TCONS_00004221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004221
Unique NameTCONS_00004221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004221 ID=TCONS_00004221|Name=TCONS_00004221|organism=Clytia hemisphaerica|type=transcript|length=1772bp
CTTTGATTTTGTTTCATCAATAACTCATTGATGAATATTTTACGACGTTT
GTTTTCCCTGACAACTCTGtgaaattaaacaaatttttaaacattttttc
tatttttcagctTCTTTTTTCAGAAGTCAACTTGAAGaaCACCAACAGAT
AACttaatttgagtaaattatgaATCTTTCCACCACCACCACAACCTTGG
CGTCACTCTCCACAACCACCACTATGGCGCCACTCTCCACCACATTGGAT
CCGCTCATCCACAACATGTCGTGTGAAGTACCGCATGATGATCAATCGAA
AGTATACACTTATCATCTCTCTGCATCTTTCGTCGCTTCATCAACTTTCA
TTGCTATCCTGAATTTCGTGATGGCCATCCCTTGCGCTTTCACAAATCTT
CTCATCATCTTTGCTATCATCAAAAACGAACATCTTCAGATCACCCCATA
CAAACTCCTCTTTAGTATTTGTCTGGCAGACCTCATCACCGGAGCTGTCG
CGCAACCCATATTTGGAACGCACATTTTCCAGATCAGTGCAGCTGATCAT
CAATGCCCATTATCCAATTTCATGATTTATATCGTCCCTGTTCTCATTCT
CGTTACCATGGTAACTCATGCTGTCTCtgcgttggaaagatattgcaGCA
TCCACTATGTGAAGAATTACGAGAAGATTTTCAGTTCGAGATTTGTTGCA
GGGATTTTGCTACTGGTGTGGAGTATCTCATCCATATGTTTCGTAGTTCC
TTTCATCAGTGGCAAAACCATTGTCGGCGGTCGCATCGTCATAGCTCTGA
TCCTCGTCTCACTTGCCATTTGCTCTTACTGTTACATCTCCATGTATCAA
GACTTCAAGCAGCAGTTCGTGCGAACGACCGCCAAGATCCAGGGAGCGTA
TATCATCAGGGAGGAGCATCCGGTCGAGCGCACTGCAGACgaacaacaaa
aatttcaaaagaacatcAAAATTGCATCTTTCTTCAACAAGTTGTATCTT
TGCATGTTTGTCATCTACCTGCTGACCATCGTCAAAAATATTCTAGTCGC
TTATGACGTCACCGTGGATAACGCTACATACACACTAAGCTTTGTTTTTG
ATACGATTTTGTTTTCGAATGCTTTCATCAATCCATTTCTGATCTTTAaa
ttcaatgatgaaatttatgCATGTGTCAAAGACATCTTTTCGTAACGaat
ttttataatatacaagATAGATTTTCATATGGAATATTTATTGTCTATAT
CTAACAGTGGCAAAAATTGAAATGACGAGAATGCATAGATCTTCAATGCT
TAGAATTCTCTAGCACGAtgtcaaaacttttttcttaaaaaatgtgaAGT
TCGAGAAAACTTTCAACAACTCGAAGATTTTGATCATGGAATTCTGCCTG
CCGTACTGCGCAAATATTTATACCTTGTATACCTTGTATCTTGCTTCAAA
CAGTTGACAAACATTTGTATCTCAATCAATTTCATATTGTCTTTCGCTCA
TTAAGGTGACCAGTGATAAAAAAGTCAACGAGGTCTTCTTTATCGAATGT
GTTTATCATGTGAGGGTGGTGCTAATGAAGTATAAcctcgaagggctaga
agcgaatctccaACCTCGGGGTACTTGCTAAAGCACTCCCCAATGGCCTC
ATGAGGTGCCGCCCCTTaacgaaaatgttttttttaggttttttcgaAGC
GTTTCGATATAGAAAATGAGATGGGGCATGGTCagatcatagtcattata
aaaaaccctggtctgttAATGT
Run BLAST on NCBI

