TCONS_00004223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004223
Unique NameTCONS_00004223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1977

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004223 ID=TCONS_00004223|Name=TCONS_00004223|organism=Clytia hemisphaerica|type=transcript|length=1977bp
ATAAGCTGTATTTGTTACAATAAATATCTCGCGAGTATCCTACTAGTAGT
ATACGAAGTATAACCTCGACTGCACAGTGGTGTGATTGAAAACATTCAAG
GAGATCAAGGGTcatTTTTTATACCGACAAATTTTAATGGTTGGCAGGTT
TTTCATATGTCTAAAAGTTAAAATGTGAAATGAAATGAATGGGAAAATAA
AAACGTAATGTTCTTATTGTATGTGCAAGCTGTTTCAACCTTTGCATGCT
TTATTATTGGCTTTTTGATCTCCATTCCAATTGGATCGAACCGGTCTAAA
CATGACGGCCAGTGTTTACTATACGCCAATCTTGAAATTCATGGCCCTCC
AGAGGATGGTTTGATTAGCAAGAACTTGCTGCCCGGCTCAAGACTTACTT
GtgatttttgcatattttctgGAACTGTATCTTTGATTATTGGATTGGTG
TTGTTGATAGCTACTATTTATACTATTCTACAAAATGGATTCAAACGATT
CAACTTGACCAGATATATTGGTGATcgcgaaaaaaggaaaaataaTAAGC
CGTTGATAGGAGCTTGGATAAATTTTTGCAGTGCAGCTGTCATGGCATTG
TTGACGTTCGTCACAGCTTGTCTCATATCATCTGGCTTTCACGAGTTCTG
TGAGCAAGGTCTGAAGAATATACACAAAGCTGATCTCGGAAACTGTGACC
TGCTTGAAAGATATGTCGGTCCATTTTATAAACAGTTGACAATAGCTCAG
GTCAGCGCGTGGTTGGGAGCGCTGTTTTGGATCATTTTAACGGTGACAGG
TCGAATGAATGTCCGAAATATGCGTCCGAAACGAACCCGGTTAATGGCGG
ATGATGGTGAAGACTATCAGCAGATCGAAAGTCCCACCCATTTGTGACGG
AATATTCCTTACATTGATGAAACGTAATCAAATTAACATAGTAACGCTCC
TTCTTCAACTACTGGGTGAGCTAAATTGAGCTAAATTCAGTGCTGATTGC
TGCATaacggtttttttttttttgaccttGCAAAAGGTCGAACAaattat
tatacatttttttgctgaagAGACAAGATTTAGCTTGTGTGACTACGGTT
TTATTTTTTGGGGTGTTCACATTTTTCCTTTCGATGATTAGGGGTTACTT
TTACGTCGATGATTAAAAACCGTTCTCCTGCTATCATACAAGACTGTCGA
ACTTTGACAGGTGTCAAACAAACTCGGAAATTTCAGGGAACAGGCCTTTt
cagaaattattttgagtgcaactaCTGCCTCTCTTTGAAACCGTTACCAA
GGTGATTTGATCCCTTAAGTCTTCAAGTGTTTCTGTTATGAATAGAgtaa
aaattcttataaaatccCCTCGGATTCCGAGGTAAGcgttgttcgtgacg
taatttatgagaAGGTCTATTGGCTATCTTTTCACAAGAACGATCTTTGA
GGAGTGTTAAATGAAACATTTCAAGCTAGGTAGAAGAATAGAAAGtagaa
tttatatttttaaacttttaaggATTAAACAAATATAAGatattttatga
tttatgaAAATTAGGATTATGTTCAGTTTATTATGAAATCGATTTTGGAG
AACTTtttgtctttatgctgacaCTGTACATATCTGTAAgtatttttaag
aaagaaactttttcttacGGAGATTTATTTATTAAGATCTACACAAGAGT
TTTTCATTTCTCATTCATAATCATAAACATACCTTTTCGGACAAGCCCCC
TTAGTGATAACTGCCTTACTTTGGTACAATGCCattattttgtaatttct
gAAGGTAAAACTGAGGAGTGTTGTACGGTCTTTTATGAGATACTGTAATC
GATTTAATGGATGACGAAAGAAGAATGTTAATTTGATGCGCTTCTGTTGa
ggaaaatcataaataaaGCTTGCCGGTATTTACATTGTTCACATGTAACC
TAAATACGTAATAAGCGATCTCCGAAA
Run BLAST on NCBI

protein sequence of TCONS_00004223-protein

>TCONS_00004223-protein ID=TCONS_00004223-protein|Name=TCONS_00004223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MFLLYVQAVSTFACFIIGFLISIPIGSNRSKHDGQCLLYANLEIHGPPED
GLISKNLLPGSRLTCDFCIFSGTVSLIIGLVLLIATIYTILQNGFKRFNL
TRYIGDREKRKNNKPLIGAWINFCSAAVMALLTFVTACLISSGFHEFCEQ
GLKNIHKADLGNCDLLERYVGPFYKQLTIAQVSAWLGALFWIILTVTGRM
NVRNMRPKRTRLMADDGEDYQQIESPTHL
Run BLAST on NCBI

