TCONS_00004323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004323
Unique NameTCONS_00004323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004323 ID=TCONS_00004323|Name=TCONS_00004323|organism=Clytia hemisphaerica|type=transcript|length=464bp
CTGAAACATGATGTTTCCAAGAGAGATTCTTGGAAATGGTTACTCCAAGG
TATTTCGCTTTATCAACTGCCTTCAAGTTTTGACCATGGATTGTATAGGT
ATGGTCAATAATTTTACGTTTGTTTGTTATGCGAAGTACATAGCATTTCC
CCGGGTGGAACTCCATTGACCATTGCTTTTCCCACTCCACTAACTTTTCA
AGGTCTGCTTGTAATGAATATGCATCATTTAGGCATTTGATTACTTTGAA
TAAGTAGGAATCGTCAGCAAACAAAGCAATATTTGAATCAACATGCAAGG
GCATATCGTTTATATAAACAAGAAACAAGAGGGGACCAAGAACTGAGCCT
TGAGGGACACCTGAAGTGACCGCTATCCGCTTTGACAGAGTTCCTCTTAC
AGCTACACATTGACTACGATTGTTCAGAAAATCCGCTATCCATTTAAGCA
AGGTTCCATGGATG
Run BLAST on NCBI

protein sequence of TCONS_00004323-protein

>TCONS_00004323-protein ID=TCONS_00004323-protein|Name=TCONS_00004323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
IHGTLLKWIADFLNNRSQCVAVRGTLSKRIAVTSGVPQGSVLGPLLFLVY
INDMPLHVDSNIALFADDSYLFKVIKCLNDAYSLQADLEKLVEWEKQWSM
EFHPGKCYVLRITNKRKIIDHTYTIHGQNLKAVDKAKYLGVTISKNLSWK
HHVS
Run BLAST on NCBI

transcript from alignment at sc0000041:277672..278135

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004323 ID=TCONS_00004323|Name=TCONS_00004323|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at sc0000041:277672..278135 (Clytia hemisphaerica)
CATCCATGGAACCTTGCTTAAATGGATAGCGGATTTTCTGAACAATCGTA
GTCAATGTGTAGCTGTAAGAGGAACTCTGTCAAAGCGGATAGCGGTCACT
TCAGGTGTCCCTCAAGGCTCAGTTCTTGGTCCCCTCTTGTTTCTTGTTTA
TATAAACGATATGCCCTTGCATGTTGATTCAAATATTGCTTTGTTTGCTG
ACGATTCCTACTTATTCAAAGTAATCAAATGCCTAAATGATGCATATTCA
TTACAAGCAGACCTTGAAAAGTTAGTGGAGTGGGAAAAGCAATGGTCAAT
GGAGTTCCACCCGGGGAAATGCTATGTACTTCGCATAACAAACAAACGTA
AAATTATTGACCATACCTATACAATCCATGGTCAAAACTTGAAGGCAGTT
GATAAAGCGAAATACCTTGGAGTAACCATTTCCAAGAATCTCTCTTGGAA
ACATCATGTTTCAG

Coding sequence (CDS) from alignment at sc0000041:277672..278135

>TCONS_00004323 ID=TCONS_00004323|Name=TCONS_00004323|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000041:277672..278135 (Clytia hemisphaerica)
ATCCATGGAACCTTGCTTAAATGGATAGCGGATTTTCTGAACAATCGTAG
TCAATGTGTAGCTGTAAGAGGAACTCTGTCAAAGCGGATAGCGGTCACTT
CAGGTGTCCCTCAAGGCTCAGTTCTTGGTCCCCTCTTGTTTCTTGTTTAT
ATAAACGATATGCCCTTGCATGTTGATTCAAATATTGCTTTGTTTGCTGA
CGATTCCTACTTATTCAAAGTAATCAAATGCCTAAATGATGCATATTCAT
TACAAGCAGACCTTGAAAAGTTAGTGGAGTGGGAAAAGCAATGGTCAATG
GAGTTCCACCCGGGGAAATGCTATGTACTTCGCATAACAAACAAACGTAA
AATTATTGACCATACCTATACAATCCATGGTCAAAACTTGAAGGCAGTTG
ATAAAGCGAAATACCTTGGAGTAACCATTTCCAAGAATCTCTCTTGGAAA
CATCATGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002403XLOC_002403Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004323-proteinTCONS_00004323-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004323-exon-sc0000041-1491911889:277672..278135TCONS_00004323-exon-sc0000041-1491911889:277672..278135Clytia hemisphaericaexon
TCONS_00004323-exon-sc0000041-1510915933:277672..278135TCONS_00004323-exon-sc0000041-1510915933:277672..278135Clytia hemisphaericaexon
TCONS_00004323-exon-sc0000041-1575043694:277672..278135TCONS_00004323-exon-sc0000041-1575043694:277672..278135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:277672..278135 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.526857	1.33248	0.829694	0.83471	0.688466	1.38495	0.566097	1.04083	0	0.422408	0.737865	0.814201	0.142013	0.232151	1.01598	0.729258	0.249355	0.537354	3.63803	0.856519	0.743208	0.5042	0.682123	1.56315	0.348778	0.607956	1.34979	1.23926	1.16679	0.865038
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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