatccaattttcaaaaaacttgaatTT
TGTAGAGGGTTTCGACCTAAGTAGAATTTCCCATGGCTTTAAGAAAAAAC
GCAATAGTTTCTATTTCGATCGCTTTTGATATTTTAGTTATCAGATTTTC
CGGAGTGTATTTTTGATAGAAAGAAGAGAATATATCTTATGGAAGTGGGT
TTGAGCTTGTAAGATGCTTTTTTCGATTCGCGAATCTAGATCTAACCTTG
TAGCTTTTCAAACACGGATATATTCACAGACACAGCCTCGTATCTGATGA
GACAGGAATCGAAAGCAGTTTCTGTTGATAAATTGTTCTACTTAACAGAC
ATATTGATAGATTGATGGGTGTGTGAAGGTGCTACTACAGAAACTATAGA
CGACATTTGATAGAATTATTAATCATACTTGATCCTATCCCCTCTATATT
ACTTTCCTCACAAACTTCAAGGATTAggttttccttttcttttaagATGG
AGTAAAAGAAAAGAGTTGATATTTTTCCCACAAAAACTCACTTTCTTTCT
TTGCAAAATTGTAATGACATATCAATTATTGATTGGTCCTCCTTTTTCAA
AACTCtcagttcttcatttttcagTCAAAAGGAACCATTTTTATACTGTG
TCATTTTTCATTCGATTGATGTTAAACAATCATGCTCTTTTCGATTCTGA
CAATCTGCATCTTATATTGTATCGCTCAATCCTATCTATCAGAAGGACGT
GATAATGTCCCCAAATTATCTCAACGTCGACATAAACGACAAATCAGAGA
TTGGAATTATACAAGATTATTGACACCGAACAAAGAAGTGAGAGTCGGTC
GTCTGACGTACATTTCAATACCGTTAGAAGTCTACGAAGGAAAGACTTAT
TTTTCGGACGATTTAACATTTGAACTTCGGACAGAAGATGATCGTCCGCT
GAAGCAAACTTCATGGATTGAATTTAACCAAGAATTAGGTCGAATAGAAG
CTTTCCCGATGAGAGGTAATGAAGGCCTATTCCGTTTTCTCTTGATACCG
TTGATGCATGGTCAAGCATATAATCACCGATATTTCATTAAAGTCAATGT
GACCAAGGATGAAACTGAGTTCATGCATCGTGTTATTTTCCACTTAGGAC
TTTCATCATTCAGGATGTTTCGTGAAAGGAAATTACGAATACAATTCGTC
CAGATCCTGATCACTTACTTCCGCTCTTTGGGAATGTTGGTCAAACGAAA
CCATATCCAAATTATGGAGTCCGATTCTGTGTCCGGCAATCTTGTCTGGC
AACTAACCAGTGCTAAAACCTCGTCATGTGGTAAAACAATTACTCGCGAT
CTACCAAAATTTCTCCTTCATGACCAGGGTCAAAAACCAAGGCCGAATCT
GGTTGCAGCATTTTCGGGGATTAATTTCCATATCGATAAAGTGAGAATCG
ATCTTACACCTCCTTGTTATATAGTCCAGCGACCGACAATTGAGGAAGAG
AGTATCAATAGTTACTTAAAACCATTAATTATCGTATTAGTGACTATTTT
ACTGGTCAGTCCCATCGTTGttgccatttttctaagaaagaaaATGCAAC
GAAACCGCACTAAATATCAAAATCCGACTCCAGTGACAACTAATCAAATG
GTGGTCACAAATCACATGACTAATTACCAAGGACAGCTTGagccgaaatt
ttcattttcgtgTTGGATGTTTCGTAGAAAAGGGAAGTCGTATAAATTCA
ACCAACGTATACGTCAACAAAACAAACTCATCCCTGACAATATTTTCGAT
GCGAAATATCTACAGCGCGAGCGCCTACAGTACGCTTCGAATAACCAGTT
AAAACAACCTGCAGTTATGTCTGGTCCAAATCGATCACGCGGATACCAAG
AACAATTTACTATCGGCTATCAagagaactcgagaaaatcccTCTCAATC
GCGAGTTCCAATCCCTCATACTCAACTAGCCAAGATACCCCGCACTCTTC
TTTCTCTCTTCGCACCTCACCCATCCACAATTTACAATCAATCAAAGATC
CACGCTTTCGCCACCTGAATGCGAGCACAGATTCTAAAAATAGTTCCCGT
TGTCTGGAGACTGTGCAGAATTGCGTGAGCAAGAATTATGTGGTGCACCA
CGAGAGAAGGCCCTCTGTACACCTCATAAATATCAAACCTAAAACGGTCA
ACATCCATACAACCCACCCGAAACANTAGCTTTTCAAACACGGATATATT
