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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004137 ID=TCONS_00004137|Name=TCONS_00004137|organism=Clytia hemisphaerica|type=transcript|length=3742bp
CCTAAGTATTTGCATCTTCGAACTATATCATCAACAAGCTGTCTCAAATC
ATCAGAATGCAAAATGACAGGTTTGGCCATCTTGCACTGGATGCTATATC
TAAACAGAAGCGTTTCCATTTCATGATCACCACCACTTATATCAAGCTGA
ATATAAGTTTCTTTGGCGTTTTCAAAATCACTCTTCATCTGTTCATGTTT
TTCGTATAAACAAGCTTGGATTTGATGTTCTCTACTGGAGATGTGTTCTC
GTGTTTTACCACCTTGGACATTACAAACGATACAGGTGTCATTCCGATCA
AAGTGTTCCTCAATGAAAGCCTCGACAGCTACTTCTTCTCGTCTCATCTT
CAGCATGAGTCGTTTGTGATGCCACTTTAGAAACCAATGGTGAATCATGA
GGCCAGCCCAATACTCGGTCATCTTCTGCAAAGCTGACTTTcgtttttct
cttctcttttgaaCAAATGCTCGCCATTTGTCACAGATATCACGACTGAT
CATTCGCTGTCTGGCTTCTTCTTCTTTCTGACGTACTCGTAATGAGACTT
GCTGAGTGTTGTCTTCTGTTTCTTCATCGCTGGCGTCTCCTGTTTTGAAA
TAATCGTCTTCTGGGTCAAAGACTTCTTCTTCGTTTCCTTGAAGAGgtaa
ttcttcaattttctctGGGTCAGCCTGTTTGGATGGTTCTGTTGATTTAA
CTTCTTCACCTCTCTTCATAATACGAAAAGTTGTTTGTTGGGCAGGTTGC
TTCTGATTGGCTGACGGTGCAAGAAGTGCACCAGGCATGATCAACCTCTG
TTTTGTACTATCCCACCAACACATTTGCAGCATGTCATTTCGATCCTTCA
ACAATTCTAAGAGTAGATTTTTCGCTTGTTGAAAATGGAGCACGCCACCA
ATTTGCTTGAAAATCTTGGATTGAGTTGTCTGCTGCTTGACATTAAGAAA
CTTTCGAAACAAGTAAACGATATCTTTACCGAAACCATCAATTCCTTGTT
GTAGGTTGGCCAGCACGACAAGATATAAGCATAACAAACGTGAGATCTTC
AACATACTTTCATTGCTTTGCCTGTCTTCGAATAGAGAGAGCAAAGTTTT
GAATATGCCATCAGGATTAGTCAGCATCTCACAAAATTGCTTGATAAAAG
ATACAATTTTGTCccattcttcttttttctttcgtAGGTTTGCCACAGCT
AAGGAGGCTTTGTGGTTGTAAATGAAATCCCATTCTTCCATTTGCACAGC
GTATGAGCGTGGAACACAAAAAGAAAATGGGCGACCAGGTGGTTGAGTAG
CAGAAAAACTGGCGAAAAGTAGAATGATTGGAACTTCCAGCATATCACAG
AAGGTATCCACATTAGCATTGCttttcctcaaaactttaagAGTCGAGTA
AAAGAAATTCTTGACATGAGAATCATAATACAAGGTTTCAAGGCCTTGGT
TGTGGACTTTGAACACCTCTTGAATGGGCAGCCGGTCCATCCGTCGGTCG
AGACGTAACTCATCGATCAGGGGGTTGTTGGGGTCCATGAGGTAGGAGAT
GTGGTTTAATCCGATGTAGAGGTTGATATCAACTTTTCGGTCATTGAGCC
TTTCACTCCATTCGTGACGCATGATCCCCTCCAAGCTTTTCTTTGCTACG
TGTGGAATGGTAGCCATTTGCTCACTGATTTGCGTCTTGATAATGTGATA
AAACGGTTTGTAACATTGAAGTAGTCTGTAAAGCATCCAGAGTTCTTCTG
GACGTTTCGGTTGCATCCATTTAGAGTGAGGCTCAGTCATTTCTGAAGAC
