|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004213 ID=TCONS_00004213|Name=TCONS_00004213|organism=Clytia hemisphaerica|type=transcript|length=682bp
GTCCAACATGATAAAGAGGAAAGGAAAGgttaaaattcaaaatgtcaagC
AATGGCAAAAGACAAATAACCAACCAAGGTTGCAATCCTCAAGGGAATCA
ATACACCTCATATAATGATGGTAGCTATTACTATAGCAACAACAAAACAG
ATTCAAACACTGGACAGTCTTATAAAACCTCCTATTATGCACCAACTGGA
AACAACTCACAAACAGGTTTTTACAAAGATAACCATACCGGGAATAGTTG
GTATCAAAACTCACATGGTGATAAGAAGTATTACTGATGGTGATAGATGA
TGTTgttgattaaaaaagaaaggaattcatgatatgcaccattgcaatgt
cttccgttccacccaatagctgattggttgaaagtgacgtattgactgct
tttacgtcacttccaaccaatgagctattggttccatgacgtaatgtcag
aagacattgcagtggtgcatatcatgaatatatttAAAGAGAAGGCTTAC
TAATTAAAAAAAGAGAAGATAGAAATATTGTGTTATGTAaacatttttat
attattttttattttgcatcAGATTATATTGTTTTGTACATGCACCTTTT
GTAGTTTTCACACTTAGCAATATTGAAACTAAATACACTGCCTAGTGTCA
CTATTCATACAGATTTTCTTTTACATAACCCA Run BLAST on NCBI transcript from alignment at sc0000041:118822..124543+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004213 ID=TCONS_00004213|Name=TCONS_00004213|organism=Clytia hemisphaerica|type=transcript|length=5722bp|location=Sequence derived from alignment at sc0000041:118822..124543+ (Clytia hemisphaerica)
GTCCAACATGATAAAGAGGAAAGGAAAGGTAAACTGATTTCTTTTGACCA
TTCCAGAACTTCAAATACCCATGATTTAGGCGTGAGTGCCATTCTGCtaa
catgaattttttttaacaaggtgttttttttaatcattcctgTTGTATCC
CAGGGCCAGGCTGCAGgctcaacctcgttccctgtgtgTTATCAGCTTTT
GTTATGCTTGCttatagcgctagataataccctggcgtTGTCCATTTAAG
ACATAAGATAACATAatccaaaaacaaaacgtcaaaaattcatttgttca
ttttttaaagCCGTTGCATTGCAGGTAAACTATTTGGTTTCGAACTCTAT
CAACCGTGTTTTATATTTCAGCTTCATTCAATCACAAATTCAGTATGGAC
TGTCTTCACGGGGGTCACCTTCAACGAAGGGAACAGCTCCTATATCTAAT
ATAATCGAAAAAATAATACATAATATAAATAAACATAATCCTGATGGAAT
TGATGACTTTAAACCTCTAAATCTAAACAAACTATATCATGCAATGTTGT
AAACTCATTTACTCGTATGTCAAAGATAAAACACTCCCAACCTCATTGCA
TTGCTTATTTAATCGTCCAGACCACATGCATGGGACTAGACACGCAGACA
ATCATGGTCTCTTTAATAATATTCATCTTTGTAATGCTAATTTACCAATC
TCCTTCTATGCTCCGCAGTTTTGGAACAATTTCTGTCACCTCACTCGTGA
TACCTTTTCCATTGAATTGAATCCTTTACTACACATTTAAAACGCAATCT
TCAAAACTCTGATGATAGCTAGTaaacttttacttttacttttttaccaA
GTATCCGAGctctaaacttttactaccgTAACACTTTCATTGTGTTCTTT
ATGTTCAAACTTAACATATTCGTAtattttgttttcgttttttcgTCGTA
TGACGCTTTTTATCCAACATTATCTATCAGTTGTAGCTGttaaaaagcta
tttttattGTTCATATCCTTAAAAACATGTACATAGTTACCAAACATATA
ATATTTCCCTGGCGGCTTTGAAAACCTCCTACAGGTTACATTGCCAGGCG
ATAGGTTATTTTGTAATAGATGTTatgatattttgagaaaaaaaaagaaa
aaaaaaaagtccaGTGTAACTTTTGTAACGTCAGAATGCTTtgtgacgta
ttgttttgatgttttgtgAAGTTTCCCCCTTGAGGAGAGGGGGAGCTTGC
ATCAGCCttcaccagggtattctctggtgTCTATCATATCAGTAAGGCGG
CAATTACAAATATCTTTATTTCGAGTCACCTGACCGACTCTTGAAAATTg
agtaccgtaacttggtctaatgtcgacatccctcctctaatttcgacacc
ttttttatcagctgaaattgatagaatggttgaaactgtttttccttGCT
TAATGGTTAGAGAGAAattattctttttcaatcagtgattcaagctttca
