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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004219 ID=TCONS_00004219|Name=TCONS_00004219|organism=Clytia hemisphaerica|type=transcript|length=3180bpRun BLAST on NCBI protein sequence of MITF >TCONS_00004219-protein ID=TCONS_00004219-protein|Name=MITF|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MTCLWNENPSFLMDPDVKIKPDPDDQAMNMQTMEIMNRTNFKQALERERIRun BLAST on NCBI transcript from alignment at sc0000041:137954..152581+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004219 ID=TCONS_00004219|Name=TCONS_00004219|organism=Clytia hemisphaerica|type=transcript|length=14628bp|location=Sequence derived from alignment at sc0000041:137954..152581+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:137954..152581+ >TCONS_00004219 ID=TCONS_00004219|Name=TCONS_00004219|organism=Clytia hemisphaerica|type=CDS|length=14340bp|location=Sequence derived from alignment at sc0000041:137954..152581+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004219 vs. Swiss-Prot (Human)
Match: TFE3 (Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4) HSP 1 Score: 166.392 bits (420), Expect = 7.662e-43 Identity = 108/264 (40.91%), Postives = 157/264 (59.47%), Query Frame = 3
Query: 939 PAMSLPSSVLKVETKLQNPTSYYLKQQQKRQVREYLEQ--NNQLSTNM--PVSVPTALQQNYNXXXXXXXXXXXXXXGGNPMSPNSPDAASSVASGGES--NDFFEDLFS-------EDLNIFSA---------TLPTNNNLLDTYVNNPTQKNEENQISISSSCPA---NVKQEEPDT---FFNKERQKKDNHNMIERRRRYNINDRIKELGTLVPK-IDNDMKQNKGTILKSSVDYIRRLKKDRERLRNVEHRSQSLEDINK 1643
P +P VLKV+T L+NPT Y+L+Q +++QV++YL +L++ P P + Q +P ++ G +PNSP A ++ S E +D +++ S E L+ TLP + NLLD Y +Q I++S+SCPA N+K+E +T KERQKKDNHN+IERRRR+NINDRIKELGTL+PK D +M+ NKGTILK+SVDYIR+L+K+++R +++E R +SLE N+
Sbjct: 168 PPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPASAQ-------PLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTTGLQLPSTLPVSGNLLDVYS---SQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANR 421 The following BLAST results are available for this feature:
BLAST of TCONS_00004219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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