AATTGCCGATAAGTGGTAGAGCAAACTCCACTGACAGAGAGGCTTCCCAG
TAAAGCTCTCAGTGCACGAACGAATGAGTCTGATGTAGGAGGTTCATGGA
GACTGCGGCAATGTCGATCGGAACAGTGGTTGGGCACTTGACATATCATA
TTGGTGTTAACTTCTTGGGTGACAAGTTGGCGAAAGTTGAAAATAACTGC
TTTGAAGATAGACAGAAGAATCTTTGCTGCAATTTCCATTGCTTTCACCT
TGGTGATTTTTCCAGATGGTAAGGATGAAGGCATACTGCCAAGCTTGTAG
TAATACTTCAAGGAAGACTGTTCGAACACCAGATAATCTCGACCACTCCT
ACCAAATCCGATCTTTTCCAAGGTTTCGTTGACAAAAGTCTTGTCTGTGC
AAGCATTAGCTAGATTGGCGACCAAATCAAAGATGGATTGAACCAAACCA
TAGAACTTTTTATAAGATTCATACATGTTCTTGAAGACACCATTCCTGTT
GACTTTATCGAAGGTAATCAGCAATTTGAAAACCACTAACTGCCCGACGG
GGTCTTTCTCAAACCCTTTGATCGCATCAAAAAGGTATTTGGCTTCTTTG
GTTAGAAAGGCGTAGCAGTAATAAGCTTCAGCTTTGAGTGAGAGACTCGT
GACATCATTGATCAGGCTAAAAACTGATGCAAAGAGTTCGATCAATTCTT
CCTTTGCAACATCCAACGGTTTCAAAGTGTACTCTTTGAAAGCTAAGATA
AGATAACTTAACTTCTCATCAATGTTAACAGCAATTTTGGCAGCTTCAAC
ATAGTTGTGTTGATCTTTGTACAATCTGGCTAATTGCTGCATCATTTTGT
GCTCTTGGTAAAGCTGCACCAAATCATCTAACATATCATCTCTGGATCGG
AGATACGAGATTTGGAAATTCAGTGTTCCAAACTTCAAGATTTGACGAAT
GGTTTGAATATTGTTGGAATCTTCGTAGAACCTCAATGCTTTTGCCATCA
ATTCAGAACTGTCAACTTCGTTCAAGGAGTGTTGTTGTTGGTATTCCAAC
GCTTCGATGAATTTGTTTTCAGACTTGAGGAGAGACATGACTGAACGATG
GTTGTTGTCTGCTTTGTAACATCGGATGGCATCTTCTTTCTTCCCTGCTT
TCTTGTACAGTCTAGCTGCATCTCCGAACTGGAAAAAAAGTACGATAGTA
TACTACAATATTAAAGACTCGCTGTATAACTTAGTACTAAACAGCAGCAG
TTAATAAGATAAAATCTAGTTGAAATCGTAGGGAAACAAAAGCATAAACC
TAGAAAAAATACCTTGGATTGTTTTTCGTAGAGCAAAGCGAGAAAATCGT
TAGCATGTGCATTTTGTAATGACGTCACGGCATCTCCCACCAGACCACAT
TTCAAGAATGACAAAGCACAGATTTTGAAACCGTTCAAGATGGTTGTTTT
GGCGATTTTCCCTTTCTTCGAATCCCAACCATCTTTAGCCTTACGGTAAG
CTAATTCGAATTTCAATTTGGCTTGACACTTCTCTCTCAATTGGTCATTA
TCAGCTTTTATAGCACACTTCATGGCAAGTTTCCAGAGGCCTTTGGTGAA
GAAATATTTGCCTTGTTTATCCCATTGTTCCTCAGAAGACTGCTCAGCGA
AATGGTGATCACGAACAGCTCCATCTTCAAGTTTGGCAACATCCACCAAC
TTTTTCTTAACTAGGAAATCAAACATAGGTGCTCTTTTCTTCTTATCTTC
GTCAAAGATCCAAACATTAACACGAGCTCTGGTGACAGCAGTGTATAACT
TCTTGAGCTCGGAATTCAATAGCTTGTGTTTGTTGTAGTCAAAGTCCAGT
GGACGTGATGAGTAATCAACATCGTTCGGAATGACTTGTAAACTTGAATC