CACAGACACAGCCTCGTATCTGATGAGACAGGAATCGAAAGGAGTTTCTG
TTGATAAATTGTTTTACTTAACAGACATATTGATAGATTGATGGGTGTGT
GAAGGTGCTACTACAGAAACTATAGACGACATTTGATAGAATTATTAATC
ATACTTGATCCTATCCCCTCTATATTTCTTTCCTCACAAACTCCAAGGAT
TAggttttccttttcttttaagATGGAGTAAAAGAAAAGAGTTGATATTT
TTCCCACAAAAACTCACTTTCTTTCTTTACAAAATTGTAATGACATATCA
ATTATTGATTGGTCCTCCTTTTTCAAAACTCtcagttcttcatttttcag
TCAAAAGGAACCATTTTTATACTGTGTCATTTTTCATTCGATTGATGTTA
AACAATCATGCTCTTTTCGATTCTGACAATCTGCATCTTATATTGTATCG
CTCAATCCAATCTATCAGAAGGACGTGATAATGTCCCCAAATTATCTCAA
CGTCGACATAAACGACAAATCAGAGATTGGAATTATACAAGAATATTGAC
ACCGAACAAAGAAGTGAGAGTCGGTCGTCTGACGTACATTTCAATACCGT
TAGAAGTCTACGAAGGAAAGACTTATTTTTCGGACGATTTAACATTTGAA
CTTCGGACAGAAGATGATCGTCCGCTGAAGCAAACTTCATGGATTGAATT
TAACCAAGAATTAGGTCGAATAGAAGCTTTCCCGATGAGAGGTAATGAAG
GCCTATTCCGTTTTCTCTTGATACCGTTGATGCATGGTCAAGCATATAAT
CACCGATATTTCATTAAAGTCAATGTGACCAAGGATGAAACTGAGTTCAT
GCATCGTGTTATTTTCCACTTAGGACTTTCATCATTCAGGATGTTTCGTG
AAAGGAAATTACGAATACAATTCGTCCAGATCCTGATCACTTACTTCCGC
TCTTTGGGAATGTTGGTCAAACGAAACCATATCCAAATTATGGAGTCCGA
TTCTGTGTCCGGCAATCTTGTCTGGCAACTAACCAGTGCTAAAACCTCGT
CATGTGGTAAAACAATTACTCGCGATCTACCAAAATTTCTCCTTCATGAC
CAGGGTCAAAAACCAAGGCCGAATCTGGTTGCAGCATTTTCGGGGATTAA
TTTCCATATCGATAAAGTGAGAATCGATCTTACACCTCCTTGTTATATAG
TCCAGCGACCGACAATTGAGGAAGAGAGTATCAATAGTTACTTAAAACCA
TTAATTATCGTATTAGTGACTATTTTACTGGTCAGTCCCATCGTTGttgc
catttttctaagaaagaaaATGCAACGAAACCGCACTAAATATCAAAATC
CGACTCCAGTGACAACTAATCAAATGGTGGTCACAAATCACATGACTAAT
TACCAAGGACAGCTTGagccgaaattttcattttcgtgTTGGATGTTTCG
TAGAAAAGGGAAGTCGTATAAATTCAACCAACGTATACGTCAACAAAACA
AACTCATCCCTGACAATATTTTCGATGCGAAATATCTACAGCGCGAGCGC
CTACAGTACGCTTCGAATAACCAGTTAAAACAACCTGCAGTTATGTCTGG
TCCAAATCGATCACGCGGATACCAAGAACAATTTACTATCGGCTATCAag
agaactcgagaaaatcccTCTCAATCGCTAGTTCCAATCCCTCATACTCA
ACTAGCCAAGATACCCCGCACTCTTCTTTCTCTCTTCGCACCTCACCCAT
CCACAATTTACAATCAATCAAAGATCCACGCTTTCGCCACCTGAATGCGA
GCACAGATTCTAAAAATAGTTCCCGTTGTCTGGAGACTGTGCAGAATTGC
GTGAGCAAGAATTATGTGGTGCACCACGAGAGAAGGCCCTCTGTACACCT
CATAAATATCAAACCTAAAACAGTCAACATCCATACAACCCACCCAAAAC
ATCACAGAAAGcaccaaaatgtgaaaacatCATCTTCCCTACACATCGAT
AAATATGCTCGCTTCTCTCGAAGACACTCCGATGATTCGGCGCGCCGTGT
TCATCGCCATGACAACAATAAAACGCCTCTTCGGATGGGCGGAAGTCGAA
GCGCCACTTGTACGCCCACTAAACAAAGCAATGGTAAACTGGGCGGAAGT
ACAAGTGGGTTATTTTCACGAAGCATGGAACACGGCTACGGAACACCGTA