transcript from alignment at sc0000041:196237..217305+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004223 ID=TCONS_00004223|Name=TCONS_00004223|organism=Clytia hemisphaerica|type=transcript|length=21069bp|location=Sequence derived from alignment at sc0000041:196237..217305+ (Clytia hemisphaerica)
ATAAGCTGTATTTGTTACAATAAATATCTCGCGAGTATCCTACTAGTAGT
ATACGAAGTATAACCTCGACTGCACAGTGGTGTGATTGAAAACATTCAAG
GAGATCAAGGGTcatTTTTTATACCGACAAATTTTAATGGTTGGCAGGTT
TTTCATATGTCTAAAAGTAAGTATTATTTTTGTATACGAAAGAGGtgaat
caattgtaaaaggggttacgcacgatacgaaaatctcgtgttcgcccaga
cccccgcgctcgataggatcgatcatcggaacggctcgatgacggatcga
tatgtgatcgatggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNtagtgagattgaccattttgttgtttagatttg
agcgggcgaaatttctgtacaaaccaaaatatggcttcgttggaataccg
gttgaaacacttgtgtaTCGACTCTTTCTTAAAATCGAGCTCTAATATTA
ATCGATCTTTCtcgctatcgattacctatcgacacctatcgattacctat
tgACACCTCTATtgatccaatcaaaatatcgaccgtttttttatattgat
taatCGATCCATATCGATCTAATGGCGTCAAACCGGATTTACTTATCGGT
ACTTATCTGGCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNACATctgctggaaggtttagattacggaatttcgcctgagcCCT
AGCTCGATTTTtaatcgatgcataatcgatttataatcgatgcatactcg
attaatgatcgatgacgaattgattaatgatcgatgacgaatcgattaat
catcgatgacgaatcgattaacgatcgataacgaatcgattaacgatcga
tgacgaatcgattaacgatcgacgacgaatcgattaacgatcgacgacga
atcgattaacgatcgatgacgaatcgattaacgatcgatgacgaatcgct
taacgatcgatgacgaatcgatNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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tcgatctcctatccggatcgataagtaatccatcgatcacatatcgatcc
gtcatcgagccgttccgatgatcgatcctatcgagcgcgggggtctgggt
tcgcaagcgaaaggttttttacactacataccgtaggattgctaaacttc
cttattcccagcgaaactttccgattgctagtgtaaaataaaccaaaacg
ccacaaaagtagatttaacaccgattttagCCGGAGACGTCTAGAAGCAA
AAAGATCCAGGAGACggggcaggtatgttttcccggggatgagaaagtta
gccattttatgatacaattttaaagAGTTGTAccacgaccctgcctatgc
cccggacagtccggggcaaatgtctggggtctgaaaaaaataactttttc
cccggacctacgtccggggctccaatttttgcgccataaatttaccccgg
acgtatatcgccgagcacactttaaacccccggatttttttataaactag
gcaaggttaataaattaattaaaaataaaaaaactaactttacttacctt
tctttgtctgatcaggatccatttttcagctttcggttagattttagaat
ttgattgCTGAACAAACCACGCTTGAGATTTAAGGTTCAAATACAGGCCT
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NNNNNNNNNNNNNNNNNNNNNNNNNNtctggggcgtccggggtagtctct
caaaaacaaataatacggaccccgggcacgcataaaaaaaaccccggact
gtccggggcataggcagggtcgtgtTGTACCCAGCCgattgcgtgatgcg
tgatcgggaaataatttgaggcgtgatttgggctattttcgcgatatttg
catggtgaacaatccttttttggtaaatttcatgatcgtcacgagagcaa
ggaaaatttctattaatgcattttaaacatgtaaaaactctggtgaacca
aaagaaagttgatattctatttttagTGAGAGCTACAGTgttcttcgtgt
gcacagacttgttaaaagcaaactaacttttttaaatgatcaattaggta
TCATCGTTTGAAAGAGGACTTTCttgggaacaaaaaatattgtgtctgat
atatgtttttgtatatcagggtttagatgcaattggtttgttttggtcct
AATCCGGACTCTTGAATTAGCCTCACTTTCATGCCCCCTATAAGGNNNNN
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NNNNNNNNNNNNNNNNNNNNGAACCGTTTCTTTTACAGTCTATACTATGT
ATTTGCCATTTGCTGGCTCATTGATTTTATATACCTATATGTTTGTATTG