ACTTTCAGTGACATCTACTTCGATTTCGTTGGATTTGGATGC Run BLAST on NCBI transcript from alignment at sc0000039:572300..578366- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004137 ID=TCONS_00004137|Name=TCONS_00004137|organism=Clytia hemisphaerica|type=transcript|length=6067bp|location=Sequence derived from alignment at sc0000039:572300..578366- (Clytia hemisphaerica)
CCTAAGTATTTGCATCTTCGAACTATATCATCAACAAGCTGTCTCAAATC
ATCAGAATGCAAAATGACAGGTTTGGCCATCTTGCACTGGATGCTATATC
TAAACAGAAGCGTTTCCATTTCATGATCACCACCACTTATATCAAGCTGA
ATATAAGTTTCTTTGGCGTTTTCAAAATCACTCTTCATCTGTTCATGTTT
TTCGTATAAACAAGCTTGGATTTGATGTTCTCTACTGGAGATGTGTTCTC
GTGTTTTACCACCTTGGACATTACAAACGATACAGGTGTCATTACGATCA
AAGTGTTCCTCAATGAAAGCCTCGACAGCTACTTCTTCTCGTCTCATCTT
CAGCATGAGTCGTTTGTGATGCCACTTTAGAAACCAATGGTGAATCATGA
GGCCAGCCCAATACTTGGTCATCTTCTGCAAAGCTGACTTTCGTTTTTCT
CTTCTCTTTTGAACAAATGCTCGCCATTTGTCACAGATATCACGACTGAT
CATTCGCTGTCTGGCTTCTTCTTCTTTCTGACGTACTCGTAATGAGACTT
GCTGAGTGTTGTCTTCTGTTTCTTCATCGCTGGCGTCTCCTGTTTTGAAA
TAATCGTCTTCTGGGTCAAAGACTTCTTCTTCGTTTCCTTGAAGAGGTAA
TTCTTCAATTTTCTCTGGGTCAGCCTGTTTGGATGGTTCTGTTGATTTAA
CTTCTTCACCTCTCTTCATAATGCGAAAAGTTGTTTGTTGGGCAGGTTGC
TTCTGATTGGCTGACGGTGCAAGAAGTGCACCAGGCATGATCAACCTCAG
TTTTGTACTATCCCACCAACACANGTTGCTTCTGATTGGCTGACGGTGCA
AGAAGTGCACCAGGCATGATCAACCTCTGTTTTGTACTATCCCACCAACA
CATTTGCAGCATGTCATTTCGATCCTTCAACAATTCTAAGAGTAGATTTT
TCGCTTGTTGAAAATGGAGCACGCCACCAATTTGCTTGAAAATCTTGGAT
TGAGTTGTCTGCTGCTTGACATTAAGAAACTTTCGAAACAAGTAAACGAT
ATCTTTACCGAAACCATCAATTCCTTGTTGTAGGTTGGCCAGCACGACAA
GATATAAGCATAACAAACGTGAGATCTTCAACATACTTTCATTGCTTTGC
CTGTCTTCGAATAGAGAGAGCAAAGTTTTGAATATGCCATCAGGATTAGT
CAGCATCTCACAAAATTGCTTGATAAAAGATACAATTTTGTCCCATTCTT
CTTTTTTCTTTCGTAGGTTTGNTAGTGTTAAAACGATCTAAACATCTAAT
CATTATTTACATAAAAACATTCACAATATACATATAATATATAATCAAGC
AATCCTTAAAATATCAGAATCATACAATGTTCTCATATAGAAATATCTTT
TCTTAAATACCAAATCTTTTTGAGTCTATACAATGCGGTAACCGATTACA
ACTCAAAGAACACAAAACTTATGATCAAAATCAAAACAAAAACCGTGAAT
GACTAAAAAGAACGAAATCAAAAAGTGTGATGTGGTGTGACCAAAATGGA
CAAAAAATCGACAAAAAAATCTTTAAAAACATATTAAAATAAAGACGAAA
AAAGATCTTAAAAAGCTAAAAAACATGAAAAGTAAAATTAAAAAACTGCT
GCAAATCAACACCATCTGAATATGATTAAAAAACCAATGGGGAAATTTGG