TGCAACACCCCCGCAAAGTTTCGATCGCTCGCTCATTGATATCCGCCCTT
TATCACGCCCTGATATTCAAGTTTACGTTCAAAACGCCCCTCCATCTTCT
GGGGCAGAAAGGAAATCATCTTTAGTAAAACGTCAAGAGTGGATGGCATC
AAGACATAAAAAAGCGTTCGAGATTTCATCTTATGAAGAGATACAATCGC
TGCGTCAAATCCCTCAATCGGATTATGATGAAGATACTGTATGATAAGAA
ACCTTTGAGAAACCTCCTTTTTATGGATTGAATGTATTGACTAGCGTCAG
GACTGTGTTATCTTTATCATgtgattttttcatattttccatACAAACGA
ATAGAGACAATATGGATTCACgagtttaaaaataattttgtgcCAACAAA
CAACCTCTTATTAACCCTGAAATATTCAACATAACGGCAAACTCGTCTAT
TATTGGGTCCATGAATTCGGACTTATTCAGACTGTTTTTAATTAGAATTT
TCAACtatttaattatattttttttaaacgaaCTGAGAATTCCTTTATCC
ATAAGTAGAATGTCATGGTCatatcttttacttttttttaattcgtgtca
aaaacgtctaaaaactATCAACTTGATAGAAACAAGCGTGCATAAGTGTT
ACTATACACCAGCAACTCGATGTGTTGCGAGCACGAGTTGGCAGAGTCAA
GTAAGCACATTTATTCCCCTATCATAGGATAGTGAATCTCAGATTCAGGT
TTTCTTTCGTCCACTATcgattttcttttcttgtaaAATTTGCATAGTTT
AAACActtggaaaataatttgaaattaagGATTCATCAAATTTAGGAAAG
GCGGTCACCAcggaaaaagagagaaaatttcaattttNATTGGGTCCAGG
AATTCGGACTTATTCAGACTGTTTTTAATTAGAATTTTCAACtatttaat
tatattttttttaaacaaactgAGAATTCCTTTATCTATAAGTAGAATGT
TATGGTCATATCTTTTACCTTTTTTTACTTCGtgtcaaaaacgtctaaaa
attaTCAACTTGATAGAAACAAGCGTGCATAAGCGTTACTATGCACCAGC
AACTTGATGTGTTGCGAGCACGAGTTGGCAGAGTCAAGTGAGCGCATTGA
TTTCCCTATCCTAGGATTGTGAATGCAGTCCTAGATAGGGCCTGTTCATC
GGAAGGTTCATCTATTCTTGTAAAATTTGCATAGttggaaaataatttga
aattaagGATTCATCAAATTTAGGAAAGGCGGTCACCAcggaaaatgaga
aaatttcaattttgttttcagTATTGTGGTTGATGCtaacgaaaaaaata
tttggtcGAAAGCTCAGTAAGGCGTcaactctttttcttttcagttttct
CTATTCTGCTTCCCATTGTGGTTTAGATTGTGTTCATGATTTTGACAAAC
CTAAACCCCGTTGTCTTTATCCCTTTGTCGCTTTTTTTCAATCCAAAATA
TACCGTGATTATCTCAGTTTGGCTTTCTCTGAAATTCAACCTGTGATGAC
ATTACTATTCATAGAATCAAAGATGTCCTCATATTAAACAATAaacattt
ctattttttaatcattcctcCGGAAACTTTGACTGACTCTCAAATCTACT
TTTCTACGTTTGCAACTTCTAACTGATTCGACTTTCATCAAGATCTGGGA
TGATTGCTATGGCTACCTGGTAACTTTTGTTCTAGTTAAACACGCCCTGA
ATAGAATCCCGATTGTGAATTCAAGCGGCCTATCTTTTTTCTACAGAAAA
CGTCACACTCCTTCCATCCTGCCATCCTGTTCTTAATATGTTTTCAATTG
AGAAAGTGAGAAAcctctcctgaaaatttttttttatctcggGATCCTAC
CTTGTTTCTTTGGTAGGGCCTACTGCCAATTTCTTCCcgattgaaaagtt
gaaaaaaggtttTATGGTAATATTTTGTCTGAAAGAAAAAGACTCTAATA
TTCGATCAGCAACTAGTGGGTACTCGAAAAGACGAAAAGACATTGGCCCA
AAATAAAACACAACAATTCAAGCAATATTCATTTAGACTCTCTAACACTT
CTGCCCTACTGGGGTCCTTGTGTATCAGTGGACATTTTTTGACTGATTCA
CTACTCCCTATTGTTGATTTGttgtttatataaaaaatacagCGGGATTC
