TCONS_00004057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004057
Unique NameTCONS_00004057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004057 ID=TCONS_00004057|Name=TCONS_00004057|organism=Clytia hemisphaerica|type=transcript|length=1316bp
GTCTTAATTTGGTGCGTAAAGACGGGGGTCAAAAACACGACAAGGTCATG
CTATATAAAGTGAATTTCATTACAATTTTAACATATCAGTGATTTTGCTT
TGATTGACGATAATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTT
TGCTGGAGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTG
CACAATGCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGT
GGAACGTGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCT
CTCCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCA
GACAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGC
GGTAGTGGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTC
AGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTG
GAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATG
AAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGT
GGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAATATCCAAA
TCGTCTTAGGCGGTCACGATTTAAACCATCCATCTGGTAGCGAACAAACT
CGAAATGTGAAACGCCTTATTATGCATCCTTCATACGGACGCTTGAACAA
TGATATTGCATTGATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTA
TACAGCCTGTGTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGC
AAATGCTACTTGACTGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACA
TCCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTA
ACAGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCG
GCCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCC
ACTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCA
GTTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCT
CGTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGAT
TGGTTAAATTAAcgattatattatttttttagcaaagtTTTCTTTCTCAA
CGAACAAAGATCGCAAAATTAGAACATAAAAGACAGAGATAATACATCAA
ATTATATCCACTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00004057-protein

>TCONS_00004057-protein ID=TCONS_00004057-protein|Name=TCONS_00004057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MKLLVVFAALIAFAGACSDKSSYCRFFPRAQCSTNAIVRMQCPKYCGTCG
GSGSGSSGSCRDLSSNCYMFHSQCSNSYVRQRCPKTCNACSGGGSGGSGG
VPSCAGKGTGLPSGAQCGQVKVSSSRVIAGENAKAGAWPWQIAMTMKDGR
FFCGGSLVNAKWVVTASHCIDKQQASNIQIVLGGHDLNHPSGSEQTRNVK
RLIMHPSYGRLNNDIALIELDRPVMFTDRIQPVCLPEPTEQPAVGSKCYL
TGWGKIQHPGSSHPILQQVGLTIQENSQCNRLNSKYVPISQQMVCAANPG
TRQMGCHGDSGGPLVCQQPDGSFKLHGAVSWGSPTCTASDAWTVFARVSV
FRNWLNCYINN
Run BLAST on NCBI

transcript from alignment at sc0000039:635782..642446+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004057 ID=TCONS_00004057|Name=TCONS_00004057|organism=Clytia hemisphaerica|type=transcript|length=6665bp|location=Sequence derived from alignment at sc0000039:635782..642446+ (Clytia hemisphaerica)
GTCTTAATTTGGTGCGTAAAGACGGGGGTCAAAAACACGACAAGGTCATG
CTATATAAAGTGAATTTCATTACAATTTTAACATATCAGTGATTTTGCTT
TGATTGACGATAATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTT
TGCTGGAGGTAGATATGACTGCTCGCTTATAATTCTATTGCTAACAACGT
TTATACTCGAGCCATCGATATGactgcccagctggcacacaacgttgttt
caacgtttatctaacgttgtatggacgttgtgaatgctagaaaaacgttg
aaacaacgttgtgtgccagctgggtgctCGCTTAAAATTATATCGCTAAA
AACGTTTATACTCGAGCCATCGAGTAAACCTGAGaaaccttatcggccct
ttttacaccacCCCTTATTGGTGTTATATTTTCGTCGCTAGCGTAATGAG
GGCCAGCGTAACGGATCGAAATTAAATTAGGGCTGGGCTAAAAATGAGCT
TTGGCGTGAGGGCCGTTGTAAAAAGAGCCGATAAAAAGCACATTAAAACT
CTATTTCGGTACGGTCTGAGCTCCAAAACTTCTATGAACATCTCTTTTTC
TCAAGATTTGAAATATATGATGATGCTACCTTTCTTTTCAGCATGCTCTG
ACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAATGCTCGACGAAT
GCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACGTGCGGTGGCAG
TGGAAGTGGTAGCAGCGGCTGTGAGTGTGTTCTTCTCTGAATATTTTCCC
