TCONS_00004055 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004055
Unique Name	TCONS_00004055
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1214

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000039:635782..641732+

transcript sequence

>TCONS_00004055 ID=TCONS_00004055|Name=TCONS_00004055|organism=Clytia hemisphaerica|type=transcript|length=1214bp
GTCTTAATTTGGTGCGTAAAGACGGGGGTCAAAAACACGACAAGGTCATG
CTATATAAAGTGAATTTCATTACAATTTTAACATATCAGTGATTTTGCTT
TGATTGACGATAATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTT
TGCTGGAGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTG
CACAATGCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGT
GGAACGTGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCT
CTCCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCA
GACAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGC
GGTAGTGGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTC
AGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTG
GAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATG
AAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGT
GGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAATATCCAAA
TCGTCTTAGGCGGTCACGATTTAAACCATCCATCTGGTAGCGAACAAACT
CGAAATGTGAAACGCCTTATTATGCATCCTTCATACGGACGCTTGAACAA
TGATATTGCATTGATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTA
TACAGCCTGTGTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGC
AAATGCTACTTGACTGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACA
TCCAATCCTTCAACAAGTTGGCTTAACTATACAAGAAAATTCTCAATGTA
ACAGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCG
GCCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCC
ACTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCA
GTTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCT
CGTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGAT
TTGTTAAATTAACG