AAAAGATTTGAGAAATGTATAAACTTTTTGAGATACTGGCTGATTTACTG
ATTATTTTAACAGAAGAGCAATAGTTGCTATGGCAACAAAACTGTTGCTA
TGGCAACAAGAAAATCTTTTCTGTATAATTTNTAATAGTTGCTATGGCAA
CAAGAAAATCTTTTCTGTATAATTTCCGTCAATTATTCTGAATGAGAGTA
AAACTTCGCACATTGCCTAGATTCTTTTGGGATAAAGTTGTTTTCAAAGG
GTTTTTGGAATCAATTATCAGAAGAAAATTGCATAACTTTAGCCCCGGCC
ATCTAAAAGCGTCAGCGATTGTGTTGCGATGTTGTATCGTAGTTTTGTGG
AttggtttttcaatttttgaagatGAATACCTCTACTGAACATGAAGAAC
TAAAGACTGGGAGCGAGTCTGCTTTAGACCAACAACAACATGTTTCACCG
GAAAACACCCCAATTGAAAAAGAGATATTACAACATGAACAAGACAATAc
gcatgaaaatgaaaaagacgaACACGGCAcaaatttgtccgaaaatcaga
TAGCGTCCGATAGTAAAGAGATAGAAATAATTGATATAGATGAATTTTTA
ATACGAACTAAAGAATGTGGTCTTTCACAATTCGCAATAGTGTTGGGAAT
GATGTTAGTGACGTTCACGTTAGCATATACACCCTTCATCTTCTATTTCA
TTGGTTTTGACCCACATTGGATCGACACGGAGAATGGAACAGCTCATTAT
AGGGAAGATAATTCCAGATGTTTTCTTAATGAGTCTCAATGGCGGTACGA
TCATGAGAAAACCACAGTTGTCACAGAGGTAAACAAATTGTTTAGTTTCA
TTTGATTGCCTTTACAATATCCATACATCATGATTAACTAAAATAGGGAG
GACAAAAGACAGATCAGACAGAatctcatttttttgaaaaaagtagccac
gagaagttttttcgcgttggtgcaatgcaacatgctctatcccaccaaca
caagaaaaaaagtgcgtgtctcatggtttcttttttgtttcatgggacaa
aaagtgagggaaatacccaaaagacacgctgattttgtcccttggacaaa
agtgagagaagcaTTTAtgttatcaaaagaaaaatggggttgagacacga
gaaagcgtttcaggttggtgggatggagcatgttgcattgcaccaacgcg
aaaaaaaattctggTATCCCATAGCCTTTACTGTCAAGAATTATTGTGAA
AAAATCCCTTGGTAGAAAATTAAAATCCTCCCTGGTGATACGTTTACTTT
ATCTAAGAACTCAAACAATAACACCTACCacttttcttattcttttatag
tatgGTTTGATTTGCGATAAATCCTGGATGTTATCAATGTTGGGATCCAT
TGTGTTTGTTGGATGGGCTTTGGGAAGCTTCGTCTTTGGATTTTTTTCGG
ATAAATATGGTAGAAAATTAGTCATGATACCCTGTTTATTTTTTGATCTC
TTCTGTTTATTTCTTCACGGATTCATTTCTTCAATATGGGTTCTAATGGC
TGTTCGGTTCATTATGGGATTCTTTCACGCTGCTCCTGCCATCAATTCTT
ATATATTGATCGTGGAACTCATTGGTCCAAATTATCGAGTGCTTGCAGCG
AACGTAGCTGGCGTTGTATGGGGTATCGCCACAGCTGTATTAGCACTGAA
AGCATTTCTTATAGATGATTGGCGTAACCTATGTATTGCAGCTTCTGCTC
CTTACTTTGTCTTGGTGGTATTGGGAATGTAAGTTAATCTTATCTAACTC
TATGAATTacttttttagctatttttttttctttaaagatacCATAACGA
GAAAATAACGAGTCTTATGGGAGTAGTTTTGATTGAAGGGGAgctttgac
aaaatatcaattttgtcTCCAAATAGCAGATGCTATTTGACAATAACTCA
TAATATCTGTCGAGCTCATTCTTAGGATTCGGATGATTTCCACCTTGACA
TTCAAGTCTCATACTATAGAGATTCTTGGTTGGACATCTTCCTCTAAAGA
CGTTTCTAGAAACTTCCTTATTCAAAATAATGCAATGTTTTCCAGGTTTC
TCCCTGAATCAGTACGCTGGTTGAATGCCAACGGAAGATCAGAGGACGCA
GAAAAGATTTTACACAAAGTGGCAAAATATAACAAACGAACAATTGAGAA