CCTCCTGTATTGTAGTTTTGAGATTGTTAGGTCAACCTCCCCATAAGAAC
CCTGGAAAGCTCGAGGTCCttgacttttttctaaattcctaacttttttc
CGATAGGCTGAATTTTCCGAGTGAATTTCTGTATCGTTATTAGGATCATA
TTGCTCGAGTAAAAAAGGGCAACTTTCCGTCTGGGATCTAAAGTGGTCAG
GGGCTATGGCCTTCATCACCCAGTATGGTTGAAGGTTCATTTTCGATTTT
ATTTaatgcataatttcaatttgttGTCGTATTAGCATGTCGAGATCTCT
CCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGA
CAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGG
TAGTGGCGGTGTTCCAAGTAAGTGTTTAGACTTTCACCAAAGTCTGTAAA
AACCTCGGCCttgaagccttttgtttctttccattggaaaacttgaactt
gcgtttgTTTTGCTCGTTTGATCAAATCTCGAACCAATGCCAAGAGGAGA
ACTTGAAAActtgatcaaaaactgagcacaAAGGGCACTATAAGGGTCGA
AATGAACAAAtgtaaaaaatattacactctaagggtgtaaaatttggaaa
atgttgCCATATTTCGCCTGAAaacggtcgtttttgaatcgagtgccccc
ccccaggCCATGGAAATGTCGATAAAAAAATCTGACTTCTTCGCCTAAAC
TGGAAAGAGTAGTAATACCAATAACAAAGGATATGTTGGGGCTCTCCATA
AAGCACACAAGTCAACTTGATTCATAAAACAACCACATCCAGATCcttga
aaaatattctccaTTCTACCTTTGAAGGTTGCGCTGGCAAAGGCACTGGG
TTACCCTCAGGTAAGAATTACATTAAAATTCCAAGAAACTCGACCTAAAA
ATGGAAAGATAAAATGGACTCTTTTTGTCTTGGATATATATATCtaagaa
tttcttttcttttgaagcATTTTATCAAGTCTAGCGAGTTGAAATAAAAC
AAGTCCCTTACCTAATTTAAATCAATTAACTTGCAAATAAGTTCACATAC
TTTCGAAGAAGATGAAATAACTGATAACTTCTGTCTATGTATATTTCTAC
TCAAATTTAGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGT
CATTGCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCA
TGACAATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCC
AAATGGGTGGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAA
TATCCAAATCGTCTTAGGTACACGATAGTTATTTTCTAAGTAATCTAACA
ACCTGTGAATAGCTTCTTCGCCCTTTTTAAAGTCTAACATCACGTGACTA
TGGAGCGCCAAAAGAACAATAATAAATTCACTTATCTTTTGGCTATCTTT
ACAACAGAGTCCCACGGGATATATAGTCGTAACCTTTTAATAATGTCGAG
GTCGAGCTTTACAGAGAAAATCCGTGAGTAGTTGTTTAGAAATGTTGAGT
TTTTATCTGACGCAATATACCACTAAATCTCAAGATACaaaatgaaaagg
tattttgGAAGAACACGTGCTTTCTACAGGAAAATAGTACAAGCCAAAAC
TCTCATCCTTAAAAGGCAATCTTTTCGTTACAGGCGGTCACGATTTAAAC
CATCCATCTGGTAGCGAACAAACTCGAAATGTGAAACGCCTTATTATGCA
TCCTTCATACGGACGCTTGAACAATGATATTGCATTGATCGAACTCGACC
GTCCAGTAATGTTCACTGATCGTATACAGCCTGTGTGTTTGCCAGAGCCT
ACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTGACTGGTAAGAATCT
CTTTCCATCAAACCTTTCGTCAAAGATTATAACATCCCTGTCTAGCTAAC
ATGCCGgaaaatttgttaatttttctaatttaaggcatggcaataaataa
ttattttggaagCTACGCGTGAAAAAATAGAGAAGAATTTAGTTACGATT
CAGGCATGTAAAATACGCGTTAATGATTAAGGAAATTCAAGTCTAAAATT
TAAATCTAAGTTTTAATGTCAAAAGCTTGATATGCGCTATAATTTAATAA
TGCAAAACTTAGCCCACGTCTTAATATAGTAAGATTAATTGGGTTTTTTT
GGAAGAGTAcgctttaaattaaaaaaagttacaatatCTTGTATGATTTA
tctatttttaaggttttgtattgctttatgtttttatttctgTTCTGTCA
CGCTTTTTTCACATAAAATTGAGGAATGATAGAatttgttggacctacct
ggaggtcctataaattaacctttgtccgtctgttaccctgcttttctcga
gattggctcattaattTGTTCCgcatttttgcataaagatgtgtattagc
actgcccaaaaaaaaaaatccaggccaaaaatgccggaaatatgccggga
aaaccggctttttggcattttctagagatttcatcatttgtttttttctg
aattttcgaACTAAGATGTAAATCagcaatgcctaaaatatgacctagtc
cgattttcgatggaaatttttttctggccgaaaatgacagaaatatgccg
gaaatcaccgtttttgcagatttcatTGGATCTTTATaattcatattttt
gtttttcaaaaaaaagcatTATAATAAAATGCCCACGATTCAgtatggtt
caattttcaatgaaactgattttggtagcCGGAACAGCCGAAGATCACTA
GGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTTTCCATCATCGC
TTTAAACTACAGTCGACTTTCCATAACTTGAACCTCCTCAACTCAATTAT
CTCCATAAACTCGAAAGATTTTTTCGGTCTCTTGAGAAGATTCTTAGACT
ATTCTGCCTCTCTATATCTCGAATTTCCATAACTGGAACAATTACTGATT
ATCCCCTGGGCGTTCCAGCACTCGACTATATTACACTTCCCTACTTTAtt
ttatttcgtattttcaacactttctctccttgagNNNNNNNNNNNNNNNN
NNccaaaaatgctggaaatatgccgggaaaaccggctttttggcattttc
tagagatttcatcatttgtttttttctgaattttcgaACTAAGATGTAAA
TCagcaatgcctaaaatatgacctagtccgattttcgatggaaatttttt
tctggccgaaaatgacagaaatatgccggaaatcaccgtttttgcagatt
tcatTGGATCTTTATaattcatatttttgtttttcaaaaaaaagcatTAT