protein sequence of TCONS_00004221-protein

>TCONS_00004221-protein ID=TCONS_00004221-protein|Name=TCONS_00004221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MNLSTTTTTLASLSTTTTMAPLSTTLDPLIHNMSCEVPHDDQSKVYTYHL
SASFVASSTFIAILNFVMAIPCAFTNLLIIFAIIKNEHLQITPYKLLFSI
CLADLITGAVAQPIFGTHIFQISAADHQCPLSNFMIYIVPVLILVTMVTH
AVSALERYCSIHYVKNYEKIFSSRFVAGILLLVWSISSICFVVPFISGKT
IVGGRIVIALILVSLAICSYCYISMYQDFKQQFVRTTAKIQGAYIIREEH
PVERTADEQQKFQKNIKIASFFNKLYLCMFVIYLLTIVKNILVAYDVTVD
NATYTLSFVFDTILFSNAFINPFLIFKFNDEIYACVKDIFS
Run BLAST on NCBI

transcript from alignment at sc0000041:152662..154529+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004221 ID=TCONS_00004221|Name=TCONS_00004221|organism=Clytia hemisphaerica|type=transcript|length=1868bp|location=Sequence derived from alignment at sc0000041:152662..154529+ (Clytia hemisphaerica)
CTTTGATTTTGTTTCATCAATAACTCATTGATGAATATTTTACGACGTTT
GTTTTCCCTGACAACTCTGtgaaattaaacaaatttttaaacattttttc
tatttttcagctTCTTTTTTCAGAAGTCAACTTGAAGGTATGATAACTTT
TAAGAATTTGTAAGTATTAATATATAGCAGTGGATTTTCGAAGGTTAATC
GCTGGAATCAATTcatagtttctttcattttagaaCACCAACAGATAACt
taatttgagtaaattatgaATCTTTCCACCACCACCACAACCTTGGCGTC
ACTCTCCACAACCACCACTATGGCGCCACTCTCCACCACATTGGATCCGC
TCATCCACAACATGTCGTGTGAAGTACCGCATGATGATCAATCGAAAGTA
TACACTTATCATCTCTCTGCATCTTTCGTCGCTTCATCAACTTTCATTGC
TATCCTGAATTTCGTGATGGCCATCCCTTGCGCTTTCACAAATCTTCTCA
TCATCTTTGCTATCATCAAAAACGAACATCTTCAGATCACCCCATACAAA
CTCCTCTTTAGTATTTGTCTGGCAGACCTCATCACCGGAGCTGTCGCGCA
ACCCATATTTGGAACGCACATTTTCCAGATCAGTGCAGCTGATCATCAAT
GCCCATTATCCAATTTCATGATTTATATCGTCCCTGTTCTCATTCTCGTT
ACCATGGTAACTCATGCTGTCTCtgcgttggaaagatattgcaGCATCCA
CTATGTGAAGAATTACGAGAAGATTTTCAGTTCGAGATTTGTTGCAGGGA
TTTTGCTACTGGTGTGGAGTATCTCATCCATATGTTTCGTAGTTCCTTTC
ATCAGTGGCAAAACCATTGTCGGCGGTCGCATCGTCATAGCTCTGATCCT
CGTCTCACTTGCCATTTGCTCTTACTGTTACATCTCCATGTATCAAGACT
TCAAGCAGCAGTTCGTGCGAACGACCGCCAAGATCCAGGGAGCGTATATC
ATCAGGGAGGAGCATCCGGTCGAGCGCACTGCAGACgaacaacaaaaatt
tcaaaagaacatcAAAATTGCATCTTTCTTCAACAAGTTGTATCTTTGCA
TGTTTGTCATCTACCTGCTGACCATCGTCAAAAATATTCTAGTCGCTTAT
GACGTCACCGTGGATAACGCTACATACACACTAAGCTTTGTTTTTGATAC
GATTTTGTTTTCGAATGCTTTCATCAATCCATTTCTGATCTTTAaattca
atgatgaaatttatgCATGTGTCAAAGACATCTTTTCGTAACGaattttt
ataatatacaagATAGATTTTCATATGGAATATTTATTGTCTATATCTAA
CAGTGGCAAAAATTGAAATGACGAGAATGCATAGATCTTCAATGCTTAGA
ATTCTCTAGCACGAtgtcaaaacttttttcttaaaaaatgtgaAGTTCGA
GAAAACTTTCAACAACTCGAAGATTTTGATCATGGAATTCTGCCTGCCGT
ACTGCGCAAATATTTATACCTTGTATACCTTGTATCTTGCTTCAAACAGT
TGACAAACATTTGTATCTCAATCAATTTCATATTGTCTTTCGCTCATTAA
GGTGACCAGTGATAAAAAAGTCAACGAGGTCTTCTTTATCGAATGTGTTT
ATCATGTGAGGGTGGTGCTAATGAAGTATAAcctcgaagggctagaagcg
aatctccaACCTCGGGGTACTTGCTAAAGCACTCCCCAATGGCCTCATGA
GGTGCCGCCCCTTaacgaaaatgttttttttaggttttttcgaAGCGTTT
CGATATAGAAAATGAGATGGGGCATGGTCagatcatagtcattataaaaa
accctggtctgttAATGT

