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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004277 ID=TCONS_00004277|Name=TCONS_00004277|organism=Clytia hemisphaerica|type=transcript|length=632bp
CATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGCCGT
TCTTATTGCTGCATGTTACGCCAGAGAGCCATGTCCAAACTCACTCTGCA
AATGGAGAGAAGATGGATTCTCCGCCCGAGTCAGTAATGATCATCCAGGA
TTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCCAGC
CAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTTCAACCAAAGAAGA
CATCCACAACCACCACCACCACTACCACAACTACGACCACCACGACACCA
CCACCACCAAAATGTCCACAAAGCTTATGCAACTGGCAACCCGTTGGAGC
TTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTTCAATGCGCCAACA
CTGGAGCTGTTTGCAGAAAGTGTCCAGACGGTCTTGTCTTCAGAAATGGA
ATCGATGTTTGCGTCCGTCCTCCAATCTCAAAACATGGCAAAAAACATTA
AACGTCGACGATTTCGCCGAACTCCCTCAACTCCTCTCTCTCTTGTCtct
ttgtaaattttgataTACATGTATATTATTTCTttgttagtttttgtttt
tgatcaaaTATATATTTCTGcataaataaaag Run BLAST on NCBI transcript from alignment at sc0000041:311324..319533- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004277 ID=TCONS_00004277|Name=TCONS_00004277|organism=Clytia hemisphaerica|type=transcript|length=8210bp|location=Sequence derived from alignment at sc0000041:311324..319533- (Clytia hemisphaerica)
CATCGGATAAACATCAACAAAATCAAAATGAAGATTTTCATCGCCGCCGT
TCTTATTGCTGGTAAGTTTCTTTAGTGAAACCAAAGATTCCTGATTCTTA
CAAAATGATGGTTCTGTCAATGTATAAACAAAACAAAAGTTCTGCATTTC
ACCATCCCCAAAATGTACTGATGTTTTGCATACTTTTTCTTTTTAGCATG
CTACGCCGCAGAACCATGTCCAAACTCACTCTGCAAATGGAGAGAAGATG
GATTTTCCGCCCGAGTCAGTGATGATCATCCAGGATTTTTCTTCCAATGT
TCCAACTGGATCGCTTATTGTTTCGATTGCCCAGCCAACACAGTTTTCGA
TAACCACTTGAGAGTTTGTGTCAACCGAAAGACCACTACCACTACCACTA
CAACTACTACCACCACTACCACCACCACACCCCCACCACCAAAATGTACG
TTCAATGTAGTTTCCTTTTATTTCTTACTGCTAACTCTAACCAATATACC
TTTCAAATACATTAGCTCCCTTTTTTCTAGCACTTATATTTATTGCACTT
AAGCCACTGAATCCGAGGATGACTTTTTGATTATTTTCTAAACCGATATC
CTTAACATTCCAGGTCCTAAAAGCTTGTGTAATTGGCAACCCGTTGGAGC
TTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTTCAATGCGCCAACA
CTGGGGCTGTTTGCAGAAAGTGTCCAGACGGTCTTGTCTTCAGAAATGGA
GTCGATGTTTGCGTCCGTCCTCCAGTCTCAAAACATGGCAAAAAACATTA
AATGTCAATGATGTCGCCGAGCTCCCTCAACTCCTCTCTCTTGCATCTTT
GTAAATTTTGATATACATTTATATTTCTTTGTTAGTTTTTTGTTTTTGAT
CAAATATATATTTCTGAACAATGAAAGTAATCCTGTGTGTTGAAGATTTA
TTTTTCGATATGGGAAATAACATATGGGGGACCTAATTACCGGGGTCAAT
AACAACAGGGTAATTATACCGAAGCCTGGACATTTAAATCCAAATAAGGA
ACTCTTCTTTTCAAAAAATAGTAACAAGGTTTAGGGGGGTGTAGGAAAAA
ATCGAAATATTAACAAGCAGGGGTCGTTTATTAGGCACCTGAGAGTGACC
GGTTTATTGCAACTGCTATGCTACTAAGGGTCAAATAATGAACAAACAAT
ACTTCCTAAGAAATTCTCCGCTGCCAAAATGCATCCTGCAAAATGCTTTC
TTTCAGAAACTTCTAAAAGAGTTAAAAGCTTCACGAAGCCTGTATAGATA
AGCTAAATGGAAAGTCAAAGTTATACGAAAGAATCAGTAACTTTTTGTGA
TCAAGAAGCTGTTTTCAAATAAATCTCGTGTCCTTTTTAGTTTCATGGAG
TTGTTCAGAGGAAAAATAATTTTCAAGTCATATCAAACGTAGCCTTAGAA