AATAAAATGCCCACGATTCAgtatggttcaattttcaatgaaactgattt
tggtagcCGGAACAGCCGAAGATCACTAGGAAACCGTTCGCTCGTCCGTT
CTTTTTTCACGATCTTTTCCATCATCGCTTTAAACTACAGTCGGCTTCCC
ATAACTTGAACCTCCTCAACTCAATTATCTCCATAAACTCGAAAGATTTT
TTCGGTCTCTTGAGAAGATTCTTAGACTATTCTGCCTCTCTATATCTCGA
ATTTCCATAACTGGAACAATTACTGATTATCCCCTGGGCGTTCCAGCACT
CGACTATATTACACTTCCCTACTTTAttttatttcgtattttcaacactt
tctctccttgaggtcagatctctgatcttcaccatatatattcATCAGGT
TTGTCCAATCAGCGTTCcggcttgttttttttttttggtttagtCGATTG
ATTGTAcattattttatagatttttttttctggttttGACAAGTTTTTGG
TTTGTtgggtttgaaaatttacacacGTGTATGAAACACTCAAAAGGAAA
ACTCGTTGTTATCGAAACAATTTTTTACCTACTATGGTCAGAGCCATTTT
ACAGAATGAGTCgtcttattttttgaataaatacatATTCTTGATCTAAA
CTGATAAATAATTTTCAGGGTTAACGAGAAGGAGAGATGACTGAGTGGTC
TGTGGTATCAGACCTCAACCATTTTACCGAAATATCATGGTTATTTGAAA
AGAGAATTTGATAGATTCAGCATCGccttttataaagtttttaaaatagt
TGTATCTATTTCGAGTAGAACTTTCTTGGAGTGTTATTGTTTGAGATGCC
TTGTAAACTTTTTATAAGcttttgaggctgaaatttgtaAAAAGATCTTG
AGAAATTATgtactgaaaatgaaatcaatGAGACAGGGGGGTATACAACg
aatagaaattgaaaataatctaaggctgaaaattaaattttgctaaGTAT
GACGAGCCTCAGTTTTAATTTCCCGTATGCTTCTAAACCTTGTGGCTTGT
TTCTATGGCGGTGGTTAAGCAGAAAATGGCACTCTCATCGgaggtttttt
attttttggcgagCCTTCTTCATAAGTTTTCATCTAGGAGAAAATGCAAA
CGAGAGAAATTTTGAACTATGAAAATTCATTGGAAGCAGTCCCAAGCCat
ggtttttcaaaatttattttttgatagcAGCACCTGAAAAGTCTTCAAGT
AGTGCCCATTCTCCGAGGGAACTGCTGCGGAGGACACTGACCACTCCCAT
TACACCTTCACAAAACCATGACAAAATGTTTTAACTTTATAAAAGATTTA
AACAAGACTAGTAATGATGCTGATAAGActcattcatttttatttaacaa
CAGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATCCAATCCTTCAA
CAAGTTGGCTTAACTATACAAGAAAATTCTCAATGTAACAGATTGAACTC
AAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAACCCAGGCA
CACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGTCTGTCAA
CAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTCACC
AACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCGTTT
TCCGTAATTGGTTGAACTGCTATATCAACAACTAGATTTGTTAAATTAAC
GANGAATGCAAACGAGAGAAATTTTGAACTATGAAAATTCATTAGAAGCA
GTCCCAAGCCatggtttttcaaaatttattttttaatagcAGCACCTGAA
AAGTCTTCAAGTAGTGCCCATTCTCCGAAGGAACTGCTGCGGAGGACACT
GACCACTCCCATTACACCTTCACAAAACCATGACAAAATGTTATAAGTTT
ATAAGAGCTTTAAACAAGACTAGTAATGATGCTGATAAGActcattcatt
tttatttaacaaCAGGTTGGGGAAAGATTCAACATCCAGGAAGCTCACAT
CCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTAA
CAGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGG
CCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCA
CTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAG
TTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTC
GTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGATT
GGTTAAATTAAcgattatattatttttttagcaaagtTTTCTTTCTCAAC
GAACAAAGATCGCAAAATTAGAACATAAAAGACAGAGATAATACATCAAA
TTATATCCACTTAAG

Coding sequence (CDS) from alignment at sc0000039:635782..642446+

>TCONS_00004057 ID=TCONS_00004057|Name=TCONS_00004057|organism=Clytia hemisphaerica|type=CDS|length=8688bp|location=Sequence derived from alignment at sc0000039:635782..642446+ (Clytia hemisphaerica)
ATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTTTGCTGGAGCATG
CTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAATGCTCGA
CGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACGTGCGGT
GGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCTCTCCTCAAATTG
TTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGACAAAGATGCC
CAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGGTAGTGGCGGT
GTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTCAGGTGCACAATG
CGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTGGAGAGAACGCAA
AAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATGAAAGATGGGCGT
TTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGTGGTCACTGCATC
TCATTGCATCGATAAACAACAAGCTTCCAATATCCAAATCGTCTTAGGCG
GTCACGATTTAAACCATCCATCTGGTAGCGAACAAACTCGAAATGTGAAA
CGCCTTATTATGCATCCTTCATACGGACGCTTGAACAATGATATTGCATT
GATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTATACAGCCTGTGT
GTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTG
ACTGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATCCAATCCTTCA
ACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTAACAGATTGAACT
CAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAACCCAGGC
ACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGTCTGTCA
ACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTCAC
CAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCGTT
TTCCGTAATTGGTTGAACTGCTATATCAACAACTAGATGAAGTTATTAGT
TGTATTCGCTGCTCTTATTGCTTTTGCTGGAGCATGCTCTGACAAGAGTT
CATATTGTCGGTTCTTCCCCCGTGCACAATGCTCGACGAATGCTATTGTT
CGTATGCAATGTCCAAAATACTGTGGAACGTGCGGTGGCAGTGGAAGTGG
TAGCAGCGGCTCATGTCGAGATCTCTCCTCAAATTGTTACATGTTCCACT
CTCAGTGTAGCAACTCTTACGTCAGACAAAGATGCCCAAAGACCTGCAAC
GCCTGCAGTGGTGGCGGAAGTGGCGGTAGTGGCGGTGTTCCAAGTTGCGC
TGGCAAAGGCACTGGGTTACCCTCAGGTGCACAATGCGGTCAAGTCAAAG
TCAGTTCATCAAGAGTCATTGCTGGAGAGAACGCAAAAGCTGGAGCATGG
CCATGGCAAATTGCCATGACAATGAAAGATGGGCGTTTTTTCTGTGGAGG
ATCTTTGGTCAACGCCAAATGGGTGGTCACTGCATCTCATTGCATCGATA
AACAACAAGCTTCCAATATCCAAATCGTCTTAGGCGGTCACGATTTAAAC
CATCCATCTGGTAGCGAACAAACTCGAAATGTGAAACGCCTTATTATGCA
TCCTTCATACGGACGCTTGAACAATGATATTGCATTGATCGAACTCGACC
GTCCAGTAATGTTCACTGATCGTATACAGCCTGTGTGTTTGCCAGAGCCT
ACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTGACTGGCTGGGGAAA
GATTCAACATCCTGGAAGCTCACATCCAATCCTTCAACAAGTTGGCCTAA
CTATACAAGAAAATTCTCAATGTAACAGATTGAACTCAAAATACGTCCCC
ATCTCACAACAAATGGTATGCGCGGCCAACCCAGGCACACGACAAATGGG
TTGTCATGGTGACAGCGGTGGCCCACTTGTCTGTCAACAGCCAGATGGTA
GCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTCACCAACATGTACGGCT
AGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCGTTTTCCGTAATTGGTT
GAACTGCTATATCAACAACTAGATGAAGTTATTAGTTGTATTCGCTGCTC
TTATTGCTTTTGCTGGAGCATGCTCTGACAAGAGTTCATATTGTCGGTTC
TTCCCCCGTGCACAATGCTCGACGAATGCTATTGTTCGTATGCAATGTCC
AAAATACTGTGGAACGTGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCAT
GTCGAGATCTCTCCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAAC
TCTTACGTCAGACAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGG
CGGAAGTGGCGGTAGTGGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTG
GGTTACCCTCAGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGA
GTCATTGCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGC
CATGACAATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACG
CCAAATGGGTGGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCC
AATATCCAAATCGTCTTAGGCGGTCACGATTTAAACCATCCATCTGGTAG
CGAACAAACTCGAAATGTGAAACGCCTTATTATGCATCCTTCATACGGAC
GCTTGAACAATGATATTGCATTGATCGAACTCGACCGTCCAGTAATGTTC
ACTGATCGTATACAGCCTGTGTGTTTGCCAGAGCCTACAGAACAACCAGC
TGTGGGAAGCAAATGCTACTTGACTGGCTGGGGAAAGATTCAACATCCTG
GAAGCTCACATCCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAAT
TCTCAATGTAACAGATTGAACTCAAAATACGTCCCCATCTCACAACAAAT
GGTATGCGCGGCCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACA
GCGGTGGCCCACTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCAT
GGGGCTGTCAGTTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGAC
TGTTTTTGCTCGTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCA
ACAACTAGATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTTTGCT
GGAGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACA
ATGCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAA
CGTGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCTCTCC
TCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGACA
AAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGGTA
GTGGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTCAGGT
GCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTGGAGA
GAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATGAAAG
ATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGTGGTC
ACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAATATCCAAATCGT
CTTAGGCGGTCACGATTTAAACCATCCATCTGGTAGCGAACAAACTCGAA
ATGTGAAACGCCTTATTATGCATCCTTCATACGGACGCTTGAACAATGAT
ATTGCATTGATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTATACA
GCCTGTGTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGCAAAT
GCTACTTGACTGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATCCA
ATCCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTAACAG
ATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCA
ACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTT
GTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTG
GGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTG
TCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGATGAAG
TTATTAGTTGTATTCGCTGCTCTTATTGCTTTTGCTGGAGCATGCTCTGA
CAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAATGCTCGACGAATG
CTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACGTGCGGTGGCAGT
GGAAGTGGTAGCAGCGGCTCATGTCGAGATCTCTCCTCAAATTGTTACAT
GTTCCACTCTCAGTGTAGCAACTCTTACGTCAGACAAAGATGCCCAAAGA
CCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGGTAGTGGCGGTGTTCCA
AGTTGCGCTGGCAAAGGCACTGGGTTACCCTCAGGTGCACAATGCGGTCA
AGTCAAAGTCAGTTCATCAAGAGTCATTGCTGGAGAGAACGCAAAAGCTG
GAGCATGGCCATGGCAAATTGCCATGACAATGAAAGATGGGCGTTTTTTC
TGTGGAGGATCTTTGGTCAACGCCAAATGGGTGGTCACTGCATCTCATTG
CATCGATAAACAACAAGCTTCCAATATCCAAATCGTCTTAGGCGGTCACG
ATTTAAACCATCCATCTGGTAGCGAACAAACTCGAAATGTGAAACGCCTT
ATTATGCATCCTTCATACGGACGCTTGAACAATGATATTGCATTGATCGA
ACTCGACCGTCCAGTAATGTTCACTGATCGTATACAGCCTGTGTGTTTGC
CAGAGCCTACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTGACTGGC
TGGGGAAAGATTCAACATCCTGGAAGCTCACATCCAATCCTTCAACAAGT
TGGCCTAACTATACAAGAAAATTCTCAATGTAACAGATTGAACTCAAAAT
ACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAACCCAGGCACACGA
CAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGTCTGTCAACAGCC
AGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTCACCAACAT
GTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCGTTTTCCGT
AATTGGTTGAACTGCTATATCAACAACTAGATGAAGTTATTAGTTGTATT
CGCTGCTCTTATTGCTTTTGCTGGAGCATGCTCTGACAAGAGTTCATATT
GTCGGTTCTTCCCCCGTGCACAATGCTCGACGAATGCTATTGTTCGTATG
CAATGTCCAAAATACTGTGGAACGTGCGGTGGCAGTGGAAGTGGTAGCAG
CGGCTCATGTCGAGATCTCTCCTCAAATTGTTACATGTTCCACTCTCAGT
GTAGCAACTCTTACGTCAGACAAAGATGCCCAAAGACCTGCAACGCCTGC
AGTGGTGGCGGAAGTGGCGGTAGTGGCGGTGTTCCAAGTTGCGCTGGCAA
AGGCACTGGGTTACCCTCAGGTGCACAATGCGGTCAAGTCAAAGTCAGTT
CATCAAGAGTCATTGCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATGG
CAAATTGCCATGACAATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTTT
GGTCAACGCCAAATGGGTGGTCACTGCATCTCATTGCATCGATAAACAAC
AAGCTTCCAATATCCAAATCGTCTTAGGCGGTCACGATTTAAACCATCCA
TCTGGTAGCGAACAAACTCGAAATGTGAAACGCCTTATTATGCATCCTTC
ATACGGACGCTTGAACAATGATATTGCATTGATCGAACTCGACCGTCCAG
TAATGTTCACTGATCGTATACAGCCTGTGTGTTTGCCAGAGCCTACAGAA
CAACCAGCTGTGGGAAGCAAATGCTACTTGACTGGCTGGGGAAAGATTCA
ACATCCTGGAAGCTCACATCCAATCCTTCAACAAGTTGGCCTAACTATAC
AAGAAAATTCTCAATGTAACAGATTGAACTCAAAATACGTCCCCATCTCA
CAACAAATGGTATGCGCGGCCAACCCAGGCACACGACAAATGGGTTGTCA
TGGTGACAGCGGTGGCCCACTTGTCTGTCAACAGCCAGATGGTAGCTTCA
AACTTCATGGGGCTGTCAGTTGGGGCTCACCAACATGTACGGCTAGTGAC
GCTTGGACTGTTTTTGCTCGTGTCTCCGTTTTCCGTAATTGGTTGAACTG
CTATATCAACAACTAGATGAAGTTATTAGTTGTATTCGCTGCTCTTATTG
CTTTTGCTGGAGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCC
CGTGCACAATGCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATA
CTGTGGAACGTGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAG
ATCTCTCCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTAC
GTCAGACAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAG
TGGCGGTAGTGGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTAC
CCTCAGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATT
GCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCATGAC
AATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAAT
GGGTGGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAATATC
CAAATCGTCTTAGGCGGTCACGATTTAAACCATCCATCTGGTAGCGAACA
AACTCGAAATGTGAAACGCCTTATTATGCATCCTTCATACGGACGCTTGA
ACAATGATATTGCATTGATCGAACTCGACCGTCCAGTAATGTTCACTGAT
CGTATACAGCCTGTGTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGG
AAGCAAATGCTACTTGACTGGCTGGGGAAAGATTCAACATCCTGGAAGCT
CACATCCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAA
TGTAACAGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATG
CGCGGCCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTG
GCCCACTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCT
GTCAGTTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTT
TGCTCGTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACT
AGATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTTTGCTGGAGCA
TGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAATGCTC
GACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACGTGCG
GTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCTCTCCTCAAAT
TGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGACAAAGATG
CCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGGTAGTGGCG
GTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTCAGGTGCACAA
TGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTGGAGAGAACGC
AAAAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATGAAAGATGGGC
GTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGTGGTCACTGCA
TCTCATTGCATCGATAAACAACAAGCTTCCAATATCCAAATCGTCTTAGG
CGGTCACGATTTAAACCATCCATCTGGTAGCGAACAAACTCGAAATGTGA
AACGCCTTATTATGCATCCTTCATACGGACGCTTGAACAATGATATTGCA
TTGATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTATACAGCCTGT
GTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGCAAATGCTACT
TGACTGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATCCAATCCTT
CAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTAACAGATTGAA
CTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAACCCAG
GCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGTCTGT
CAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTC
ACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCG
TTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002272XLOC_002272Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004057-proteinTCONS_00004057-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004057-exon-sc0000039-1491911889:635782..635939TCONS_00004057-exon-sc0000039-1491911889:635782..635939Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:635782..635939TCONS_00004057-exon-sc0000039-1510915933:635782..635939Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:635782..635939TCONS_00004057-exon-sc0000039-1575043694:635782..635939Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:636423..636551TCONS_00004057-exon-sc0000039-1491911889:636423..636551Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:636423..636551TCONS_00004057-exon-sc0000039-1510915933:636423..636551Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:636423..636551TCONS_00004057-exon-sc0000039-1575043694:636423..636551Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:636867..636998TCONS_00004057-exon-sc0000039-1491911889:636867..636998Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