Coding sequence (CDS) from alignment at sc0000041:152662..154529+

>TCONS_00004221 ID=TCONS_00004221|Name=TCONS_00004221|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000041:152662..154529+ (Clytia hemisphaerica)
atgaATCTTTCCACCACCACCACAACCTTGGCGTCACTCTCCACAACCAC
CACTATGGCGCCACTCTCCACCACATTGGATCCGCTCATCCACAACATGT
CGTGTGAAGTACCGCATGATGATCAATCGAAAGTATACACTTATCATCTC
TCTGCATCTTTCGTCGCTTCATCAACTTTCATTGCTATCCTGAATTTCGT
GATGGCCATCCCTTGCGCTTTCACAAATCTTCTCATCATCTTTGCTATCA
TCAAAAACGAACATCTTCAGATCACCCCATACAAACTCCTCTTTAGTATT
TGTCTGGCAGACCTCATCACCGGAGCTGTCGCGCAACCCATATTTGGAAC
GCACATTTTCCAGATCAGTGCAGCTGATCATCAATGCCCATTATCCAATT
TCATGATTTATATCGTCCCTGTTCTCATTCTCGTTACCATGGTAACTCAT
GCTGTCTCtgcgttggaaagatattgcaGCATCCACTATGTGAAGAATTA
CGAGAAGATTTTCAGTTCGAGATTTGTTGCAGGGATTTTGCTACTGGTGT
GGAGTATCTCATCCATATGTTTCGTAGTTCCTTTCATCAGTGGCAAAACC
ATTGTCGGCGGTCGCATCGTCATAGCTCTGATCCTCGTCTCACTTGCCAT
TTGCTCTTACTGTTACATCTCCATGTATCAAGACTTCAAGCAGCAGTTCG
TGCGAACGACCGCCAAGATCCAGGGAGCGTATATCATCAGGGAGGAGCAT
CCGGTCGAGCGCACTGCAGACgaacaacaaaaatttcaaaagaacatcAA
AATTGCATCTTTCTTCAACAAGTTGTATCTTTGCATGTTTGTCATCTACC
TGCTGACCATCGTCAAAAATATTCTAGTCGCTTATGACGTCACCGTGGAT
AACGCTACATACACACTAAGCTTTGTTTTTGATACGATTTTGTTTTCGAA
TGCTTTCATCAATCCATTTCTGATCTTTAaattcaatgatgaaatttatg
CATGTGTCAAAGACATCTTTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002351XLOC_002351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004221-proteinTCONS_00004221-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004221-exon-sc0000041-1491911889:152662..152798TCONS_00004221-exon-sc0000041-1491911889:152662..152798Clytia hemisphaericaexon
TCONS_00004221-exon-sc0000041-1510915933:152662..152798TCONS_00004221-exon-sc0000041-1510915933:152662..152798Clytia hemisphaericaexon
TCONS_00004221-exon-sc0000041-1575043694:152662..152798TCONS_00004221-exon-sc0000041-1575043694:152662..152798Clytia hemisphaericaexon
TCONS_00004221-exon-sc0000041-1491911889:152895..154529TCONS_00004221-exon-sc0000041-1491911889:152895..154529Clytia hemisphaericaexon
TCONS_00004221-exon-sc0000041-1510915933:152895..154529TCONS_00004221-exon-sc0000041-1510915933:152895..154529Clytia hemisphaericaexon
TCONS_00004221-exon-sc0000041-1575043694:152895..154529TCONS_00004221-exon-sc0000041-1575043694:152895..154529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:152662..154529 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0502876	0	0.16932	0	0	0.301984	0	0.390942	0	1.94711	3.03988	0.610468	0.655125	0.26902	0	3.77037	1.19932	1.03945	0	0	0.373558	0.384756	1.03016	0.404614	0.232516	0.327516	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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