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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004183 ID=TCONS_00004183|Name=TCONS_00004183|organism=Clytia hemisphaerica|type=transcript|length=1109bp
acaactcaaattggtgaaaattaggacattttaaaaacatttttagactt
tgaAAACAAATAAGGAATTGGCTAATTTCTCCAAAATATCTTTCCATCAA
AATTTCCTCCCTTTAGTCGATCAAATAATTATATAGAAGATTACCTCATG
TAACAACAATAGGAAACATATACAATTTTAATAAAACTGtattctttgcc
acggaaagtcatgtgactttttcaaccaataagatttaataatttcgagg
ataaaacaaacactatggtttaactcactaaaagattatgtttactgaaa
acacatctttagtaagtgttctgttgtaccccagttctgacgtcatgTCG
TGGCGAAGAATTGTTATAATGAAGAAGATGAGATATTATTTACATAATGC
TACATCTTCTGTTCGTAACGACAAACGTTATTTCAGTTTCTCCTAAATCG
TTCAGCAAAGTATTCGATTTTAATCCTTTGCTCTTTAAGCTGACGTTACA
AAAAAAACGTCGAGAATATTTTTCATGTAAATTGCCCAGAGTTTCTGTTT
TGTTCTTAATGATATAATGTTCTCTCTTGACGACTCCTTCGTTGTCGATG
AGAACGATCACTATTTTGTAAACCCAAATTTTATAGTTGGTTTTATGAAA
GTAACAATTCCATAACGGTTGGGAATCATCATCGAAGCAGCGATCACGAA
AAATCTTTATCAATTTCGAAGGAACCCCCGAACGAACGCTTATTTCTTCC
TTGAAATCTAAAATGGTAGCAGTCTCCAAAATCTCGATCTCCAATTGCTC
GTTTATGAAGTTTCCTTTTTTGACATAAATCTTGAATGTTTGAGGCGGTT
TCACAATGAGGTTTAAAGTGATTGGTTTTCCAGACATCATCATCATTTGG
GCTATGAAGGTCGAATTCTGGGCGTCATTTGGCACTTCAATATTTTCGTG
GTAGAGTTGTTGCAGATGTATTGGGATACTTTTTGCTTTGTAAATTTCGT
CTTTAATCTGACCAATAGTTGTATTGGCCCCtgacaaaatatcaaaagag
aATTCTCCAGTAAGAAATTTGATAATAACCTGTTTATAAGGAGATAAATC
ATACTTTNN Run BLAST on NCBI protein sequence of TCONS_00004183-protein >TCONS_00004183-protein ID=TCONS_00004183-protein|Name=TCONS_00004183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
XKYDLSPYKQVIIKFLTGEFSFDILSGANTTIGQIKDEIYKAKSIPIHLQ
QLYHENIEVPNDAQNSTFIAQMMMMSGKPITLNLIVKPPQTFKIYVKKGN
FINEQLEIEILETATILDFKEEISVRSGVPSKLIKIFRDRCFDDDSQPLW
NCYFHKTNYKIWVYKIVIVLIDNEGVVKREHYIIKNKTETLGNLHEKYSR
RFFCNVSLKSKGLKSNTLLNDLGETEITFVVTNRRCSIM Run BLAST on NCBI transcript from alignment at sc0000039:523195..524303 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004183 ID=TCONS_00004183|Name=TCONS_00004183|organism=Clytia hemisphaerica|type=transcript|length=1109bp|location=Sequence derived from alignment at sc0000039:523195..524303 (Clytia hemisphaerica)
NNAAAGTATGATTTATCTCCTTATAAACAGGTTATTATCAAATTTCTTAC
TGGAGAATtctcttttgatattttgtcaGGGGCCAATACAACTATTGGTC
AGATTAAAGACGAAATTTACAAAGCAAAAAGTATCCCAATACATCTGCAA
CAACTCTACCACGAAAATATTGAAGTGCCAAATGACGCCCAGAATTCGAC
CTTCATAGCCCAAATGATGATGATGTCTGGAAAACCAATCACTTTAAACC
TCATTGTGAAACCGCCTCAAACATTCAAGATTTATGTCAAAAAAGGAAAC
