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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004148 ID=TCONS_00004148|Name=TCONS_00004148|organism=Clytia hemisphaerica|type=transcript|length=3757bpRun BLAST on NCBI protein sequence of TCONS_00004148-protein >TCONS_00004148-protein ID=TCONS_00004148-protein|Name=TCONS_00004148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp MEPKEESEKEETVEKMLEVHLTGCSKGLGMKIIGGLDPNGNYTGIFVKQIRun BLAST on NCBI transcript from alignment at sc0000039:685990..696755- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004148 ID=TCONS_00004148|Name=TCONS_00004148|organism=Clytia hemisphaerica|type=transcript|length=10766bp|location=Sequence derived from alignment at sc0000039:685990..696755- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:685990..696755- >TCONS_00004148 ID=TCONS_00004148|Name=TCONS_00004148|organism=Clytia hemisphaerica|type=CDS|length=39582bp|location=Sequence derived from alignment at sc0000039:685990..696755- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004148 vs. Swiss-Prot (Human)
Match: STXB4 (Syntaxin-binding protein 4 OS=Homo sapiens GN=STXBP4 PE=1 SV=2) HSP 1 Score: 202.986 bits (515), Expect = 6.258e-55 Identity = 164/582 (28.18%), Postives = 295/582 (50.69%), Query Frame = 2
Query: 641 NSHDVTHHDVINNDPV-KTVFILHETSLGISLGGGTDKQDGPNIFISDIVSGSDVFNEGSLRTGDVIMSINGESFVGLTNEQAKSSLSRMKLRKDLRSFQIAYVEKEQIHLIKEQITPRRNLPSTSTPQQAISTNEAFQSTPRKQNDSLLNELYDVMADIQESESDWNSQKMSPQELKNGEDDVFVKRKILFPPRFLSVPFLKNIPPQRTISHYLQQDVPSSQDEVARKKAKRPSETLSLEAHTTIKLEKLEGALQHLGLSPNQTQRKEIRKRLQSDADGSVTYGDFVRIAREVLHL-----NNGLKDRTQSLKNKSLTFQKSIMEEMDTTTTTKVDENENMISCNDEIXXXXXXXXXXXXXXXXYRDLLHEKDADCLQLEEDLXXXXXXXXXXRRECNTLRYESRKEI-EASQ---HQHEQQTEKTIERLEQENSGLRSNSLGTKD-----LKDLQKRLVVVGCQLRKTEISKRSYEVAVDKLTKFVEKVH----------LNLDSQQDXXXXXXX--------XXXXXELSSEAKETIRNVKMLLEEEPLPFGWEEVYSPEGTRYYMNHVTQTTSWVHPI 2287
N+ V ++ DP + + I ET LG+ + GG ++ +GP ++I +I+ G D + +G L+ GD ++S+N ES +G++ E+AKS ++ KLR + +++IA++ ++ + I P NL TS + + + P+ SL + +++ S N+ +S E+K G + + + +P I + + DV S+ E + E +SL K EKLE AL +LG+ P + Q + +R+++Q+D+ G+V++GDFV++AR + L N G + + L ++ L S +EM+ K + ++ + N ++ L E D QL E+LQ +Q+ E LR SR + EA+Q H E E+ I LE + + L++ D ++DL+KR++V+ CQLRK+E++++++E + +KL FVE + NL ++ +S+ + R+ L+ E+KE +++V+ LL+ + LP+GWEE Y+ +G +Y++NHVTQTTSW+HP+
Sbjct: 4 NTSTVVSPSLLEKDPAFQMITIAKETGLGLKVLGGINRNEGPLVYIQEIIPGGDCYKDGRLKPGDQLVSVNKESMIGVSFEEAKSIITGAKLRLE-SAWEIAFIRQK-----SDNIQP-ENLSCTSLIEA------SGEYGPQASTLSLFSSPPEILIPKTSSTPKTNNDILSSCEIKTGYN------------KTVQIP----ITSENSTVGLSNTDVASAWTENYGLQ-----EKISLNPSVRFKAEKLEMALNYLGIQPTKEQHQALRQQVQADSKGTVSFGDFVQVARNLFCLQLDEVNVGAHEISNILDSQLLPCDSSEADEME---RLKCERDDALKEVN------------------TLKEKLLESDKQRKQLTEELQNVKQEAKAVVEETRALR--SRIHLAEAAQRQAHGMEMDYEEVIRLLEAKITELKAQLADYSDQNKESVQDLKKRIMVLDCQLRKSEMARKTFEASTEKLLHFVEAIQEVFSDNSTPLSNLSERRAVLASQTSLTPLGRNGRSIPATLALESKELVKSVRALLDMDCLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 528 The following BLAST results are available for this feature:
BLAST of TCONS_00004148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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