tattattcctgtctctaaaaaagggtgtcggaattagacgagggatgtcg
atattaggcCAACTTACGGTAGTATTGAGTTGGAGAGTCAGTAAATTTGT
TGGATTTTTTGCGTTGAtgtttcctttgctcaaaaatgTTATCATTGCCA
ATAAtttgcgagcgatttctagcgcatttggatttagttggaaaaataaa
atatgcaaaacatatgcaagtttacacaaagattaaaaaggcaacaaagc
atcttataaagaaatattataatcattagaacaataaaagatggaatttc
ttaatccaaaaagaaatattcacagaacaacaaaagcctttttgaaattt
gttcttaaagacattgcatattctgttttcatgccattaaaaaattccac
caagacggagtacacacatgaaactttcaaaacacgcaaactgaaagcag
taattaataattatgacgtcaaaCATTCAGCGGGtttagatcaatgtttt
gatttgatcgtttggcggttctattcccaggagaaaaatatttttgtacc
ttcgcgGATGATTTTTAAGCTTGAGTTCGtataatgttatggttttttga
agtgcttgttctaagagttgagtgaatttgattatttctagttttcaaaa
gaagcaaatttaatctttgttctacaagattacactttaatataatgcca
attatgcatgtaagttttatataaatactttctttttgcatatgttttgc
atactttctaagggaatttcaccacggcaattcggccaccataatttttg
catacaattcaatatggcgggtggaaaggcgaaaaggtctattgaaaccA
CCTAAATGTTTTGGCTGGCTGGCTATCGAACATTTTTCTTCGCCTCAATT
AACGCCCTTTTTTAACCACCTCACAGACCAAATTTaagaaaacccgaaaa
tttttacgaccgaccaactcactttttagaccaaaCGAGGGCGCAAAATG
AAGatatatttgtgattgccgtcTAATGACtaatgtaaataaagcctgga
atacacagGGACAAAAACAAAAGGGTGAGCaagattaaaaataatcaaat
ttggCAAGAGTAGTTTAATTTCGCCTTCGGGCGGCAGATTTTCTAGGTAT
GTATATTCACCTAATTTGCCAAAATTCCTTCACTTCACTTTCCAATACTT
GtacggtcgtggcttcttcgtacaggtgtttctatttctattggATTGGA
ACCCACATATGAAAAGTTCCTTCGGTTCAGAAGCTCCGTACTATACCACT
AGGCCATGAAGCCACGGCACAATTTGGAATTCACAATCTACATatagtgt
gtattttacagacctacATATCGTATCgtcgtgtcaattcaagacagctg
tcattttttccattttgagatagTTGACCTTAAAGGCTTCATTTGCTGAT
AACTAAGAAATAAATGATGCCAAAAGTCCATACTTTTGATATTATGGGGG
TTATTATGGTTATCTTTTTGTGGTTAAAAAGAGGTTTTAATAGCTTGCTC
CAGAGGCTCTAAAATGgcatttatttgatttttaaggctGAATTGAATTG
AACTTTATAATCTTCATACTAAGCAAGTTTCAAGCTAGAATCGAGATTTA
AAATGCCTTAAGTCCATCAACCAGATTTGTTGGCCTTAAAGGCATTTCAT
GTTGATGCtccatagaaaaataaaatttggacaCAAGGCTTCTTTTTGCC
CTAAAATTcaggacttaaggctgtttatggttgatattatggaacattct
aaattatcttttttgaattGGAAAGCCTGCATGCTGAAATAGGGGGTTAT
GGTctttaagtcaattttcaaaaaaatgaacttAAGTcagtcttgaattg
acacggcgatatATTAACATACCAGGGCTAGCCCCAACCCTAGGGGTATC
CTTACCAGGTCCTAGAGGCCTATATTTACCTAACAATGCTACTCCCAACC
CTATTTTGGCTCTCGaactccaaccctgaccctaactgatccTGACCCTA
ACCAACATAAACAATTTTCACCCGGGATTGAATAACAAAAATCTACTTTC
ACTCGTACAATGGAGTCAGCACCTACATGCCTTGTACTGtatgaaaatca
tcaaaatttcgcTAGCCAATTTTACAAATTAAACAGGGCAGAGATGAGTG
ATCTTTGAGTGAAATTTCTTTACAATTATAAAAAACTACAACATTTGATT
TACCAGGAAGGTAATTTTagcaaattcaaaaaataattaagactgtgaat
tttaagttttgcttttttAGCCTTATtcataactttttgatttttaaagt
tttgttttagatttgttcttttctcaattttgtaaaaacgattttgtttt
gttttgaaaagaatttgaattacattcgaaaaggtataaaagaaaagaga
aaaaagtcaGGTCAGAAATTAAAATTGCCTAATGTAGATGGGtgtttaat
ttcaaaacaagaagcccagagggcatgaaggcccagcgaataaaaatatg
aactgaacaagacttgagTAGCAGAGGGGGTTTGAACCAGGAGTCACTAG
