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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004181 ID=TCONS_00004181|Name=TCONS_00004181|organism=Clytia hemisphaerica|type=transcript|length=1628bp
GTGAACtgttatcagatagaataatatctcactttggctacttcatcata
tattcagattccctttgttaaaagtgattattggtcgtaaaaacagtttc
tcaaaatctgatgcgtggatagaaatctctttataagggtatgtttgcat
ggtattttttctcagttacgaaatttttagttttgaaaaacGATTGATAT
TTACCAATCTATTTTAGCTTACAATCTGGAATTTTAGGAGCTGAAATTTA
GTGATTCCGTCGATTTTAactcctaaaattaaaaaatcaaatttagtcAA
TACGGAAAGAATAactaatttaggtgaaaacttTNTTGATTTGTTGCCAT
CTTCTGTCAGTTCGATGCTTTCGTGGTAGAGCTGTTGTAAATGCGGCGCA
ATACCTTTTGTTTTGAAGATCTCATTCTTAATATCGCGAATAGTGTTCAC
CTTGCCAGACAAAACATCGAATGAAAATTGTCCGGTCAAAAACTTAATGT
TTAACTCTTTTAAAAAGGTCAAGTGATGTTGTTCGCAAAACTTTTGCATA
TTCTTATCACGGTTTGCTTTGATTATTAGTGTTAAGACCAGCTTCTCGCG
GAGAGTGTCCTCCTCTACGAAAAAATCGTTTATGTTGCCTCCAAGCCAAT
TTATGTGTTTTTGatcatgtagaagatcaaaGAATTGCAGGGAAATACCT
TTGTATTTTTCAATCATGaggtttttcaatattttataaacttgaaaatt
tgattCCTGGCCATTTAACTGAGACAATGGAATTTCATGGAAAATAGTCG
AGTCATCTGGGTCTGGGTGCTTTATGATAATTGATCGCATTCGACTGAGA
CCTAACTGTTTCACCCTTTCTAATAATTCTGTTTCTGTATCATCAACCTG
GACTGCAAGCTTTATTGAAAGCGATGTTTGATTGTTAGTCAGATTTTGTT
CGTCTCGAATCTGCCCTGTCCCTGTCAGATTCGCCGTCCTACCCTTATTT
ACGATATTTTCGATATCGTTACTCGAAATTCTACGGCCATCCACAAAAAG
TCGCTgtttatttttaggaatttgtaACGAGTTCTCGATGAATACATCCA
ATTGATTCTCATCTCCCCTTCGATAATGATATTGTAAAACGTTAAACGCT
CCAAAGCTGGATACATTAACTGGAAACATTGTCTTTATCTCCAACTTACG
ATAAAGAGAGTTTAGATCTTCGTCACTTGTTGAATACACAGCTATTCTGA
CTTTCAATGGGCCCAACACATGATCGGCCACGTGTTTAGGGAACATTTCA
TTTTGCTCGATGATTTTGTCTCGATAAGTGACCTCCTGTTCTGCATAAGG
TATTTCAAATGCTGCTTCAACCCATGACTTTAAGACAGAAATACCAAGAT
ATCCGTTCTCTAATAATGGGTAATCTACTTCTAAATCGCTTTCTATGAAT
GGTATTAAAATCTTTACAGGACGTAAAAGATTATAAGTGTGCTCTGTTGC
TTCTGTTTGTCGCATAGTCAAATTTAACCCAAGCGATTCACCTTTATCCA
AACTGAGAAGTAAGTCACTGATCAATTGATCGTCAGCAAGAATCAATCTC
TGGTTTGTCTTTACTCCTAGTGACATAG Run BLAST on NCBI transcript from alignment at sc0000039:518248..519875 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004181 ID=TCONS_00004181|Name=TCONS_00004181|organism=Clytia hemisphaerica|type=transcript|length=1628bp|location=Sequence derived from alignment at sc0000039:518248..519875 (Clytia hemisphaerica)
CTATGTCACTAGGAGTAAAGACAAACCAGAGATTGATTCTTGCTGACGAT