TGTCATTATTTACTATACTGTTTTCCTgtaatcatttgttttattttcct
agtttatattcctgtacatattttgtctgtgccgtTTTCACAGTGTTTAT
TcgtcaagaactgaaaataccatgtagaCATATCTGTGTGCTTTCTACCT
ATCCTTGCCTATAGCCTTTTGTGTTTAAACTACggaaaatcttgaatttc
acTTGATAGGAAATTATTCTGTGAAATGCGTttgacttgactctcaagct
ttTTAAAGATTCTTGGGCGTGCCCGAACAGATTTTaacatttattttgaa
acttagtGCCCTGCTGGTGCTGGACGCCCGGGACTTGGTGCGTTGTTTGC
GCTACGCCACAACGCACGTAAAGATAGTGAAATATGCCTTACTGGCACTG
TGATGTGCCGTACTCTGGCTATGTGGCGTGCTGTGTACTAGCTATGTTGC
GTGCTGTACTGGCTGCGCGACGTACTCTAACGGCCGCGCAGCCTGTATAC
CTGATCGTGCAGTACATTTAGATGgtcaaatttagaaatggcccgggaaa
atgtgcgctctaCGTTGTAGGGGTttagcttctaacttttgatagcctAA
TTTTGGGGGCTAATGGCTTTTGGAGCCTTGGATGACGAGCAgtcatatta
aaaaaaaatcctttctgattggatgaaaggactttaggggccgtcgacat
tcgactttcgaattttttaacggcatttggccgttatggttctgaccccc
tcccccctctcTACTTTAACGGCCATCAAAttctctaaagttaaaaaatt
gtcaaaaatcgatgaaactctaaattttctccttcactttcatcgttgtt
tttttgtcagccatctttaatatcGCTACGGCTTcgctcagtttacattt
taaaaataacggagataatttctaaacttttttccgaaagttgggggaat
taattatctccgtaatcATACTCAAAAGAATAGcggcatttcaaagaaaa
aaggcCGACCATTtgcgaaattcaagggccgcgCGGACCGTCTGAACAAA
AGGAACACGAGACATAAACATTGGctcgtttgttttggttaaaatttttc
taaaaaatagcgAAGTGAATACTTTAGGTATGCGACTTTTTAGCAGATCT
TAGTtgataaaaggaggaaaaggaatatgaaaagtaacatttgtatggaa
taaacgtctcaaaaatcaatattttctggtgaaaagaattgatatgtggt
gagttgacccctaaagagattttcgaccttcccttaacggcacatggtca
accccctcccccccttaacggccaaatgccgttaaaaaattcgaaagtcg
aatgtcgacggcccctaCCTTCATCTAATATGAtacttcttttttaaata
attgctatcaattttttgattggacaaaataaaacaaatgatatcGCCAT
GATTGGATAACAAAATATCTGAGACCTTCAAGAAAGCCTAGTAGGCGTAA
AGCTAAAGGCCCAGCCAGTGGTGGTAGTGTCGACATATTTTTCTGTTGCA
GAGTCGCacgggggcactcatatggtccaaccccttaagggtaggttttc
gAGACCCTTGAAATGCACTATAAAGGTGTGTTTAGGGACTGCTAAATTGC
AAGTCTGACAGTATAAATATTTGATGTATTNGGCTGTACTTTTGGtagag
tgcactacaagggtcttcttttaggTGGATACAATATATATAAAGGTGTT
TTTAGGGACTGCTAAATTGCAAGTCTGACAGTATAAATATAcgatgtatc
tttatagttttgactcgcactcattttgatctgttttgcATATTGCGTCG
ACATCTCAGTTTCATTTTTgggcgatttttgaaaaataagatatGCAATC
AAACTAGGTGAGGGTTTTCACTGCTCAAGAGCTGTACTGTAAGCTCAAAT
AGTTTCCAAACAGCCTTAAAGATCGAAGCTAGTAAggggtcttcgacaaa
aaactttcgaattttttatctttagcttcagacagttagtcacactagga
aatttagctttcagaaaaaacaacatcagtcatctacaggatacatttca
acaacaaggatgagagttacctgaatcaagttcgcaagacaatattaatt
aaaacttgaaagttggaaacaaaataaagcgtgcagcagccaaaatcaac
caaccaaaatttcccattcaattcccgagacagcgcttcgattttttaag
gccttgtttatacgctaaggtaaaaacaattccgcacatgtaaatgggtc
attgtttgaggtccggcacaATTTCcaggagatagcctatccggcggtgc
gcggatctaggtgggttccgcctccctcGTAGATCTTTtacttgggaagt
tgatcttcaaattagttttcaaggttggcttggctcaaattttttcattt
atggctcaaattttaggcaatctctcaaagtttttgaaaatgtaaatttc
attaaaaagcgccgggttattttttcatgaatccctttagaagttttgca
gcgcatttttttgcttgagagtcaagtaaacgataaagcgttttcgcagc
attaatctttgatactcattttggcgggacgctagtgtgactaactgtca
gaccccctcccccttgctcttatcggccaaaattttcgaaagcaattttt
acatcttcgaaaacacaattttttccaatcatGTCCGCCATCGCGTTGAT
CTTGCCTCCCCACCCGTCTTCGTTGAGTTTTTGTCTAAttgcaccaacat