TACAAGCCAtagacgccttagaccactcggctaTCTCTTATTTGCATCAA
TGAGAAACAATCCAAAATATTTAATGTTATATACAGAGATGTTTTGTTCC
TAAgacgtgaacaactgaactgttcacatgatagagaaatgtaaaaaaca
acttttttaaaagaacatcttcctaaagagaagaagATTTGTTATGGTTA
TTTCTGTGTAAATCACAATGTTTTTCCTAAAACGTACTACATCTGTTATA
TTCTCATAGTTTTAGtagttaattgtattttctctttttatgtttttaac
caatGAAGACGATTgcaattgttttttattctgtCAATCATGTTCTAAAG
AGATATGTTTCAGCCAATCAAGTTTTTCACAATATGTACTAGCCTGTGCT
TGAATTgaaaacgcgtatcgcctagtaaattgttacacacttgacaccgg
gcagaatgctaatgaaaagCCCAGTACCctaaagctagctgggccaaCAA
AGTCCGAACAAAGTCTAAACCAGACTCTATCAACAAAAACACTGCAAAAA
CGAAGGTAACATACAgatagacagacagacagacaaacaaacaaagtgac
atacagactacggctattaatacaTAGATTTGGTGTGCTAGGCCTCTTTT
AAATTTGCCAGTGGgcaaatttttctcaattttgagcaatgttaagtaaa
attttcaaatcaagaaaCTAATAATGGCATGACCACCAAATGGACttcaa
aaaacaattaattATTTGACATGACATTATTGTCTTTGAGAAAGGTTTGC
AGAGATTCTCAATCACTTTTGTTCTGCTgtaaataaaggaaaaaagaatT
TGGTGGGGTTGATCTTTTTTCCTAAAAAGTTCTTTAGTGCATAGATACAG
AAGAGTCTCAGGGTGCTCATAATATTCATAATTCAAGCtctattattttt
tagaatcaTATTTTAAaggttaaaattcaaaatgtcaagCAATGGCAAAA
GACAAATAACCAACCAAGGTTGCAATCCTCAAGGGAATCAATACACCTCA
TATAATGATGGTAGCTATTACTATAGCAACAACAAAACAGATTCAAACAC
TGGACAGTCTTATAAAACCTCCTATTATGCACCAACTGGAAACAACTCAC
AAACAGGTTTTTACAAAGATAACCATACCGGGAATAGTTGGTATCAAAAC
TCACATGGTGATAAGAAGTATTACTGATGGTGATAGATGATGTTgttgat
taaaaaagaaaggaattcatgatatgcaccattgcaatgtcttccgttcc
acccaatagctgattggttgaaagtgacgtattgactgcttttacgtcac
ttccaaccaatgagctattggttccatgacgtaatgtcagaagacattgc
agtggtgcatatcatgaatatatttAAAGAGAAGGCTTACTAATTAAAAA
AAGAGAAGATAGAAATATTGTGTTATGTAaacatttttatattatttttt
attttgcatcAGATTATATTGTTTTGTACATGCACCTTTTGTAGTTTTCA
CACTTAGCAATATTGAAACTAAATACACTGCCTAGTGTCACTATTCATAC
AGATTTTCTTTTACATAACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004213-exon-sc0000041-1491911889:118822..118849 | TCONS_00004213-exon-sc0000041-1491911889:118822..118849 | Clytia hemisphaerica | exon |
| TCONS_00004213-exon-sc0000041-1510915933:118822..118849 | TCONS_00004213-exon-sc0000041-1510915933:118822..118849 | Clytia hemisphaerica | exon |
| TCONS_00004213-exon-sc0000041-1575043694:118822..118849 | TCONS_00004213-exon-sc0000041-1575043694:118822..118849 | Clytia hemisphaerica | exon |
| TCONS_00004213-exon-sc0000041-1491911889:123890..124543 | TCONS_00004213-exon-sc0000041-1491911889:123890..124543 | Clytia hemisphaerica | exon |
| TCONS_00004213-exon-sc0000041-1510915933:123890..124543 | TCONS_00004213-exon-sc0000041-1510915933:123890..124543 | Clytia hemisphaerica | exon |
| TCONS_00004213-exon-sc0000041-1575043694:123890..124543 | TCONS_00004213-exon-sc0000041-1575043694:123890..124543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:118822..124543 + |
Blast
The following BLAST results are available for this feature:
|