TTTCATCGCCAAAATCTACAGATTCTCAAAGAATCACCCAAAGCATCAAA
AACAATCAAATGTGAATGAGATGAGAATCACCATATCGTTCCAATTAAAA
AAAAACAAGAAAAAATTTGACCATCCATGCTTAATGATCGTTTAAAACGG
TACAGTAATCGGGGAAAACCAAGGATTAGCACAGTAATTTCTCCACCAAA
TATGCAAAATAACTGTTTATCATACCATACACCAAGTTCAACGTCGTTTG
TTTTGAGATTTGGAGGCTTTCAAATTCTTCTTCTTACGACTTTCAATGTT
GGTGAACTCGTTTTCTTCTTCGTGTAATTTTCGCTCTTCTTCCATTTCTG
AAATAAGGACGGTCATCAAAATTAACATTTTTTTAGACGGCCGGTATGAC
AGGACGACGGTAAATTAAAAATTTCTACTTAAGGATTAAAGAAGCAATTA
TTGACGTCAAAAGAAGGCATGACTTTAAAAAGTCAACATTTTGCAGACTC
TGGTTATAAGCGATAAATTCGGTCTTAGAGTAGAGGATATAGATAAAGCG
AGCTCTCGTTAGAATTTTAAAACAACGGTGAAACAAAACCAGGAAGCACT
GACATTGAAATTTAGTTCTCACTCACCTAAGTATTTGCATCTTCGAACTA
TATCATCAACAAGCTGTCTCAAATCATCAGAATGCAAAATGACAGGTTTG
GCCATCTTGCACTGGATGCTATATCTAAACAGAAGCGTTTCCATTTCATG
ATCACCACCACTTATATCAAGCTGAATATAAGTTTCTTTGGCGTTTTCAA
AATCACTCTTCATCTGTTCATGTTTTTCGTATAAACAAGCTTGGATTTGA
TGTTCTCTACTGGAGATGTGTTCTCGTGTTTTACCCCCTTGGACATTACA
AACGATACAGGTGTCATTCCGATCAAAGTGTTCCTCAATGAAAGCCTCGA
CAGCTACTTCTTCTCGTCTCATCTTCAGCATGAGTCGTTTGTGATGCCAC
TTTAGAAACCAATGGTGAATCATGAGGCCAGCCCAATACTCGGTCATCTT
CTGCAAAGCTGACTTTCGTTTTTCTCTTCTCTTTTGAACAAATGCTCGCC
ATTTGTCACAGATATCACGACTGATCATTCGCTGTCTGGCTTCTTCTTCT
TTCTGACGTACTCGTAATGAGACTTGCTGAGTGTTGTCTTCTGTTTCTTC
ATCGCTGGCGTCTCCTGTTTTGAAATAATCGTCTTCTGGGTCAAAGACTT
CTTCTTCGTTTCCTTGAAGAGGTAATTCTTCAATTTTCTCTGGGTCAGCC
TGTTTGGATGGTTCTGTTGATTTAACTTCTTCACCTCTCTTCATAATACG
AAAAGTTGTTTGTTGGGCAGGTTGCTTCTGATTGGCTGACGGTGCAAGAA
GTGCACCAGGCATGATCAACCTCTGTTTTGTACTATCCCACCAACACATT
TGCAGCATGTCATTTCGATCCTTCAACAATTCTAAGAGTAGATTTTTCGC
TTGTTGAAAATGGAGCACGCCACCAATTTGCTTGAAAATCTTGGATTGAG
TTGTCTGCTGCTTGACATTAAGAAACTTTCGAAACAAGTAAACGATATCT
TTACCGAAACCATCAATTCCTTGTTGTAGGTTGGCCAGCACGACAAGATA
TAAGCATAACAAACGTGAGATCTTCAACATACTTTCATTGCTTTGCCTGT
CTTCGAATAGAGAGAGCAAAGTTTTGAATATGCCATCAGGATTAGTCAGC
ATCTCACAAAATTGCTTGATAAAAGATACAATTTTGTCCCATTCTTCTTT
TTTCTTTCGTAGGTTTGCCACAGCTAAGGAGGCTTTGTGGTTGTAAATGA
AATCCCATTCTTCCATTTGCACAGCGTATGAGCGTGGAACACAAAAAGAA
AATGGGCGACCAGGTGGTTGAGTAGCAGAAAAACTGGCGAAAAGTAGAAT
