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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004292 ID=TCONS_00004292|Name=TCONS_00004292|organism=Clytia hemisphaerica|type=transcript|length=1271bp
tttttctaaaatcttaataaattcaaatatttttacaagtGCGTATAACA
TAATTCGATTTATTTAAATGAACATGGTTTTTTAaggttcaaatttttct
tcttccatGCAGGGCTTCATTTCTTCGACTTCGCCCGTGGACGAAATTGT
AGAAGAAATTTTCTCACTTTTCAACGCAAACTTCGAATGGAGATAAGTGA
ACTTCTTGTGAATCCGCTCACGGAAAATATAAATCATAGGGTCCGCAAGC
GACCGAGAAATCAAAAGTATGAATAACAAAGACCCAATTACACTACCACT
GTAAGGTGTAAATGATTGTTCGTAGTGTGTCAGGTACCATATGACGGAAG
GCATGGTACTCACCACGTATGAGATCACGATACTGAAACAAAAAGCCGTC
ACTTTATTCTGCTGTTCTTTTTGTTCCTTAGAATACCACAATGATGCTGA
CGGTTGCCCTGGCGACAATTTACTCTTGTGTTTTGATTGATTGGAGCAAC
GAATATGAAAAATGATGTAAGAATACACACACGTGATGACGACATTGGAA
ACCAATAGTAACGAGAATAACACGATCAAGAACAGGTTGAAATTGTAGCG
AATCGTAAGAGCTGGTAGCACGCTCAATAACCAAACAATAATTGAGGTTG
CAATAACGAATTTCGGATTAATCTCCTTATATTTGAATGGAAATTTCACT
GCAATGAATCTCTCCAAGGTTAGCATGCCAATGTGAATTAATGACGTAAT
CAAACCAAAACCAATCATGTAAGCGCCTGCCCAAAGTTCCTGACCGTTAA
CATAACATGCAGAATCTGCTAAGACACCGACTCCTAATAAGACGTTTGCG
ACACAAAGACTTGTCAGAATCATTTCATTCCGTTTGGCGCCTGtagaata
cttttgatgattctGCATCTTTTTACGTTGCTTAGTAACGATGAATATGA
GGGCCATTATGTTGAGGATGACGACACAGGAGGCTGTTATGAACATGAGG
ATGACGCAAGCTTTGTAGCCATCCTTCGTCTGGTGGAAGGAGACCAATGA
CATTTCTGGCAAGTCTTTTTTGTTCATTTAAGGCTctgtttttattactt
tttcctattgataaaaattttttgaaacacgCAGAAGTTAAAACCATTGa
gtttgagtttaaagcctgacgggctagagtagaatctctaacctttctaa
gacaaaaaaaaagtaaagtcacttatttcccatccagaaacTCGCCCTTC
GTGATTGGAAGTCAATAAAAC Run BLAST on NCBI transcript from alignment at sc0000041:411576..412914- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004292 ID=TCONS_00004292|Name=TCONS_00004292|organism=Clytia hemisphaerica|type=transcript|length=1339bp|location=Sequence derived from alignment at sc0000041:411576..412914- (Clytia hemisphaerica)
TTTTTCTAAAATCTTAATAAATTCAAATATTTTTACAAGTGCGTATAACA
TAATTCGATTTATTTAAATGAACATGGTTTTTTAAGGTTCAAATTTTTCT
TCTTCCATGCAGGGCTTCATTTCTTCGACTTCGCCCGTGGACGAAATTGT
AGAAGAAATTTTCTCACTTTTCAACGCAAACTTCGAATGGAGATAAGTGA
ACTTCTTGTGAATCCGCTCACGGAAAATATAAATCATAGGGTCCGCAAGC
GACCGAGAAATCAAAAGTATGAATAACAAAGACCCAATTACACTACCACT
GTAAGGTGTAAATGATTGTTCGTAGTGTGTCAAGTACCATATGACGGAAG
GCATCNTACACTACCACTGTAAGGTGTAAATGATTGTTCGTAGTGTGTCA
GGTACCATATGACGGAAGGCATGGTACTCACCACGTATGAGATCACGATA
CTGAAACAAAAAGCCGTCACTTTATTCTGCTGTTCTTTTTGTTCCTTAGA
ATACCACAATGATGCTGACGGTTGCCCTGGCGACAATTTACTCTTGTGTT
TTGATTGATTGGAGCAACGAATATGAAAAATGATGTAAGAATACACACAC
GTGATGACGACATTGGAAACCAATAGTAACGAGAATAACACGATCAAGAA
CAGGTTGAAATTGTAGCGAATCGTAAGAGCTGGTAGCACGCTCAATAACC
AAACAATAATTGAGGTTGCAATAACGAATTTCGGATTAATCTCCTTATAT
TTGAATGGAAATTTCACTGCAATGAATCTCTCCAAGGTTAGCATGCCAAT
GTGAATTAATGACGTAATCAAACCAAAACCAATCATGTAAGCGCCTGCCC
AAAGTTCCTGACCGTTAACATAACATGCAGAATCTGCTAAGACACCGACT
CCTAATAAGACGTTTGCGACACAAAGACTTGTCAGAATCATTTCATTCCG
TTTGGCGCCTGTAGAATACTTTTGATGATTCTGCATCTTTTTACGTTGCT
TAGTAACGATGAATATGAGGGCCATTATGTTGAGGATGACGACACAGGAG
GCTGTTATGAACATGAGGATGACGCAAGCTTTGTAGCCATCCTTCGTCTG
GTGGAAGGAGACCAATGACATTTCTGGCAAGTCTTTTTTGTTCATTTAAG
GCTCTGTTTTTATTACTTTTTCCTATTGATAAAAATTTTTTGAAACACGC
AGAAGTTAAAACCATTGAGTTTGAGTTTAAAGCCTGACGGGCTAGAGTAG
AATCTCTAACCTTTCTAAGACAAAAAAAAAGTAAAGTCACTTATTTCCCA
TCCAGAAACTCGCCCTTCGTGATTGGAAGTCAATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004292-exon-sc0000041-1575043694:412610..412914 | TCONS_00004292-exon-sc0000041-1575043694:412610..412914 | Clytia hemisphaerica | exon |
| TCONS_00004292-exon-sc0000041-1575043694:411576..412541 | TCONS_00004292-exon-sc0000041-1575043694:411576..412541 | Clytia hemisphaerica | exon |
| TCONS_00004292-exon-sc0000041-1510915933:412610..412914 | TCONS_00004292-exon-sc0000041-1510915933:412610..412914 | Clytia hemisphaerica | exon |
| TCONS_00004292-exon-sc0000041-1510915933:411576..412541 | TCONS_00004292-exon-sc0000041-1510915933:411576..412541 | Clytia hemisphaerica | exon |
| TCONS_00004292-exon-sc0000041-1491911889:412610..412914 | TCONS_00004292-exon-sc0000041-1491911889:412610..412914 | Clytia hemisphaerica | exon |
| TCONS_00004292-exon-sc0000041-1491911889:411576..412541 | TCONS_00004292-exon-sc0000041-1491911889:411576..412541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:411576..412914 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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