AATTTATTTAAAACCAGAGAGGATTACCTGAATCTTGTTTTACTTTGGAA
GTCACCGTTGTGTGTCACCTTTATCGGTCCATAAAATACTATATCCATTT
GTATTAATTGACCTGTGAAAAAAGGGAAGAATGAAAAAACAAACATAACA
AACTAGAAAGCTGAATGACGCTACCTGATATGATTGAAGTTTGACGAGTT
TGACTAAGTAAAGTAAGCAAAGCAAAAACAGTTTAAAGCAAGCAGATCCA
GAAAAATAATTTAGCGAACGAACGATTGAACACACAAAAAGCCCGTGCGA
TTAAATCTGTAAATATAAAATGATTTTCTTTTTACAAAGTGACATCTGTA
TGGAAATTTTGAAAATTTTCCAATTGCCACTATGAACTTTAAGGAAATTT
AAGAACAGTACTTCTGATAATAACGGGTGATAACGGGTTCTTTCGGCGGT
TTTGAAAACCCAGCTGGCACACAACGTTGTTTCAACGTTTATCTAACGTT
CACAACGTCCATACAACGTTAGATGAACGTTCAAAATATTGTGTCCAGCT
ATGGCTCAATATATTCACAACTGCTACCACCGCCCATCAAGACTTTTCCT
AATGGGAGGAAAGGAGATTGCATCGCAAGAAGNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTAGATGAACGTTATGAACGTTGTTACA
ACGTTGTGTGCCAGCTGGGAAGTTCATTCTCAAAATCAGTTTTTTTTGGA
AATCAACATTGGCTGGCAGATCTCAAGTATTACAGGTCAAAGGGTGTATT
TAAATTTACACTGAAAGTTTCAAGCTAATGGCCTTAACGTGTCCAAATCA
TATATGTTGTTACTGATGTACGTAAAACGTTTAAGCGAAAGTAATAATTG
CGTTTGTTTCTTTGACGTAGGTTCGAAGCAGCTCAAAATGTTGCAGCAAT
GATTTTAAAATTACCAAACGGTTCAAAATACAACAAATTCACGTTGATTC
ACACACTTCAAGGATTGCTTTCTCGGTATGATAAAACTATTGTTTTACCA
TATCAACACAAAATCATGGTTTTGGCATGATGAAGTTTGCTTGAAATACG
ATCACGCAATCGTGCAAAGTTAGATAATAAGAGCCAAAGGAGAAGATCGT
GCAGTTCCTTGTCCCATATTTTCAAGCAACTTTTAAACTACAGTGTGAAT
ACACCCAAAATCCTACTTAAATTTAGTAGCACCCCTTACATACCCAGTTA
TCAAGATATTACATTTAGTTTAATGACAATTCAAGAAAACAGTTTCTCCG
GCGATCTTGAAGTCTGACTCTAAAAATCAGTTTTGCTGGAAATGAAACGC
TGCAGGCAAATCTCAAGTATCGTAGATAAAAATCCTGTTTAAATCTAGTA
GCTCCCCTTTAATGTGCCAGATATTACATTTAGTTTAATGAAAAGTAGAT
CGAATTAATCTACTATGTGGGTTTCAAATATATTAACCGGTAATTNCCCC
TTTAATGTCCCAGATATTGCATTTAGTTTAATGGCAAGTAGATCGAATTA
ATCTACTATGTGGGTTTCAAATATATTAACCGGTAATTTCCGGTTACGAT
TGTTAAGATCTAAGAATGTAGACCTCGAATTAAAAAATATTAGTTGTTTT
CCATTTTAATTGCCTTAATCGCAAGAAGAACGTGGAACGCTGCGCTGGTA
ACATCTTTCGATGTAACATGGCATGGACCAGGGGTTTAGGTACCCCCTAA
GAAAATAGGTACCCTCTGAATTTTAGGTACCCCCAAACAACAGACGTTAG
TAGGTACCCCNCACGTGAAGTTAATCGCAAAAAAGTTTTCCTGTGGGAGA
AGAGGGAATACTTTCTTCAATGAACTTTTCTCCTTAAATCTTAACAATCG
CAAAAAAGATTGTTTGGAATGATCAACAACAAAATTATTCCTATTATTGA
GCATGCTACATATTAGAGGCCCCTCAAGCGGTTGTTAAGCGATGTCGTGA
TGGGGAATTTTTTTCTGCGTGATTTCGCATAGACAGGGTTCAGACAGACC
TTCGAAAATAAAATCTCCTGAGTTTCCCTGAATTTTAATCAATTTTCAAA
GGTTTTTTCCCTGAGAAATTCCTCATTTTAGCTATTTTTTCCCTATTTTT
TCCCTGAGTATCAAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGCAGACTGGGAAAAAAAAATTTTTTCCCTGGGTTTCCC
TGAGTTTCCCTGATTTTTCTGAAAATTTATCATATTTCCAGGTTTTCCAG
GGTCTGTCTGAACCCTGCATAGATTAAACTTATTCTTCACGAAGATTTAA
AATCCCAAAATTGGCCAAAACCCCTAGAAAAATGAAAGAAAAAGAGGCCG
ATTCGCGAAATTTAATCCACACGAAAATATTTATGATTCCTAAATTGCGA
AAAAGTCGACACAGGGATTAATCCACTTGAGGTAGGAACAATTTTTCATC
TACTGACTGGAATATTTCATTGATGAAAAATTGTTCTTAATGCAAAGAAT
ATTGACCCCTTTTCAAGATTTCTGCGTCATAATTGTTTAGTGGTAAGGAA