TGTTTGTTTGAAACAAGAAGTTGAAGATCAAAGTGGATATTCATATCTTG
ATCTTTTCAATACAAGAAAAGTTCTGAAAATCACATTATCACAGGCCTAC
ATTTGGTACGTGTTTTGTCTTTTTACAATATCTTTTCGCCATACATGTTT
TATATAAGCAAGtaatatcaggctcgcattattcTTAAAATTCTATTGAG
AGCCATTATTTTGGTAGCAAAAACTGAGCacgcatatgcttataaacgtt
tcATTCTTTAGGACTCGGGACACTTGGGCAATTTCAGggggaattttttt
cattctaaagaagaattttttcaaaaactgttttGAGAGTGGGTAATCAA
ATAATGTCCAAAAAATTTGTTATGGGCTAAAACAGACGTCACAAGCGAAA
ATCCTTGGGACCCGAAATTTGACGAAAATTCAAAAGTCGCTAAATTCTAA
AACCACTTATACCATTAGGATATTCTCGAAAAAACAATACCATAGAGGAA
TTTTAGGCGGATATGGTCGAATTTTCAACGTAACTCGAGAGAAACGGCGT
CAAAGTGACGTTTTCTAAATGTTTGGCGTTAACCTTATACTACCAAGTTA
TACTTCTTGAAATTACCCCTTCATTCGAATTGATTTGTGCATGTCCAAAT
TATATACTTATACCAttggaaagctctcgaaaaacgaTATGGAGGACTTT
TAAAGCGAATATATGGTCGATATCTCAACGTAACTCGAGAAAATGAACGC
CAACATTTAGAAAACGTAACTTTGACGCCGCTTCTCTCGAGTTACTCCGG
AAATTGTCGTCCCGGGTCCTAAAGAATTATATTTGTGAAATGTTtcaatt
tgtactagtaatcgtatggtttggagtgcaattaacgattaatcacgagt
aacaaaggagaaaatagtaatttgcacgagtccgaaggacgaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNagtgattaatcgttaattgcacgacaaaccatacgattccgaggt
aatcgtcagtaaataatcattagtaaatcatagtttctttagaaaaaggg
aaaatttttgacattcgaaTTGCAATGCAACTTATGTACACAAAGcgaat
ttctttgttcttttttatattggagaaaaaaaatgtctttgttttttatt
atatagtaaaaaaaagtctctgacacaggacttgggacaaaaaagaataa
ggggacaaaagtgtccccccgccgaagagtgcaaaaagtggtaatagtgc
aattaacgattaattgcactcctctaaaccaatcagattcgagtaatttt
gcacggctgacgattactaTAATAACTTCTACATTTGTTTCAGGGGGTGT
CTTGGAATGGTATATTATACATTGTCATGGGCGTTTGCAGATCTGGGAGG
TGACATGTATCTGAATTTCATTTTGGCATCGATTGTGGAATTACCGATGC
ACGCTGCTTGCGTTATTTGTCTACAAAGGTATACTTCAATTTGCATTTTT
GATGATTTGGCTCTAGATTAGATACTTATTTCTCGACCGTTTGGCTAGGG
CTAGTCCTTCTTAAGCTTCGAAGATAACGTTAAAAAAGGGTCACCCTTTA
AAAGGTGATAAGCCTATTCCTAACagaatctttcttttttgtttttagtt
tcGGACGCAAACGTACAGTTGTGGTATCGCTCTTCCTCACTGTAGTATTC
ACGTTGGTTATCATGATTCTCATTTACTTGCAAACAAAACATGAAGGTAG
GACCTATATACAACCGTATATTTTGTGCCAAATCCTATACACCTATACCC
TTAGCGGCGCGGTCGGCTTTTTCTAGGGACTTGTTATGAAGTTACAAGGA
CGATTTGTTCTCGACACACGGTATTTCGCTGAGGGTAGATAGGTGTATAC
aaactttattcaaattttaaaaacgtttttttatttcaactatCGAAAAC
AATAAACCAAAATATGCGGAATttgtaattaaaattttaacgtGGATTTT
AAAAAGATCTTACTCATAGATGGTAGCGGGCCGGTTATATAATAATTTTA
ACTTCTACTACAGTGCTCAAATATTTTTCTACCTAAGATAGGGATTAACT
GGGGCAGGAAAATTTAGTATATATTTGTTAACTTTTCCCCcttttttcag
aaatcaaatTGGTGTTTGGTTTGTTGAGTAAATCATGCATTTCGTTAGCT