GATTGGAACTTCCAGCATATCACAGAAGGTATCCACATTAGCATTGCTTT
TCCTCAAAACTTTAAGAGTCGAGTAAAAGAAATTCTTGACATGAGAATCA
TAATACAAGGTTTCAAGGCCTTGGTTGTGGACTTTGAACACCTCTTGAAT
GGGCAGCCGGTCCATCCGTCGGTCGAGACGTAACTCATCGATCAGGGGGT
TGTTGGGGTCCATGAGGTAGGAGATGTGGTTTAATCCGATGTAGAGGTTG
ATATCAACTTTTCGGTCATTGAGCCTTTCACTCCATTCGTGACGCATGAT
CCCCTCCAAGCTTTTCTTTGCTACGTGTGGAATGGTAGCCATTTGCTCAC
TGATTTGCGTCTTGATAATGTGATAAAACGGTTTGTAACATTGAAGTAGT
CTGTAAAGCATCCAGAGTTCTTCTGGACGTTTCGGTTGCATCCATTTAGA
GTGAGGCTCAGTCATTTCTGAAGACAATTGCCGATAAGTGGTAGAGCAAA
CTCCACTGACAGAGAGGCTTCCCAGTAAAGCTCTCAGTGCACGAACGAAT
GAGTCTGATGTAGGAGGTTCATGGAGACTGCGGCAATGTCGATCGGAACA
GTGGTTGGGCACTTGACATATCATATTGGTGTTAACTTCTTGGGTGACAA
GTTGGCGAAAGTTGAAAATAACTGCTTTGAAGATAGACAGAAGAATCTTT
GCTGCAATTTCCATTGCTTTCACCTTGGTGATTTTTCCAGATGGTAAGGA
TGAAGGCATACTGCCAAGCTTGTAGTAATACTTCAAGGAAGACTGTTCGA
ACACCAGATAATCTCGACCACTCCTACCAAATCCGATCTTTTCCAAGGTT
TCGTTGACAAAAGTCTTGTCTGTGCAAGCATTAGCTAGATTGGCGACCAA
ATCAAAGATGGATTGAACCAAACCATAGAACTTTTTATAAGATTCATACA
TGTTCTTGAAGACACCATTCCTGTTGACTTTATCGAAGGTAATCAGCAAT
TTGAAAACCACTAACTGCCCGACGGGGTCTTTCTCAAACCCTTTGATCGC
ATCAAAAAGGTATTTGGCTTCTTTGGTTAGAAAGGCGTAGCAGTAATAAG
CTTCAGCTTTGAGTGAGAGACTCGTGACATCATTGATCAGGCTAAAAACT
GATGCAAAGAGTTCGATCAATTCTTCCTTTGCAACATCCAACGGTTTCAA
AGTGTACTCTTTGAAAGCTAAGATAAGATAACTTAACTTCTCATCAATGT
TAACAGCAATTTTGGCAGCTTCAACATAGTTGTGTTGATCTTTGTACAAT
CTGGCTAATTGCTGCATCATTTTGTGCTCTTGGTAAAGCTGCACCAAATC
ATCTAACATATCATCTCTGGATCGGAGATACGAGATTTGGAAATTCAGTG
TTCCAAACTTCAAGATTTGACGAATGGTTTGAATATTGTTGGAATCTTCG
TAGAACCTCAATGCTTTTGCCATCAATTCAGAACTGTCAACTTCGTTCAA
GGAGTGTTGTTGTTGGTATTCCAACGCTTCGATGAATTTGTTTTCAGACT
TGAGGAGAGACATGACTGAACGATGGTTGTTGTCTGCTTTGTAACATCGG
ATGGCATCTTCTTTCTTCCCTGCTTTCTTGTACAGTCTAGCTGCATCTCC
GAACTGGAAAAAAAGTACGATAGTATACTACAATATTAAAGACTCGCTGT
ATAACTTAGTACTAAACAGCAGCAGTTAATAAGATAAAATCTAGTTGAAA
TCGTAGGGAAACAAAAGCATAAACCTAGAAAAAATACCTTGGATTGTTTT
TCGTAGAGCAAAGCGAGAAAATCGTTAGCATGTGCATTTTGTAATGACGT
CACGGCATCTCCCACCAGACCACATTTCAAGAATGACAAAGCACAGATTT
TGAAACCGTTCAAGATGGTTGTTTTGGCGATTTTCCCTTTCTTCGAATCC
CAACCATCTTTAGCCTTACGGTAAGCTAATTCGAATTTCAATTTGGCTTG