Run BLAST on NCBI

transcript from alignment at sc0000039:635782..641732+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004055 ID=TCONS_00004055|Name=TCONS_00004055|organism=Clytia hemisphaerica|type=transcript|length=5951bp|location=Sequence derived from alignment at sc0000039:635782..641732+ (Clytia hemisphaerica)
GTCTTAATTTGGTGCGTAAAGACGGGGGTCAAAAACACGACAAGGTCATG
CTATATAAAGTGAATTTCATTACAATTTTAACATATCAGTGATTTTGCTT
TGATTGACGATAATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTT
TGCTGGAGGTAGATATGACTGCTCGCTTATAATTCTATTGCTAACAACGT
TTATACTCGAGCCATCGATATGactgcccagctggcacacaacgttgttt
caacgtttatctaacgttgtatggacgttgtgaatgctagaaaaacgttg
aaacaacgttgtgtgccagctgggtgctCGCTTAAAATTATATCGCTAAA
AACGTTTATACTCGAGCCATCGAGTAAACCTGAGaaaccttatcggccct
ttttacaccacCCCTTATTGGTGTTATATTTTCGTCGCTAGCGTAATGAG
GGCCAGCGTAACGGATCGAAATTAAATTAGGGCTGGGCTAAAAATGAGCT
TTGGCGTGAGGGCCGTTGTAAAAAGAGCCGATAAAAAGCACATTAAAACT
CTATTTCGGTACGGTCTGAGCTCCAAAACTTCTATGAACATCTCTTTTTC
TCAAGATTTGAAATATATGATGATGCTACCTTTCTTTTCAGCATGCTCTG
ACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAATGCTCGACGAAT
GCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACGTGCGGTGGCAG
TGGAAGTGGTAGCAGCGGCTGTGAGTGTGTTCTTCTCTGAATATTTTCCC
CCTCCTGTATTGTAGTTTTGAGATTGTTAGGTCAACCTCCCCATAAGAAC
CCTGGAAAGCTCGAGGTCCttgacttttttctaaattcctaacttttttc
CGATAGGCTGAATTTTCCGAGTGAATTTCTGTATCGTTATTAGGATCATA
TTGCTCGAGTAAAAAAGGGCAACTTTCCGTCTGGGATCTAAAGTGGTCAG
GGGCTATGGCCTTCATCACCCAGTATGGTTGAAGGTTCATTTTCGATTTT
ATTTaatgcataatttcaatttgttGTCGTATTAGCATGTCGAGATCTCT
CCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGA
CAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGG
TAGTGGCGGTGTTCCAAGTAAGTGTTTAGACTTTCACCAAAGTCTGTAAA
AACCTCGGCCttgaagccttttgtttctttccattggaaaacttgaactt
gcgtttgTTTTGCTCGTTTGATCAAATCTCGAACCAATGCCAAGAGGAGA
ACTTGAAAActtgatcaaaaactgagcacaAAGGGCACTATAAGGGTCGA
AATGAACAAAtgtaaaaaatattacactctaagggtgtaaaatttggaaa
atgttgCCATATTTCGCCTGAAaacggtcgtttttgaatcgagtgccccc
ccccaggCCATGGAAATGTCGATAAAAAAATCTGACTTCTTCGCCTAAAC
TGGAAAGAGTAGTAATACCAATAACAAAGGATATGTTGGGGCTCTCCATA
AAGCACACAAGTCAACTTGATTCATAAAACAACCACATCCAGATCcttga
aaaatattctccaTTCTACCTTTGAAGGTTGCGCTGGCAAAGGCACTGGG
TTACCCTCAGGTAAGAATTACATTAAAATTCCAAGAAACTCGACCTAAAA
ATGGAAAGATAAAATGGACTCTTTTTGTCTTGGATATATATATCtaagaa
tttcttttcttttgaagcATTTTATCAAGTCTAGCGAGTTGAAATAAAAC
AAGTCCCTTACCTAATTTAAATCAATTAACTTGCAAATAAGTTCACATAC
TTTCGAAGAAGATGAAATAACTGATAACTTCTGTCTATGTATATTTCTAC
TCAAATTTAGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGT
CATTGCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCA
TGACAATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCC
AAATGGGTGGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAA
TATCCAAATCGTCTTAGGTACACGATAGTTATTTTCTAAGTAATCTAACA
ACCTGTGAATAGCTTCTTCGCCCTTTTTAAAGTCTAACATCACGTGACTA
TGGAGCGCCAAAAGAACAATAATAAATTCACTTATCTTTTGGCTATCTTT
ACAACAGAGTCCCACGGGATATATAGTCGTAACCTTTTAATAATGTCGAG
GTCGAGCTTTACAGAGAAAATCCGTGAGTAGTTGTTTAGAAATGTTGAGT
TTTTATCTGACGCAATATACCACTAAATCTCAAGATACaaaatgaaaagg
tattttgGAAGAACACGTGCTTTCTACAGGAAAATAGTACAAGCCAAAAC
TCTCATCCTTAAAAGGCAATCTTTTCGTTACAGGCGGTCACGATTTAAAC
CATCCATCTGGTAGCGAACAAACTCGAAATGTGAAACGCCTTATTATGCA
TCCTTCATACGGACGCTTGAACAATGATATTGCATTGATCGAACTCGACC
GTCCAGTAATGTTCACTGATCGTATACAGCCTGTGTGTTTGCCAGAGCCT
ACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTGACTGGTAAGAATCT
CTTTCCATCAAACCTTTCGTCAAAGATTATAACATCCCTGTCTAGCTAAC
ATGCCGgaaaatttgttaatttttctaatttaaggcatggcaataaataa
ttattttggaagCTACGCGTGAAAAAATAGAGAAGAATTTAGTTACGATT
CAGGCATGTAAAATACGCGTTAATGATTAAGGAAATTCAAGTCTAAAATT
TAAATCTAAGTTTTAATGTCAAAAGCTTGATATGCGCTATAATTTAATAA
TGCAAAACTTAGCCCACGTCTTAATATAGTAAGATTAATTGGGTTTTTTT
GGAAGAGTAcgctttaaattaaaaaaagttacaatatCTTGTATGATTTA
tctatttttaaggttttgtattgctttatgtttttatttctgTTCTGTCA
CGCTTTTTTCACATAAAATTGAGGAATGATAGAatttgttggacctacct
ggaggtcctataaattaacctttgtccgtctgttaccctgcttttctcga
gattggctcattaattTGTTCCgcatttttgcataaagatgtgtattagc
actgcccaaaaaaaaaaatccaggccaaaaatgccggaaatatgccggga
aaaccggctttttggcattttctagagatttcatcatttgtttttttctg
aattttcgaACTAAGATGTAAATCagcaatgcctaaaatatgacctagtc
cgattttcgatggaaatttttttctggccgaaaatgacagaaatatgccg
gaaatcaccgtttttgcagatttcatTGGATCTTTATaattcatattttt
gtttttcaaaaaaaagcatTATAATAAAATGCCCACGATTCAgtatggtt
caattttcaatgaaactgattttggtagcCGGAACAGCCGAAGATCACTA
GGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTTTCCATCATCGC
TTTAAACTACAGTCGACTTTCCATAACTTGAACCTCCTCAACTCAATTAT
CTCCATAAACTCGAAAGATTTTTTCGGTCTCTTGAGAAGATTCTTAGACT
ATTCTGCCTCTCTATATCTCGAATTTCCATAACTGGAACAATTACTGATT
ATCCCCTGGGCGTTCCAGCACTCGACTATATTACACTTCCCTACTTTAtt
ttatttcgtattttcaacactttctctccttgagNNNNNNNNNNNNNNNN
NNccaaaaatgctggaaatatgccgggaaaaccggctttttggcattttc
tagagatttcatcatttgtttttttctgaattttcgaACTAAGATGTAAA
TCagcaatgcctaaaatatgacctagtccgattttcgatggaaatttttt
tctggccgaaaatgacagaaatatgccggaaatcaccgtttttgcagatt
tcatTGGATCTTTATaattcatatttttgtttttcaaaaaaaagcatTAT
AATAAAATGCCCACGATTCAgtatggttcaattttcaatgaaactgattt
tggtagcCGGAACAGCCGAAGATCACTAGGAAACCGTTCGCTCGTCCGTT
CTTTTTTCACGATCTTTTCCATCATCGCTTTAAACTACAGTCGGCTTCCC
ATAACTTGAACCTCCTCAACTCAATTATCTCCATAAACTCGAAAGATTTT
TTCGGTCTCTTGAGAAGATTCTTAGACTATTCTGCCTCTCTATATCTCGA
ATTTCCATAACTGGAACAATTACTGATTATCCCCTGGGCGTTCCAGCACT
CGACTATATTACACTTCCCTACTTTAttttatttcgtattttcaacactt
tctctccttgaggtcagatctctgatcttcaccatatatattcATCAGGT
TTGTCCAATCAGCGTTCcggcttgttttttttttttggtttagtCGATTG
ATTGTAcattattttatagatttttttttctggttttGACAAGTTTTTGG
TTTGTtgggtttgaaaatttacacacGTGTATGAAACACTCAAAAGGAAA
ACTCGTTGTTATCGAAACAATTTTTTACCTACTATGGTCAGAGCCATTTT
ACAGAATGAGTCgtcttattttttgaataaatacatATTCTTGATCTAAA
CTGATAAATAATTTTCAGGGTTAACGAGAAGGAGAGATGACTGAGTGGTC
TGTGGTATCAGACCTCAACCATTTTACCGAAATATCATGGTTATTTGAAA
AGAGAATTTGATAGATTCAGCATCGccttttataaagtttttaaaatagt
TGTATCTATTTCGAGTAGAACTTTCTTGGAGTGTTATTGTTTGAGATGCC
TTGTAAACTTTTTATAAGcttttgaggctgaaatttgtaAAAAGATCTTG
AGAAATTATgtactgaaaatgaaatcaatGAGACAGGGGGGTATACAACg
aatagaaattgaaaataatctaaggctgaaaattaaattttgctaaGTAT
GACGAGCCTCAGTTTTAATTTCCCGTATGCTTCTAAACCTTGTGGCTTGT
TTCTATGGCGGTGGTTAAGCAGAAAATGGCACTCTCATCGgaggtttttt
attttttggcgagCCTTCTTCATAAGTTTTCATCTAGGAGAAAATGCAAA
CGAGAGAAATTTTGAACTATGAAAATTCATTGGAAGCAGTCCCAAGCCat
ggtttttcaaaatttattttttgatagcAGCACCTGAAAAGTCTTCAAGT
AGTGCCCATTCTCCGAGGGAACTGCTGCGGAGGACACTGACCACTCCCAT
TACACCTTCACAAAACCATGACAAAATGTTTTAACTTTATAAAAGATTTA
AACAAGACTAGTAATGATGCTGATAAGActcattcatttttatttaacaa
CAGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATCCAATCCTTCAA
CAAGTTGGCTTAACTATACAAGAAAATTCTCAATGTAACAGATTGAACTC
AAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAACCCAGGCA
CACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGTCTGTCAA
CAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTCACC
AACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCGTTT
TCCGTAATTGGTTGAACTGCTATATCAACAACTAGATTTGTTAAATTAAC
G