CAATTGATCAGTGACTTACTTCTCAGTTTGGATAAAGGTGAATCGCTTGG
GTTAAATTTGACTATGCGACAAACAGAAGCAACAGAGCACACTTATAATC
TTTTACGTCCTGTAAAGATTTTAATACCATTCATAGAAAGCGATTTAGAA
GTAGATTACCCATTATTAGAGAACGGATATCTTGGTATTTCTGTCTTAAA
GTCATGGGTTGAAGCAGCATTTGAAATACCTTATGCAGAACAGGAGGTCA
CTTATCGAGACAAAATCATCGAGCAAAATGAAATGTTCCCTAAACACGTG
GCCGATCATGTGTTGGGCCCATTGAAAGTCAGAATAGCTGTGTATTCAAC
AAGTGACGAAGATCTAAACTCTCTTTATCGTAAGTTGGAGATAAAGACAA
TGTTTCCAGTTAATGTATCCAGCTTTGGAGCGTTTAACGTTTTACAATAT
CATTATCGAAGGGGAGATGAGAATCAATTGGATGTATTCATCGAGAACTC
GTtacaaattcctaaaaataaacAGCGACTTTTTGTGGATGGCCGTAGAA
TTTCGAGTAACGATATCGAAAATATCGTAAATAAGGGTAGGACGGCGAAT
CTGACAGGGACAGGGCAGATTCGAGACGAACAAAATCTGACTAACAATCA
AACATCGCTTTCAATAAAGCTTGCAGTCCAGGTTGATGATACAGAAACAG
AATTATTAGAAAGGGTGAAACAGTTAGGTCTCAGTCGAATGCGATCAATT
ATCATAAAGCACCCAGACCCAGATGACTCGACTATTTTCCATGAAATTCC
ATTGTCTCAGTTAAATGGCCAGGaatcaaattttcaagtttataaaatat
tgaaaaacctCATGATTGAAAAATACAAAGGTATTTCCCTGCAATTCttt
gatcttctacatgatCAAAAACACATAAATTGGCTTGGAGGCAACATAAA
CGATTTTTTCGTAGAGGAGGACACTCTCCGCGAGAAGCTGGTCTTAACAC
TAATAATCAAAGCAAACCGTGATAAGAATATGCAAAAGTTTTGCGAACAA
CATCACTTGACCTTTTTAAAAGAGTTAAACATTAAGTTTTTGACCGGACA
ATTTTCATTCGATGTTTTGTCTGGCAAGGTGAACACTATTCGCGATATTA
AGAATGAGATCTTCAAAACAAAAGGTATTGCGCCGCATTTACAACAGCTC
TACCACGAAAGCATCGAACTGACAGAAGATGGCAACAAATCAANAaagtt
ttcacctaaattagtTATTCTTTCCGTATTgactaaatttgattttttaa
ttttaggagtTAAAATCGACGGAATCACTAAATTTCAGCTCCTAAAATTC
CAGATTGTAAGCTAAAATAGATTGGTAAATATCAATCgtttttcaaaact
aaaaatttcgtaactgagaaaaaataccatgcaaacatacccttataaag
agatttctatccacgcatcagattttgagaaactgtttttacgaccaata
atcacttttaacaaagggaatctgaatatatgatgaagtagccaaagtga
gatattattctatctgataacaGTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004181-exon-sc0000039-1491911889:518248..519875 | TCONS_00004181-exon-sc0000039-1491911889:518248..519875 | Clytia hemisphaerica | exon |
| TCONS_00004181-exon-sc0000039-1510915933:518248..519875 | TCONS_00004181-exon-sc0000039-1510915933:518248..519875 | Clytia hemisphaerica | exon |
| TCONS_00004181-exon-sc0000039-1575043694:518248..519875 | TCONS_00004181-exon-sc0000039-1575043694:518248..519875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:518248..519875 . |
Blast
The following BLAST results are available for this feature:
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