TTCATGTCTTCGTACATGTGGTCCGCTGAAATCTTCCCAACCGTCGTTAG
GTAAAAGTCCTTCTTTCAAATGCacgttattttataagaacataaacttt
tgaagcctcgcgatgttcttaactttttcagttttaagcctaataatgtt
cttaacatgttcttatattCCTAAGTTTTTTagtaaattttccctttttc
gtAAGAAATCGCGGGTATTCgggagtccgcaaagccttgaattgtaatta
actttttactaatattttggcaattgaagccttatgttcttatataattt
atttgtaaaaaaacgtgtaggaatATTTGTTTGACTGCAGTTAGCCCCTG
GTTCTCCCATTTTCACGCCTTCTTCGATTTTTACGGAAAACACCTCGCAG
CAAACTTTTTTTAGTAATTGTAAAGTTTGAGGGTGCAAGAATTTTAAAGA
GGAGTCCAGTTAtctttttaaaactgttttcatTGTTATTGTTACGGGTT
ATGGCTATACCTTCATAACATAAATGAATTAGTTATATAATCGACCAAAG
TCTCGTGAAAATGACAACAGTTAACATGATTTAAGTATTGTTATTAAATT
TTCTGTTCTAACAGCTTATGTAGATCATTTTGACACTAAGCCATCTCCTT
TCAGATTTGATTTATTCCAGACAACTCCCGTGTTTTTTCCACTGTTTTTC
TAATTATGCCCGGCTCTATGAGACGATCTATTTCTTAGTATATAAGTGAG
TCtgtgaccgcagtcggaggcgacgcaaaggctcctctttcgatagctat
tacccgaaggtagggaagGGGGCCACTCTCtctctccctggatttctcca
cttaccctcgatcccaacctcgttccctgcgcattatcagctttttgatg
attACTGATAgcgcgtcaatcagtaacgtaaataaagcctgggatacacg
ggacGAGGTTGCCTCGATCCTTCTcctaattgctgagcatcaagcagaga
ggcatcatgTTCCATTTTGAGGATCTTTGGCATGACCCGACTGGGGTTTG
ATCCCACAActttgcgaaccgtagccggatgctctaccaccgCACCACGG
TTCGCTTTTCGCATATTTCTTAGTAAACGTCTGAGTTGGAAATAATTTTA
TTATGAACTGTTGACACCCCTTCGTCCATTAAATTTCCTGGTCctctaat
tttaaaatttcttagtCTGTCGGGaactttttgcttctttttttgtCATT
CCCCTTGGGTTAGAATCTGACAGTTTATGTGTGTCTCTCTTTGGGCTGCC
TGGAAACTTGAAAAATGGTACACTTTGTTTCCTTGGTGGTTTAGTTTTCT
CGTAATCTAGAATTCTAATTTTCTTCTAATCTCTTATAGGACGCAAGGGT
TAAGCTTCAACATCGTGACGAGTCGACTTGGAGCTGCTGTGTCACCTTTT
ACAAACAACCTGGACTTGATCCATCCTATTTTACCATTCTTCGTAATCTG
TGTATCAACAATAGTTGCGCTTTTCATGTGTCTCTTCCTTCCCGAAACGC
TGGGAAAACCAACGAGGGAGAAATTCGAGGATATCTATGACGATTGAGAA
ACTTGATATCtgcgaaaaaaaagaagaatggaAAATTTATTTCGTTTGAT
ATTTCTCTGCATTGTCGATCTTGTAATAGGTTTCAGGGTTGAAAAAGTTC
AAGAGCTGTAAAAAACTgaagatcttatttttttggcattaACCCCTTAT
ATTCGAAGAGGTTGGCCAAATAATTAATTGGAAAGAGTGTTATAAAGATT
GGTATTTTAAGtactaaaatcaaaatatttttctagaaattaTTTAGTGT
GAGGACGCTCACTAGGTAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002271XLOC_002271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004050-exon-sc0000039-1491911889:580135..580432TCONS_00004050-exon-sc0000039-1491911889:580135..580432Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:580135..580432TCONS_00004050-exon-sc0000039-1510915933:580135..580432Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:580135..580432TCONS_00004050-exon-sc0000039-1575043694:580135..580432Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1491911889:591485..591912TCONS_00004050-exon-sc0000039-1491911889:591485..591912Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:591485..591912TCONS_00004050-exon-sc0000039-1510915933:591485..591912Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:591485..591912TCONS_00004050-exon-sc0000039-1575043694:591485..591912Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1491911889:592230..592439TCONS_00004050-exon-sc0000039-1491911889:592230..592439Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:592230..592439TCONS_00004050-exon-sc0000039-1510915933:592230..592439Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:592230..592439TCONS_00004050-exon-sc0000039-1575043694:592230..592439Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1491911889:593828..593962TCONS_00004050-exon-sc0000039-1491911889:593828..593962Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:593828..593962TCONS_00004050-exon-sc0000039-1510915933:593828..593962Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:593828..593962TCONS_00004050-exon-sc0000039-1575043694:593828..593962Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1491911889:594133..594230TCONS_00004050-exon-sc0000039-1491911889:594133..594230Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:594133..594230TCONS_00004050-exon-sc0000039-1510915933:594133..594230Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:594133..594230TCONS_00004050-exon-sc0000039-1575043694:594133..594230Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1491911889:594635..594734TCONS_00004050-exon-sc0000039-1491911889:594635..594734Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:594635..594734TCONS_00004050-exon-sc0000039-1510915933:594635..594734Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:594635..594734TCONS_00004050-exon-sc0000039-1575043694:594635..594734Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1491911889:596074..596556TCONS_00004050-exon-sc0000039-1491911889:596074..596556Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1510915933:596074..596556TCONS_00004050-exon-sc0000039-1510915933:596074..596556Clytia hemisphaericaexon