tgagtttgtaATAGCATACagtacatattttttataagaaccagtagcGG
TGTTGCTCGCATCCctcagatccttggttagaaaaagctatacctgttta
cttttttcttgccagattcaacaagccatcaaccaacaaaattaatacta
ggggggggggtcagtgtaccagaaggtggcatgtatcctggggggggtgg
gtgtttgagaaaaaaatttgtcatgtactacctgtgtactaNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCtcagaaatt
atctgctaaaatagaaatgtaaagttgttctattataaattgatcaagcc
aagtttgtccaagatcattcttccaaacttcttggaatgaacgttgttac
taaaagaggtaacgagtggtaacgagtggtaacgagtggtaacgatgtgg
taacgatgtggtaacgagtggtaacgatgtggtaacgaggNNNNNNNNNN
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gttctggtgaatgtgcagcaggagttggtggttctggtgaatgttatggt
ggagttgatgattctggtgcatataatgctggtgttgatggatctgatga
atgtgcagcaggagttggtggttctggtgaatgtacagcaggagttggtg
gttctggtgaatgtgcagcaggaattggtggttctggtgaatgtacagca
ggagttggtgattctggtgaatgtgcatcaggagttagtggttctggtga
atgtgcagcaggagttgatgcttctggtgaatgtgcagcaggagttgatg
cttctggtgaatgtgcagcaggagttggtggttctggtgaatgtgcagca
ggaattggtggttctggtgaatgtacagcaggagctggtggttctggtga
atgtgcagcaggagttggtggttctggtgaatgtacagcaggagttggtg
attctggtgaatgtgcagcaggagctggtggttctggtgaatgtgcagca
ggagttggtggttctggtgaatgtacagcaggagttggtggttctggtga
atgtgcagcaggatttggtggttctggggaatgttatggtggagttgatg
attctggggcatataatgctggtgttgatggatctgatgaatccaatggt
ggagttggtgattttggggaatgtgcagcaggagttggtgtttcgggtga
atgtgcagcaggagttgatgcttctggtgaatgtgcagcaggagttggag
GTTCTGGTGAATGGGCAGCAGGAGTTGgcggttctggtgaatgttatggt
ggagGTGATGATTCTGGTGCatataatgctggtgttgatggatctgatga
atccaatggtggagttggtgattttggtgaatgtgcagcaggagttggtg
tttcgggtgaatgtgcagcaggagttgatggttctggtgaatgtgttGGT
Taagttgatgattctggtgaatttgatggttgcattgatggttctggtta
atgtgctgcaggatttgatggttctggtgaatgtgatggttaagttgatg
attctggtgaatttgatggtggcattgatggTTGTGGTACGTGCTGTAGG
AGTTGATAGTTTTGGTGAATTTGCAGGAGGAGTTAATATACTGATAAATT
GTTATTGAGATGTTATTCATGGATGTAATAATAACACGTTCATTAACTAG
CGAAAAATTTCAGATTCACCATAACTGTATTTTCATTACATCCATGAATG
ACATCTCAAtaacaatttatcaaaatatttatgCAAATTCAGCAGAACTA
TCAACTCCTACAACCATTCATCACAACcttcaatgccaccatcaaattca
ccagaaccatcaatgccaacatcaaattcaccagaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNccacatcgttaccactcgttaccacctcgttaccactc
gttaccacatcgttaccactcgttaccactcgttaccactcgttacctct
tttagtaacaacgggAATGAATCGAAATCCTACCAGATCCCACTGAAATG
AAGGTTTATcgagtcaatgtaaacattcgaaaacatcagaggtgccaact
ctcacgcatggGGTGTGAGACTCACGCATTTCCACATGgtttcacgcaat
ttttgaaaagtttgatttctcacgccttttggatttttgagaaaaattct
cctgtttttccgatttttgtaaaaacgttttcccgatttcccgatttccc
gagattccgaaaaaaaatgtccccgatttcccgatttttgtaaaaatgtt
tacccaattttctgattttttccagGTAGCACCCAGTAGTAAATGgaggg
tatggggtggtttggGTTTTTTTCCAGGCACTACCCGGTAGTAaataggg
ggtatggggtggtttttggatttttccatgtagtatggtgtacttcaggg
gtggatgggtgtcaagttttgaaaaataccttgtagtacaTATACATGCC
GCctagtacactgaccccccctgtTAATACTGACATCAAAAATCACACGA
CCTTTCCACTAGACACTTCTAAATTATCTGCCATTATGAagatgttccga
aattaaccaatcgggtttacaatcggaattcctctgggagttagcgagtc
gggaaatgtaaagttaCGTAATAGGTAATACATAATTTTCCAGGGGTTAT