:636867..636998TCONS_00004057-exon-sc0000039-1510915933:636867..636998Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:636867..636998TCONS_00004057-exon-sc0000039-1575043694:636867..636998Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:637459..637491TCONS_00004057-exon-sc0000039-1491911889:637459..637491Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:637459..637491TCONS_00004057-exon-sc0000039-1510915933:637459..637491Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:637459..637491TCONS_00004057-exon-sc0000039-1575043694:637459..637491Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:637742..637948TCONS_00004057-exon-sc0000039-1491911889:637742..637948Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:637742..637948TCONS_00004057-exon-sc0000039-1510915933:637742..637948Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:637742..637948TCONS_00004057-exon-sc0000039-1575043694:637742..637948Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:638315..638521TCONS_00004057-exon-sc0000039-1491911889:638315..638521Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:638315..638521TCONS_00004057-exon-sc0000039-1510915933:638315..638521Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:638315..638521TCONS_00004057-exon-sc0000039-1575043694:638315..638521Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:641385..641417TCONS_00004057-exon-sc0000039-1491911889:641385..641417Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:641385..641417TCONS_00004057-exon-sc0000039-1510915933:641385..641417Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:641385..641417TCONS_00004057-exon-sc0000039-1575043694:641385..641417Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1491911889:642030..642446TCONS_00004057-exon-sc0000039-1491911889:642030..642446Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1510915933:642030..642446TCONS_00004057-exon-sc0000039-1510915933:642030..642446Clytia hemisphaericaexon
TCONS_00004057-exon-sc0000039-1575043694:642030..642446TCONS_00004057-exon-sc0000039-1575043694:642030..642446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:635782..642446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.805007	0.641055	1.01324	0.29774	0	0	0	0.418643	0	0.237382	0.260101	0	7.7989	12.4492	0.135361	0.0208407	13.5107	12.3131	80.3614	62.255	49.7803	57.5238	72.2548	91.9739	66.3601	97.0302	2.24719e-08	1.2985	0	0.899357
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR003582ShKT_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00004057 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.888e-46
Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 2 
Query:  482 SSRVIAGENAKAGAWPWQIAMTMKDGRFFCGGSLVNAKWVVTASHCIDKQQASNIQIVLGGHDLNHPSGSEQTRNVKRLIMHPSYGR--LNNDIALIELDRPVMFTDRIQPVCLPEPTEQPAVGSKCYLTGWGKIQHPGSSHPI-LQQVGLTIQENSQCNRLNSKYVPISQQMVCAANPGTRQMGCHGDSGGPLVCQQPDGSFKLHGAVSWGSPTCTASDAWTVFARVSVFRNWL 1177
            S R++ GENA  G+WPWQ+++    G  FCGGSL++  WVVTA+HC          +VLG +D +  +   Q  +V R I HPS+    +NND+ L++L  P  +T RI PVCL    E    G  C  TGWG++   G+  P  LQQV L +   +QC +       I+  M+CA   G     C GDSGGPLVCQ+ + ++ L G VSWG+  C    A  V+ RVS F  W+
Sbjct:   31 SQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWGS--SITDSMICAGGAGASS--CQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNV-RAPAVYTRVSKFSTWI 257
The following BLAST results are available for this feature:
BLAST of TCONS_00004057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL1.888e-4640.43Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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