GCGATCAGAAAAGAATTTGAGTGGTGGTTGATATCACTATGACAACTAAT
AGAAAACACCAAGCCTTCACTGATGCCCAGTTGACCAAAGGAATTTTAGA
TTTACCCTACATAATAATCATTTCAAAATTTGTAACCACGGGTGCCTACT
CTGGCAATTAAGTCAGAGAGACCAAAGGAAGTTAACAAACAAAAAGAAGG
CTAAGGAAGTATTTAAGTTGAGGTTTTAAGCTTCTCTGGTTTTTCCTATA
AATACTGAAAAATCTTTTAAAACAAGGCATCCAACATTCTAAATTGATAA
AAATCCAAAGAGATTCAGTCAATCAGATACCAAATCACAAAAATGAAGAT
TTCCATCGCCGTCGTACTTATTGTTGGTAAGTTTCTCCTCGGTTTGATCA
AAGCCTCTTTAAGTTATCAAAATGAAGTTATTCTTGCCGAGATAAGCGAA
ACCTACTTCAATTGACCATATTCAAACCTAATTTCTACCTTCTTTTAGCA
TGTTACGCCAGAGAGCCATGTCCAAACTCACTCTGCAAATGGAGAGAAGA
TGGATTCTCCGCCCGAGTCAGTAATGATCATCCAGGATTTTTCTTCCAAT
GTTCCAACTGGATCGCTTATTGTTTCGATTGCCCAGCCAACACAGTTTTC
GATAACCACTTGAGAGTCTGCGTTCAACCAAAGAAGACATCCACAACCAC
CACCACCACTACCACAACTACGACCACCACGACACCACCACCACCAAAAT
GTATGTTGTGAAATCGTTTTGTTTCCTTTATTTATACAATTTAACCTTGA
CCAATATACTTTCGAATGTCATTGCGTTCTTTTCCTCAACATTGTATAGC
ATTGAAAAATCAACTGAATAGAGGATAAGCTGTCATCAAGTTATTATGAT
GTTTGTGGAATAAAACTCAAATAATATCCTAAATATTTCAGGTCCACAAA
GCTTATGCAACTGGCAACCCGTTGGAGCTTTAGTCAGCTACCCAGGAAAA
CCAACCTACTACGTTCAATGCGCCAACACTGGAGCTGTTTGCAGAAAGTG
TCCAGACGGTCTTGTCTTCAGAAATGGAATCGATGTTTGCGTCCGTCCTC
CAATCTCAAAACATGGCAAAAAACATTAAACGTCGACGATTTCGCCGAAC
TCCCTCAACTCCTCTCTCTCTTGTCTCTTTGTAAATTTTGATATACATGT
ATATTATTTCTTTGTTAGTTTTTGTTTTTGATCAAATATATATTTCTGCA
TAAATAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004277-exon-sc0000041-1575043694:319473..319533 | TCONS_00004277-exon-sc0000041-1575043694:319473..319533 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1575043694:311834..312085 | TCONS_00004277-exon-sc0000041-1575043694:311834..312085 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1575043694:311324..311642 | TCONS_00004277-exon-sc0000041-1575043694:311324..311642 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1510915933:319473..319533 | TCONS_00004277-exon-sc0000041-1510915933:319473..319533 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1510915933:311834..312085 | TCONS_00004277-exon-sc0000041-1510915933:311834..312085 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1510915933:311324..311642 | TCONS_00004277-exon-sc0000041-1510915933:311324..311642 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1491911889:319473..319533 | TCONS_00004277-exon-sc0000041-1491911889:319473..319533 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1491911889:311834..312085 | TCONS_00004277-exon-sc0000041-1491911889:311834..312085 | Clytia hemisphaerica | exon |
| TCONS_00004277-exon-sc0000041-1491911889:311324..311642 | TCONS_00004277-exon-sc0000041-1491911889:311324..311642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:311324..319533 - |
Blast
The following BLAST results are available for this feature:
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