TAAACgtataataaataaaattgaaatggtttgttttttcttcattatat
atttaagtttccattatcaaaattctagaaatgctaGTTTATGGACCATA
TTAGAAAATTGttatatatttcgcaaaataaacacttacaaaagctatta
ctttttactatttttacccccgctttttaaacagcgtcttctgtgggcgt
gatatcaggcggagacaaaacgccctcatcgtaagattctcgggtcgtct
tattgtttgttccttttgtctagtctgtcggtcctattgttcatgctaaa
tccaaacacgatgacgtcaatgtttggcggcatacctgaaaataaaaaca
aaaagattatcatattatttttgcatgaattacgCTACCTTATACGTCAT
TATAGAATTATACAAAACGAAAGCGAGTCTAGACCGCCCGCCTAGAGTGC
Aggccctaatattttttctctcgcggtcttcaggggaaaacgaaagtgat
cgatattcttcgaaGGAAGAATTTGCCAAACAAACCCCTAGACAAAAAGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaaaagatgtattttgaggttgggaatggatcct
gcgaagatgaaaaaattttgactaggcgtttttttggcaaagccaaaaac
tctaatttttttcttccctcaagttaaaaaggttacgggttttgggcaat
cgaggcaaaaatcagtaaaaagctggtgttttctgTAAATCTGAGAATTG
TGATAAGATCCTCACTGAGTAGATTTATGGCAAggcttggctgttcttat
tttttggcactttgagcctggaATGGTTCTTATCCTGTTATTATAATAGG
GTGAAATGTAGGTATTTTAGGCTTTACACCTAATCTTTACTACtatgacc
cctaaattgcttgaaattgagtattCCAACATTTAATATTGAATGAATTT
CTCTAAAATTGATATTTCTGGTGAAAACTGGTCAAAATGGTAACCAGATT
TTACAAAAGATCTCGGGTATgtgcagtagcgtggtgggttgACCAAAATT
Ggggcaaactggggaggcaatatgtgacttcccaagcgatttaaagtacc
tgaaaatcagaCCGGTCTTGGTCCGGTATTACGAGCGGTCTAGTGgcggt
caatttttttttttagatcggCCTCCAGACTTTCTAGAAATGTAATCTCT
AACGGTTGTGGCCGCTTCTAGACGTTCGTGGTCGATCGTTGGACCGGTCC
GGGCCGTTCGCTAGACCGGTCCGGGCCGCTAGTTAGTGATTTTTAGTAAC
AATTACATCAGAAAAATGTTGTAAAAGGATGTCAACCGAGCGATCGGGGC
TGGTCCCCTAAACTCGTAGCGGCCTTTTGGTAAAATTTTACCGGTCATTT
ACCGGCCCTCAAAAGACCGTCTAAAGACCGGTcccattttcaggtacttt
aaatcgcttggggagtcacatatttgcaaaagttttgattttgggGTCCC
CTATGAAAGTAGTACCAGGCTAGAAATAGTGCACAGTATGCCAAATATAT
TCGGAGTGAGGCAGCATGATTACTTTTGGCGTATTGGCGTAAGGAACAGA
TATAAAGTAAAATATTGGCGTaagtcaaagcttttcaagacGAGATGGAT
TTCGCCTGATTTCTTTATGCCAGGATTATTAAGCTTTGCCTCTCCCTTGA
CGGCCATATAACAACGTAGAGTGTAAATAGAATAAAAAGCTTATTTGGAG
CAATTTTTAAGCATGAGAAAATCAAATATCCCAGGGTTTTCGGTTTTCGG
cgtagatatcaattaaaaATAATACTAATTCGGCGTGGACTTAGCATCGT
TTCCACACTGGACTAGCACAGAAATTGATGCGCTGTCAGGTTATCCTGGC
ACTAAGAATATGCAATGTTTCTGAAGTTATTATGTTATTAATTTTGGAGT
CAAAATGGTCTGTTGCATCCTTTAGTATATCATTTTGAGAAACATAATTA
TTTGCTTCTTATcacatactttaggcgtacaaactttcgcaagcagaaac
tttcgcgattttcgagaattttggcccttttagcgaaaataaatatcttt
aaaaattctaggaagggccattcgcgaaagtttatgcttgtgaaaaatcc
ttgacaaaatagaaaaattgtaaaacttcatgctttgaataaaatgaaac
ttttatggcactttttatcctgctaaaagactaataagtcaaaggacaaa
tgtttgaagccaatccaagaagtatttgtttctctaagccattttttcat
gtgaaaattctcaattttaagtcttgattcgcgaaagtttatgctcgcga
aaaatatttttccgttaaatttgcgaaagtaaatgtcgtgaatttcacga
tttttcgtcctcgcgaaagtttctgctcgcgaaagtttgtacacctaaag
AATAAAGTCTCTTTAACTGGAACCTCTATGACACGGTTGTCTCCTTTact
caaacaagttttataGTCCCTTCAGTtcacaatgccttataaaccttact
ccgtaactcgaaatttccctAACTCCAACAATTTTGTGTTCCTTCATTGT
TTGAATTGTGGATACTCAACTGTACTAACAATAAATGTTGTGCTTTTCAG
GTTAAAATGTGAAATGAAATGAATGGGAAAATAAAAACGTAATGTTCTTA
TTGTATGTGCAAGCTGTTTCAACCTTTGCATGCTTTATTATTGGCTTTTT