TTCATAAACGAGCAATTGGAGATCGAGATTTTGGAGACTGCTACCATTTT
AGATTTCAAGGAAGAAATAAGCGTTCGTTCGGGGGTTCCTTCGAAATTGA
TAAAGATTTTTCGTGATCGCTGCTTCGATGATGATTCCCAACCGTTATGG
AATTGTTACTTTCATAAAACCAACTATAAAATTTGGGTTTACAAAATAGT
GATCGTTCTCATCGACAACGAAGGAGTCGTCAAGAGAGAACATTATATCA
TTAAGAACAAAACAGAAACTCTGGGCAATTTACATGAAAAATATTCTCGA
CGTTTTTTTTGTAACGTCAGCTTAAAGAGCAAAGGATTAAAATCGAATAC
TTTGCTGAACGATTTAGGAGAAACTGAAATAACGTTTGTCGTTACGAACA
GAAGATGTAGCATTATGTAAATAATATCTCATCTTCTTCATTATAACAAT
TCTTCGCCACGAcatgacgtcagaactggggtacaacagaacacttacta
aagatgtgttttcagtaaacataatcttttagtgagttaaaccatagtgt
ttgttttatcctcgaaattattaaatcttattggttgaaaaagtcacatg
actttccgtggcaaagaataCAGTTTTATTAAAATTGTATATGTTTCCTA
TTGTTGTTACATGAGGTAATCTTCTATATAATTATTTGATCGACTAAAGG
GAGGAAATTTTGATGGAAAGATATTTTGGAGAAATTAGCCAATTCCTTAT
TTGTTTtcaaagtctaaaaatgtttttaaaatgtcctaattttcaccaat
ttgagttgt Coding sequence (CDS) from alignment at sc0000039:523195..524303 >TCONS_00004183 ID=TCONS_00004183|Name=TCONS_00004183|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000039:523195..524303 (Clytia hemisphaerica)
NNAAAGTATGATTTATCTCCTTATAAACAGGTTATTATCAAATTTCTTAC
TGGAGAATtctcttttgatattttgtcaGGGGCCAATACAACTATTGGTC
AGATTAAAGACGAAATTTACAAAGCAAAAAGTATCCCAATACATCTGCAA
CAACTCTACCACGAAAATATTGAAGTGCCAAATGACGCCCAGAATTCGAC
CTTCATAGCCCAAATGATGATGATGTCTGGAAAACCAATCACTTTAAACC
TCATTGTGAAACCGCCTCAAACATTCAAGATTTATGTCAAAAAAGGAAAC
TTCATAAACGAGCAATTGGAGATCGAGATTTTGGAGACTGCTACCATTTT
AGATTTCAAGGAAGAAATAAGCGTTCGTTCGGGGGTTCCTTCGAAATTGA
TAAAGATTTTTCGTGATCGCTGCTTCGATGATGATTCCCAACCGTTATGG
AATTGTTACTTTCATAAAACCAACTATAAAATTTGGGTTTACAAAATAGT
GATCGTTCTCATCGACAACGAAGGAGTCGTCAAGAGAGAACATTATATCA
TTAAGAACAAAACAGAAACTCTGGGCAATTTACATGAAAAATATTCTCGA
CGTTTTTTTTGTAACGTCAGCTTAAAGAGCAAAGGATTAAAATCGAATAC
TTTGCTGAACGATTTAGGAGAAACTGAAATAACGTTTGTCGTTACGAACA
GAAGATGTAGCATTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004183-exon-sc0000039-1491911889:523195..524303 | TCONS_00004183-exon-sc0000039-1491911889:523195..524303 | Clytia hemisphaerica | exon |
| TCONS_00004183-exon-sc0000039-1510915933:523195..524303 | TCONS_00004183-exon-sc0000039-1510915933:523195..524303 | Clytia hemisphaerica | exon |
| TCONS_00004183-exon-sc0000039-1575043694:523195..524303 | TCONS_00004183-exon-sc0000039-1575043694:523195..524303 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:523195..524303 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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