TCONS_00004252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004252
Unique NameTCONS_00004252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004252 ID=TCONS_00004252|Name=TCONS_00004252|organism=Clytia hemisphaerica|type=transcript|length=624bp
tttcgttttcggacttGTGATTTCTTCAGACTTTTTCTCAGGAACCTGCA
GGAACTCATCTGTCTACAAGCTTACCCTGTACAGACACTAGAAATGATGG
AAATTAATTATTAGGCAATGGagGTTCAACAATTTCACTTCAAAGATACA
GTCTAGCACATCTCACAAGGAAGGCAGctcgaaaacaaaaaaaaatgcaa
cCAAATTAAGCAAAGttcAAAAGATAGTCCTTGGTTATTTTGGTGTAGAC
GATTTGAAGACCTTGCCTGTTAGTAGCGATCGAATTCTCATTGATGAACA
ACACCCACCTAATGAGATTATTCTGTTGAGTGAAGATGACATCAAATCGA
TAAAAGATTTACTCTCTGCTGATGCTTGGATAAAAGTATTGAAGAAAGTT
GTTGATCTCTCCGAGTCATGGAGCTGTCCAATATGTGAAACCAGCCAATA
TATTGGAATGATTGAATGTGATTTATGCAACGTCTGGTATCATATGGATT
GCGTCAAGCTGCAACAAGAAGAGGAATATTGGGTCTGCGAAAAATGCCCA
AGTCTCAGAAAAAGACCTCGCAAATAGACTAATGATAGTTCTTTATGATA
GTTTACAAAGAAAGAATAACCAGT
Run BLAST on NCBI

transcript from alignment at sc0000041:582441..586344+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004252 ID=TCONS_00004252|Name=TCONS_00004252|organism=Clytia hemisphaerica|type=transcript|length=3904bp|location=Sequence derived from alignment at sc0000041:582441..586344+ (Clytia hemisphaerica)
tttcgttttcggacttGTGATTTCTTCAGACTTTTTCTCAGGAACCTGCA
GGAACTCATCTGTCTACAAGCTTACCCTGTACAGACACTAGAAATGATGG
AAATTAATTATTAGGCAATGGaggtaattatattttttttatttagtttc
tGATTCTCTCAAAGATTTATTCCTTGTTGTATAGGTCTATGACTATGTCT
GCTGAACATACCACGAAACATAACACGACACACAGAAATGCAATGATGAC
tgacttttgactttctttttattttgaccgATCAGGATCGATCATtcggc
tattccaaaaaaaattatacaggggtattgacaatcttttttcactaacc
ccctggaaattatGGAGCGGCTAGACCCCTCTGAACAGTGAAATTTTGGG
ATAGGCAggccagacgtccgcgctcgataggatcgatcatcggaacggat
cgatggattacttaacgatccggataggggATCGAtaaaggatcgatact
caagattttttaaagcttatgattagttatcgattatttatcgatctatc
gtcgatcttttatcgatctatcgaccctatcgactcatactcgatttacg
atcgataacaaatcgattaacaatcgatgacgaatcgattaacgatcaat
gacgaatcgattaacgatcgatgacgaatcgatatactcgattgaaatac
tagctcaataatagatcaacgaaggatcgatactcaagactttttaatgg
ctgaatcttccatcgatctcctatccggatcgttaagtaatccatcgatc
acatatcgatccgtcatcgagccgttcctaTGATTGATCCTAttgagcgc
ggacgtctgggaTAGGGTCTGGAAAACAACTATTGATTTCAGTTAAGACA
GAACCCCCTGAGGACGGAGGCTGGAGGAGGACAAGAGGACGAGAACACAA
CTTATTTGTGACCGCTGccttacaacaatacaatgctgacaagttgacaa
cAAATTGAGAAGACAGTAATGCCTGAGAGATATTTATCTATCTATCCATC
GATCTGGAATGGCCTATATCCAGACGGTCAGTCTGTCAGTCAGTTGGTTg
gtccatcgatcacatatcaaTCTGAAGATTTATGAATGGTCTTGATTATT
AAATTATCTATTGATTATCAGAAGGGGTATCCAGCAGTCCATCATCGATT
GACATTGATTTGATTATCACAATTGATCATCGATCAGGAAAAAGTTATCG
ACTGTATCGAGTACTGACTGTATAAGGTTAATGTTGACATGCCTCTTCTT
ATTtcaacatccttctttatagataggtATCTGGAAATAATAGGGAAGTT
AGAATCATTTATAGTCTCCTCAACTGATTGCTTGTGCtagtttcaatcag
ctattCCGACCCTCCTATTATTcctctctaaagaaggatgtcaaaataag