GATCTCCATTCCAATTGGATCGAACCGGTCTAAACATGACGGCCAGTGTT
TACTATACGCCAATCTTGAAATTCATGGCCCTCCAGAGGATGGTTTGATT
AGCAAGAACTTGCTGCCCGGCTCAAGACTTACTTGtgatttttgcatatt
ttctgGAACTGTATCTTTGATTATTGGATTGGTGTTGTTGATAGCTACTA
TTTATACTATTCTACAAAATGGATTCAAACGATTCAACTTGACCAGATAT
ATTGGTGATcgcgaaaaaaggaaaaataagtAAGTTGTCATTTTTCACAC
TGATTCAATTGAGTGGACACATCTAAAACttgcaatgggctcttccagaa
aaaatccgtttatggggggtggaggatatattatttttttcatgaacatt
ttgatttttaaccccctggacacgggttataccagggtaaaacaaacatc
aaatcaaccccgtggacgcaaaaaattacccctggacattggaatttacc
ccctggacattgcaattttttggtattttttcaatacccctggagaattc
atcctccaccccccatgaacggattttttctggaagagcccaattaaACT
TATTCAATTTTGTTCATTTGAACCGTTGTTTATTACATTAGTCGCATATT
TCCAAGTCAGCTAACAATATCCTGCCAAAACTAACATTCTAAGATTCTTT
CTATTTCAGTAAGCCGTTGATAGGAGCTTGGATAAATTTTTGCAGTGCAG
CTGTCATGGCATTGTTGACGTTCGTCACAGCTTGTCTCATATCATCTGGC
TTTCACGAGTTCTGTGAGCAAGGTCTGAAGAATATACACAAAGCTGATCT
CGGAAAGTTTGTCTTCTTCCCAGtccaatctttctttaatttcaatattt
gcattttttgaagaaattattaaaatttgatCCTCGTATACTTTGAGTGT
GTAAGGCTGATTCAAAAGTTTTACGTAAGTATCCCCTCTTTTCATTGTTG
AAGAGCTTGCATAAAGAAACTATTTTTGGAGTTACTGATTTTAaacattt
ataatttttttcattccgATTCATTTCACAGCTGTGACCTGCTTGAAAGA
TATGTCGGTCCATTTTATAAACAGTTGACAATAGCTCAGGTAAGCTCATC
CTCCTACCAAATCCATACTTTTAACCCTccaaaaaaaaaggattggaaag
GTCGATGAGGAAGGGGGATGTTCTTAAATAGCACCAATCCAAGCACCTGA
AACAGTTTTCTATTCTCGTCTTTATCAATATTGAATTTAGCTATACGGGT
AACTAAGTCTCTCAGGGTTATTCGTACATCTTCTTCCGTGCTAATGTGTA
TAGTCTTATATGCTCGTATTCTGATTTCACGTCGAAAGCGACCAATATTG
AGAAATGATAAAAGGAGACCCATaaagtcatttttttacaaaaagttaGC
AAGTAAAGTCGGGGTAACTTCCTTCATTAGAACAGAAGAGACTCAGAACC
ACTTTTTCTAACTACAACcatcttttgtcattttttaaatagGTCAGCGC
GTGGTTGGGAGCGCTGTTTTGGATCATTTTAACGGTGACAGGTCGAATGA
ATGTCCGAAATATGCGTCCGAAACGAACCCGGTTAATGGCGGATGATGGT
GAAGACTATCAGCAGATCGAAAGTCCCACCCATTTGTGACGGAATATTCC
TTACATTGATGAAACGTAATCAAATTAACATAGTAACGCTCCTTCTTCAA
CTACTGGGTGAGCTAAATTGAGCTAAATTCAGTGCTGATTGCTGCATaac
ggtttttttttttttgaccttGCAAAAGGTCGAACAaattattatacatt
tttttgctgaagAGACAAGATTTAGCTTGTGTGACTACGGTTTTATTTTT
TGGGGTGTTCACATTTTTCCTTTCGATGATTAGGGGTTACTTTTACGTCG
ATGATTAAAAACCGTTCTCCTGCTATCATACAAGACTGTCGAACTTTGAC
AGGTGTCAAACAAACTCGGAAATTTCAGGGAACAGGCCTTTtcagaaatt
attttgagtgcaactaCTGCCTCTCTTTGAAACCGTTACCAAGGTGATTT
GATCCCTTAAGTCTTCAAGTGTTTCTGTTATGAATAGAgtaaaaattctt
ataaaatccCCTCGGATTCCGAGGTAAGcgttgttcgtgacgtaatttat
gagaAGGTCTATTGGCTATCTTTTCACAAGAACGATCTTTGAGGAGTGTT
AAATGAAACATTTCAAGCTAGGTAGAAGAATAGAAAGtagaatttatatt
tttaaacttttaaggATTAAACAAATATAAGatattttatgatttatgaA
AATTAGGATTATGTTCAGTTTATTATGAAATCGATTTTGGAGAACTTttt
gtctttatgctgacaCTGTACATATCTGTAAgtatttttaagaaagaaac
tttttcttacGGAGATTTATTTATTAAGATCTACACAAGAGTTTTTCATT
TCTCATTCATAATCATAAACATACCTTTTCGGACAAGCCCCCTTAGTGAT
AACTGCCTTACTTTGGTACAATGCCattattttgtaatttctgAAGGTAA
AACTGAGGAGTGTTGTACGGTCTTTTATGAGATACTGTAATCGATTTAAT
GGATGACGAAAGAAGAATGTTAATTTGATGCGCTTCTGTTGaggaaaatc
ataaataaaGCTTGCCGGTATTTACATTGTTCACATGTAACCTAAATACG
TAATAAGCGATCTCCGAAA