ACACTTCTCTCTCAATTGGTCATTATCAGCTTTTATAGCACACTTCATGG
CAAGTTTCCAGAGGCCTTTGGTGAAGAAATATTTGCCTTGTTTATCCCAT
TGTTCCTCAGAAGACTGCTCAGCGAAATGGTGATCACGAACAGCTCCATC
TTCAAGTTTGGCAACATCCACCAACTTTTTCTTAACTAGGAAATCAAACA
TAGGTGCTCTTTTCTTCTTATCTTCGTCAAAGATCCAAACATTAACACGA
GCTCTGGTGACAGCAGTGTATAACTTCTTGAGCTCGGAATTCAATAGCTT
GTGTTTGTTGTAGTCAAAGTCCAGTGGACGTGATGAGTAATCAACATCGT
TCGGAATGACTTGTAAACTTGAATCACTTTCAGTGACATCTACTTCGATT
TCGTTGGATTTGGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004137-exon-sc0000039-1575043694:578098..578366 | TCONS_00004137-exon-sc0000039-1575043694:578098..578366 | Clytia hemisphaerica | exon |
| TCONS_00004137-exon-sc0000039-1575043694:572300..575772 | TCONS_00004137-exon-sc0000039-1575043694:572300..575772 | Clytia hemisphaerica | exon |
| TCONS_00004137-exon-sc0000039-1510915933:578098..578366 | TCONS_00004137-exon-sc0000039-1510915933:578098..578366 | Clytia hemisphaerica | exon |
| TCONS_00004137-exon-sc0000039-1510915933:572300..575772 | TCONS_00004137-exon-sc0000039-1510915933:572300..575772 | Clytia hemisphaerica | exon |
| TCONS_00004137-exon-sc0000039-1491911889:578098..578366 | TCONS_00004137-exon-sc0000039-1491911889:578098..578366 | Clytia hemisphaerica | exon |
| TCONS_00004137-exon-sc0000039-1491911889:572300..575772 | TCONS_00004137-exon-sc0000039-1491911889:572300..575772 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:572300..578366 - |
Blast
BLAST of TCONS_00004137 vs. Swiss-Prot (Human)
Match: TRNK1 (TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 6.742e-17 Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = -1
Query: 3365 VDVTESDSSLQVIPNDVDYSS--RPLDFDYNKHKLLNSELKKLYTAVTRARVNVWIFDEDKKKRAPMFD-FXXXXXXXXXXXLEDGAVRDHHFAEQSSEEQWDKQGKYFFTKGLWKLAMKC 3718
D E + L +P D SS R L + +KLLN ELK+LYTA+TRARVN+WIFDE+++KRAP F F+ + + V E+ D F + S+ +W QG Y+ WK+A KC
Sbjct: 1601 TDSREENRPLVEVPLDKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKC 1721
The following BLAST results are available for this feature:
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