aaaaggGTTGTTAACATTAGACACTTACTGTCGGAGGGAGAGTTTGGCTG
TGGCAAACTTTCAATCAAACCCATAACTATTTTTCACCAAGTAATATTTA
cttcaaaattaatttaaaaatacACCACAAAATATGTGGTGTAAATATCA
CAAAAGCACCTACTGACAAAGTATTGACGACAAATTGACATGAGTGGAGG
ACAATTgactaaaagataaaaaagaacTTACAAATACAATACAATAACTC
ACATCTCTCATTATATATTACATACAACGAGACAGCTCACTTGACAGAAA
GACAATATACATCCAACATGACAGCTTTGCATATGACAACTTTAAAAAGT
CCTATAATGAATTCCCAATAATGTCACTTTCAGGTTCAACAATTTCACTT
CAAAGATACAGTGTAagtaaatattcttaaattattattatttaacaCCA
AAAATAAGTAATTTGGAGTATTAAAGGGGCTCTTTGTGAAACTATTCGCG
ACAAGTGATAAAAAGAACAGTAGGCTGCAAATCCATTCGTGAAAAATTTG
ACTATTTATCAATGTAGGTGTAAGAAGTCATGTCAttcacacaacgttgt
ttcgacgctTTTAGAACGTTCACAACGTTGCAATCCCAGTAAGTAAAGTG
TTATACTGCGATTTTATTGcacatttcatttttctttacaGCTAGCACAT
CTCACAAGGAAGGCAGctcgaaaacaaaaaaaaatgcaacCAAATTAAGC
AAAGGTATTCATTAGAACAATATTCCCCGTATGGACAGAATTTCAATTAC
TTTTAATAAGGTCAATTCtgagttttaaaaatcattGCACATCCATCAAA
ATCAAATAAGCATCGTTCttatttcttgtcttttttgttttagttcAAAA
GATAGTCCTTGGTTATTTTGGTGTAGACGATTTGAAGACCTTGCCTGTTA
GTAGCGATCGAATTCTCATTGATGAACAACACCCACCTAATGAGATTATT
CTGTTGAGTGAAGATGACATCAAATCGATAAAAGATTTACTCTCTGCTGA
TGCTTGGATAAAAGTATTGAAGAAAGGTACGATTAATAATTCTATTCATG
AGAGTACCTCGTTTTCTCTGAACACATGAAATGCATTCCAACCCCGGGAG
CACTAGTAATGAGGTGAATTTTTCCGAAATTCAAATATTAAAACTATCCA
TATCTATTTTCAGTTGTTGATCTCTCCGAGTCATGGAGCTGTCCAATATG
TGAAACCAGCCAATATATTGGAATGATTGAATGTGATTTATGCAACGTCT
GGTATCATATGTAAGTTAAAAGCATTATACTGGGTACACATTTTtcttaa
gaaactagttttaccaagcaatCTTAAAGTTTCTTAAGAAATGGGCCTTT
TGAGCcataaatgtttcttacatgtttctgaactttttgacataaccagc
ctcagcatgtttcttagtttttactcttaggtgccaaataaacggtcccc
cccgcttgttaatttttcgaaaattttccaacccccccggaccttattag
gacccccctgtttattcattttaaagaatattttcagttggctaaaagaa
gtcacccttattttgctccaaaaagcctgattttagcctatatttacctt
atttttgggttttcataagtacaatttccaacccccccggaccttattag
gacccccccgtttattaattttaaagaatattttcagttggctaaaagaa
gtcacccttattttgctccaaaaagcctgattttagcctatatttacctt
atttttgggttttcataagtacaatttccaaccctcctggcaattaggtc
ccccccgtttattgaaatttcaaaaattttccaacccccccgtttattcg
aacccccccgtttatttaaatttcaaaaattttccatcccccccgtttat
tgaaatttcaaaaattttccaacccccccgtttattcgaacccccccgtt
tatttggcacctaagagtaggcattctgagcctcatgtttcttaaaactG
AAGTGCGTTTCTTAAAAAGAACCCAAAAACTGTTGGTATATAATTTTTAG
ACTTTTCGGTTCAGTTGTTCTCAAGTTAAGTTTTTGAAGTCAAATTTTGC
CTTTGAAAAAGCccgaaaacaaaacaaaatcaaattaaGAATCTTTAGCA
AATTTTGACACAAAATTCCTTTCCTCGTTAAAATCTTAGTTTCGCTATAC
TAATTTGAGGTCGTTGTACTGTTTGCCCATCTTCGTGCTATGATGATAAA
ATTGATAATCGATTTATTTACACAGGGATTGCGTCAAGCTGCAACAAGAA
GAGGAATATTGGGTCTGCGAAAAATGCCCAAGTCTCAGAAAAAGACCTCG
CAAATAGACTAATGATAGTTCTTTATGATAGTTTACAAAGAAAGAATAAC
CAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002360XLOC_002360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004252-exon-sc0000041-1491911889:582441..582563TCONS_00004252-exon-sc0000041-1491911889:582441..582563Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1510915933:582441..582563TCONS_00004252-exon-sc0000041-1510915933:582441..582563Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1575043694:582441..582563TCONS_00004252-exon-sc0000041-1575043694:582441..582563Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1491911889:584274..584302TCONS_00004252-exon-sc0000041-1491911889:584274..584302Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1510915933:584274..584302TCONS_00004252-exon-sc0000041-1510915933:584274..584302Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1575043694:584274..584302TCONS_00004252-exon-sc0000041-1575043694:584274..584302Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1491911889:584582..584644TCONS_00004252-exon-sc0000041-1491911889:584582..584644Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1510915933:584582..584644TCONS_00004252-exon-sc0000041-1510915933:584582..584644Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1575043694:584582..584644TCONS_00004252-exon-sc0000041-1575043694:584582..584644Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1491911889:584784..584966TCONS_00004252-exon-sc0000041-1491911889:584784..584966Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1510915933:584784..584966TCONS_00004252-exon-sc0000041-1510915933:584784..584966Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1575043694:584784..584966TCONS_00004252-exon-sc0000041-1575043694:584784..584966Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1491911889:585104..585200TCONS_00004252-exon-sc0000041-1491911889:585104..585200Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1510915933:585104..585200TCONS_00004252-exon-sc0000041-1510915933:585104..585200Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1575043694:585104..585200TCONS_00004252-exon-sc0000041-1575043694:585104..585200Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1491911889:586216..586344TCONS_00004252-exon-sc0000041-1491911889:586216..586344Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1510915933:586216..586344TCONS_00004252-exon-sc0000041-1510915933:586216..586344Clytia hemisphaericaexon
TCONS_00004252-exon-sc0000041-1575043694:586216..586344TCONS_00004252-exon-sc0000041-1575043694:586216..586344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:582441..586344 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.989341	2.42582	0	0	4.6438	2.5513	3.6836	0.000233542	6.04954	4.85817	5.91003	2.2195	5.34859	1.68992	3.98827	2.83106	0	3.00754	5.82217	2.12536	1.08585e-05	0	0.287171	3.15416	0	0	0.986798	3.13293	0	0.694119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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