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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004217 ID=TCONS_00004217|Name=TCONS_00004217|organism=Clytia hemisphaerica|type=transcript|length=2743bpRun BLAST on NCBI transcript from alignment at sc0000041:137945..152581+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004217 ID=TCONS_00004217|Name=TCONS_00004217|organism=Clytia hemisphaerica|type=transcript|length=14637bp|location=Sequence derived from alignment at sc0000041:137945..152581+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004217 vs. Swiss-Prot (Human)
Match: TFE3 (Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4) HSP 1 Score: 166.392 bits (420), Expect = 4.720e-43 Identity = 108/264 (40.91%), Postives = 157/264 (59.47%), Query Frame = 1
Query: 502 PAMSLPSSVLKVETKLQNPTSYYLKQQQKRQVREYLEQ--NNQLSTNM--PVSVPTALQQNYNXXXXXXXXXXXXXXGGNPMSPNSPDAASSVASGGES--NDFFEDLFS-------EDLNIFSA---------TLPTNNNLLDTYVNNPTQKNEENQISISSSCPA---NVKQEEPDT---FFNKERQKKDNHNMIERRRRYNINDRIKELGTLVPK-IDNDMKQNKGTILKSSVDYIRRLKKDRERLRNVEHRSQSLEDINK 1206
P +P VLKV+T L+NPT Y+L+Q +++QV++YL +L++ P P + Q +P ++ G +PNSP A ++ S E +D +++ S E L+ TLP + NLLD Y +Q I++S+SCPA N+K+E +T KERQKKDNHN+IERRRR+NINDRIKELGTL+PK D +M+ NKGTILK+SVDYIR+L+K+++R +++E R +SLE N+
Sbjct: 168 PPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPASAQ-------PLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTTGLQLPSTLPVSGNLLDVYS---SQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANR 421 The following BLAST results are available for this feature:
BLAST of TCONS_00004217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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