Coding sequence (CDS) from alignment at sc0000041:196237..217305+

>TCONS_00004223 ID=TCONS_00004223|Name=TCONS_00004223|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at sc0000041:196237..217305+ (Clytia hemisphaerica)
ATGTTCTTATTGTATGTGCAAGCTGTTTCAACCTTTGCATGCTTTATTAT
TGGCTTTTTGATCTCCATTCCAATTGGATCGAACCGGTCTAAACATGACG
GCCAGTGTTTACTATACGCCAATCTTGAAATTCATGGCCCTCCAGAGGAT
GGTTTGATTAGCAAGAACTTGCTGCCCGGCTCAAGACTTACTTGtgattt
ttgcatattttctgGAACTGTATCTTTGATTATTGGATTGGTGTTGTTGA
TAGCTACTATTTATACTATTCTACAAAATGGATTCAAACGATTCAACTTG
ACCAGATATATTGGTGATcgcgaaaaaaggaaaaataaTAAGCCGTTGAT
AGGAGCTTGGATAAATTTTTGCAGTGCAGCTGTCATGGCATTGTTGACGT
TCGTCACAGCTTGTCTCATATCATCTGGCTTTCACGAGTTCTGTGAGCAA
GGTCTGAAGAATATACACAAAGCTGATCTCGGAAACTGTGACCTGCTTGA
AAGATATGTCGGTCCATTTTATAAACAGTTGACAATAGCTCAGGTCAGCG
CGTGGTTGGGAGCGCTGTTTTGGATCATTTTAACGGTGACAGGTCGAATG
AATGTCCGAAATATGCGTCCGAAACGAACCCGGTTAATGGCGGATGATGG
TGAAGACTATCAGCAGATCGAAAGTCCCACCCATTTGTGAATGTTCTTAT
TGTATGTGCAAGCTGTTTCAACCTTTGCATGCTTTATTATTGGCTTTTTG
ATCTCCATTCCAATTGGATCGAACCGGTCTAAACATGACGGCCAGTGTTT
ACTATACGCCAATCTTGAAATTCATGGCCCTCCAGAGGATGGTTTGATTA
GCAAGAACTTGCTGCCCGGCTCAAGACTTACTTGtgatttttgcatattt
tctgGAACTGTATCTTTGATTATTGGATTGGTGTTGTTGATAGCTACTAT
TTATACTATTCTACAAAATGGATTCAAACGATTCAACTTGACCAGATATA
TTGGTGATcgcgaaaaaaggaaaaataaTAAGCCGTTGATAGGAGCTTGG
ATAAATTTTTGCAGTGCAGCTGTCATGGCATTGTTGACGTTCGTCACAGC
TTGTCTCATATCATCTGGCTTTCACGAGTTCTGTGAGCAAGGTCTGAAGA
ATATACACAAAGCTGATCTCGGAAACTGTGACCTGCTTGAAAGATATGTC
GGTCCATTTTATAAACAGTTGACAATAGCTCAGGTCAGCGCGTGGTTGGG
AGCGCTGTTTTGGATCATTTTAACGGTGACAGGTCGAATGAATGTCCGAA
ATATGCGTCCGAAACGAACCCGGTTAATGGCGGATGATGGTGAAGACTAT
CAGCAGATCGAAAGTCCCACCCATTTGTGAATGTTCTTATTGTATGTGCA
AGCTGTTTCAACCTTTGCATGCTTTATTATTGGCTTTTTGATCTCCATTC
CAATTGGATCGAACCGGTCTAAACATGACGGCCAGTGTTTACTATACGCC
AATCTTGAAATTCATGGCCCTCCAGAGGATGGTTTGATTAGCAAGAACTT
GCTGCCCGGCTCAAGACTTACTTGtgatttttgcatattttctgGAACTG
TATCTTTGATTATTGGATTGGTGTTGTTGATAGCTACTATTTATACTATT
CTACAAAATGGATTCAAACGATTCAACTTGACCAGATATATTGGTGATcg
cgaaaaaaggaaaaataaTAAGCCGTTGATAGGAGCTTGGATAAATTTTT
GCAGTGCAGCTGTCATGGCATTGTTGACGTTCGTCACAGCTTGTCTCATA
TCATCTGGCTTTCACGAGTTCTGTGAGCAAGGTCTGAAGAATATACACAA
AGCTGATCTCGGAAACTGTGACCTGCTTGAAAGATATGTCGGTCCATTTT
ATAAACAGTTGACAATAGCTCAGGTCAGCGCGTGGTTGGGAGCGCTGTTT
TGGATCATTTTAACGGTGACAGGTCGAATGAATGTCCGAAATATGCGTCC
GAAACGAACCCGGTTAATGGCGGATGATGGTGAAGACTATCAGCAGATCG
AAAGTCCCACCCATTTGTGAATGTTCTTATTGTATGTGCAAGCTGTTTCA
ACCTTTGCATGCTTTATTATTGGCTTTTTGATCTCCATTCCAATTGGATC
GAACCGGTCTAAACATGACGGCCAGTGTTTACTATACGCCAATCTTGAAA
TTCATGGCCCTCCAGAGGATGGTTTGATTAGCAAGAACTTGCTGCCCGGC
TCAAGACTTACTTGtgatttttgcatattttctgGAACTGTATCTTTGAT
TATTGGATTGGTGTTGTTGATAGCTACTATTTATACTATTCTACAAAATG
GATTCAAACGATTCAACTTGACCAGATATATTGGTGATcgcgaaaaaagg
aaaaataaTAAGCCGTTGATAGGAGCTTGGATAAATTTTTGCAGTGCAGC
TGTCATGGCATTGTTGACGTTCGTCACAGCTTGTCTCATATCATCTGGCT
TTCACGAGTTCTGTGAGCAAGGTCTGAAGAATATACACAAAGCTGATCTC