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002272	XLOC_002272	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:635782..641732 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28878e-06	0.315611	0	0	0	0	0	0.0487377	0	0	0	0	0	0	0	0.236014	0	0.454467	1.05169	0	0	0	0	0	0.628441	0	1.89312	0	0	0

Blast

[Close]

BLAST of TCONS_00004055 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.646e-47
Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 2

Query:  482 SSRVIAGENAKAGAWPWQIAMTMKDGRFFCGGSLVNAKWVVTASHCIDKQQASNIQIVLGGHDLNHPSGSEQTRNVKRLIMHPSYGR--LNNDIALIELDRPVMFTDRIQPVCLPEPTEQPAVGSKCYLTGWGKIQHPGSSHPI-LQQVGLTIQENSQCNRLNSKYVPISQQMVCAANPGTRQMGCHGDSGGPLVCQQPDGSFKLHGAVSWGSPTCTASDAWTVFARVSVFRNWL 1177
            S R++ GENA  G+WPWQ+++    G  FCGGSL++  WVVTA+HC          +VLG +D +  +   Q  +V R I HPS+    +NND+ L++L  P  +T RI PVCL    E    G  C  TGWG++   G+  P  LQQV L +   +QC +       I+  M+CA   G     C GDSGGPLVCQ+ + ++ L G VSWG+  C    A  V+ RVS F  W+
Sbjct:   31 SQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWGS--SITDSMICAGGAGASS--CQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNV-RAPAVYTRVSKFSTWI 257

The following BLAST results are available for this feature:

BLAST of TCONS_00004055 vs. Swiss-Prot (Human)

BLAST of TCONS_00004055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTRL	9.646e-47	40.43	Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ...	[more]

You are here

TCONS_00004055 (transcript) - C. hemisphaerica