TCONS_00004050-exon-sc0000039-1575043694:596074..596556TCONS_00004050-exon-sc0000039-1575043694:596074..596556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:580135..596556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.708778	0.497488	1.01726	0.256152	0	0	0	0	0.228367	0	0.0787177	0.0150136	0	0.214365	0	0.000831357	0.264359	0.135458	0.189834	0.0615343	0	0.0328386	0.222981	0.654744	0	0.36054	1.41322e-08	9.13204e-05	0.236029	0.136411
Blast
[Close]
BLAST of TCONS_00004050 vs. Swiss-Prot (Human)
Match: S22AF (Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.904e-53
Identity = 134/420 (31.90%), Postives = 214/420 (50.95%), Query Frame = 2 
Query:  236 HLVSCSRSLSDHWIFDHANQKYGLICDKSWMLSMLGSIVFVGWALGSFVFGFFSDKYGRKLVMIPXXXXXXXXXXXHGFISSIWVLMAVRFIMGFFHAAPAINSYILIVELIGPNYRVLAANVAGVVWGIATAVLALKAFLIDDWRNLCIAASAPYFVLVVLGMFLPESVRWLNANGRSEDAEKILHKVAKYNKRTIENVCLKQEVE---DQSGYSYLDLFNTRKVLKITLSQAYIWGCLGMVYYTLSWAFADLGGDMYLNFILASIVELPMHAACVICLQS--FGRKRXXXXXXXXXXXXXXXIMILIYLQTKHEEIKLV-----FGLLSKSCISLAFMSSYMWSAEIFPTVVRTQGLSFNIVTSRLGAAVSPFTNNLDLIHPILPFFVICVSTIVALFMCLFLPETLGKPTREKFEDI 1465
            H  S   S++  W          LI ++S+ +S   S  F G  +G   FG  SD++GRK V +     D+     +GF  S       RF++G  +   ++ +++L+ E +G  Y  LA ++ G+ + +  A  AL  + I  WR L I  +    V+ +L +F+PES RWL + GR  +AE+ L+ +AK N++      L         ++G S+LDLF  R +L  TL   +IW    +VYY L+ +  DLGG +Y N  L+ ++E+P +  C+  +    FGRKRT+   L L  +  L++M L   + K   +  V       LL K  IS AF   Y++++E++PTV+R  GL    + SR+G  ++PF  +L  +   LPF V   + + +  + L LPETL  P  E F D+
Sbjct:   89 HFSSSFTSIASEWF---------LIANRSYKVSAASSFFFSGVFVGVISFGQLSDRFGRKKVYLTGFALDILFAIANGFSPSYEFFAVTRFLVGMMNGGMSLVAFVLLNECVGTAYWALAGSIGGLFFAVGIAQYALLGYFIRSWRTLAILVNLQGTVVFLLSLFIPESPRWLYSQGRLSEAEEALYLIAKRNRKLKCTFSLTHPANRSCRETG-SFLDLFRYRVLLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPSYPLCIYLINQKWFGRKRTLSAFLCLGGLACLIVMFLP--EKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLLLPETLNSPLLETFSDL 496
The following BLAST results are available for this feature:
BLAST of TCONS_00004050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AF1.904e-5331.90Solute carrier family 22 member 15 OS=Homo sapiens... [more]
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