GGAAACTGTGACCTGCTTGAAAGATATGTCGGTCCATTTTATAAACAGTT
GACAATAGCTCAGGTCAGCGCGTGGTTGGGAGCGCTGTTTTGGATCATTT
TAACGGTGACAGGTCGAATGAATGTCCGAAATATGCGTCCGAAACGAACC
CGGTTAATGGCGGATGATGGTGAAGACTATCAGCAGATCGAAAGTCCCAC
CCATTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002352XLOC_002352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004223-exon-sc0000041-1491911889:196237..196402TCONS_00004223-exon-sc0000041-1491911889:196237..196402Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1510915933:196237..196402TCONS_00004223-exon-sc0000041-1510915933:196237..196402Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1575043694:196237..196402TCONS_00004223-exon-sc0000041-1575043694:196237..196402Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1491911889:214437..214815TCONS_00004223-exon-sc0000041-1491911889:214437..214815Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1510915933:214437..214815TCONS_00004223-exon-sc0000041-1510915933:214437..214815Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1575043694:214437..214815TCONS_00004223-exon-sc0000041-1575043694:214437..214815Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1491911889:215246..215392TCONS_00004223-exon-sc0000041-1491911889:215246..215392Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1510915933:215246..215392TCONS_00004223-exon-sc0000041-1510915933:215246..215392Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1575043694:215246..215392TCONS_00004223-exon-sc0000041-1575043694:215246..215392Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1491911889:215618..215675TCONS_00004223-exon-sc0000041-1491911889:215618..215675Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1510915933:215618..215675TCONS_00004223-exon-sc0000041-1510915933:215618..215675Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1575043694:215618..215675TCONS_00004223-exon-sc0000041-1575043694:215618..215675Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1491911889:216079..217305TCONS_00004223-exon-sc0000041-1491911889:216079..217305Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1510915933:216079..217305TCONS_00004223-exon-sc0000041-1510915933:216079..217305Clytia hemisphaericaexon
TCONS_00004223-exon-sc0000041-1575043694:216079..217305TCONS_00004223-exon-sc0000041-1575043694:216079..217305Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004223-proteinTCONS_00004223-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:196237..217305 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.68218	6.79007	2.04484	1.66348	15.6683	11.4832	18.4977	21.8576	21.171	21.3143	32.4469	17.4804	14.5067	14.2338	16.522	21.8508	20.7581	24.3026	11.0282	20.7814	26.1349	28.3814	20.2455	16.6323	33.2003	40.0905	26.4972	21.1145	27.8905	22.1474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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