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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004355 ID=TCONS_00004355|Name=TCONS_00004355|organism=Clytia hemisphaerica|type=transcript|length=1363bp
GTTGTGCAAAacgtgagcatatttatttttcttataagcatcatctttat
aagaatgcaatccataacttttaattcaaggggtattgactttcggcgat
tggttcattcaaagcaacttgtggtttgtgcaaaatgtgagcatatttat
ttttcttataagcaccatctttataagaatagaatcaataacttttaatt
caaggggtattgactttcggtgatgggttctttcaaagcaagttagggat
tgtgcaaaatgtgatcatatttatttttcttataagcatcatctttataa
gaatgaaatccataacttttaattcaaggggtattgactttcggcgatta
gttcattcaaagcaacttggggtttgtgcaaaatgtgagcatatatAAAA
AGAGATGCATCCTTCGAAAAGTTCATGCGTGCTAGACCACTAGCATACGC
TTTTGAAATACCAGAAAATGCTGGCAAGAAACCAAaatcgaagaagaaga
aaagaaggtCACAAAAAGAGCCAGAAATATTCATAACACAAGAAACAGCA
CCGgtgaagaaattgaaaattcaaaaaaactcaGCAGGTGTCGATGGGGC
ATGGCAGTGTACAGAGAATGAACCAGAGATGGACTTGTCTTTCCTCGACC
CATCAAGCCAAACTGTAACGGAGTATACGTTGGTCCTTCGAAGTGACAAA
AGTTGTGTCCGAAGACAGTTAAACGCTGCCAACAATGCCGCAAAgatttt
tcatcaaaagattTATTGGTAATAAAGAGCTTTGGTGATCGTGGGGAGTA
TCAAAACACCAATGGCCAATTTGTCCAAACTGAAGGGAACATTTTATATG
CATTTCAAGACGAAATGTTTAACGGCTCATGATgcgaatttcaaatttga
aagtgTGGTGGTCCCTGAAAGAAGCCTTGAAAGGATTCCAGAAGAATGGA
AGCCGACCTTGATAAATTCGGGGATCAAGCTCTAAGAACTTAAATGAACC
AAATCGGTTACTCTTTACGATATTGACATTTTTGCAAACATTTGACCGAT
TTTGTCTTGATTAGTATCGTATAATCTTATGTTCATTTTAATTATTGTTG
TTTCTACCGGAAAAGTATTGCTGCAAACTACTGCTCACAAGTGAACGaca
tttgatatcttttgatattatttcCTCTTATTATGAAGGTCGCGACAATT
TCAGAGTACACAAAGAATCACCtcaattattcttattttattagaacacg
GACCAGATCGTCACTCAGTTCTTacgttctttattttcatattcTTTAGT
ATTTATCTCTAGGATAGTAATAGCTATTGATGAGAAAATATCTCTGCTAT
ATTCTAAAATCAG Run BLAST on NCBI protein sequence of TCONS_00004355-protein >TCONS_00004355-protein ID=TCONS_00004355-protein|Name=TCONS_00004355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MRARPLAYAFEIPENAGKKPKSKKKKRRSQKEPEIFITQETAPVKKLKIQ
KNSAGVDGAWQCTENEPEMDLSFLDPSSQTVTEYTLVLRSDKSCVRRQLN
AANNAAKIFHQKIYW Run BLAST on NCBI transcript from alignment at sc0000044:97865..99618+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004355 ID=TCONS_00004355|Name=TCONS_00004355|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0000044:97865..99618+ (Clytia hemisphaerica)
GTTGTGCAAAacgtgagcatatttatttttcttataagcatcatctttat
aagaatgcaatccataacttttaattcaaggggtattgactttcggcgat
tggttcattcaaagcaacttgtggtttgtgcaaaatgtgagcatatttat
ttttcttataagcaccatctttataagaatagaatcaataacttttaatt
caaggggtattgactttcggtgatgggttctttcaaagcaagttagggat
tgtgcaaaatgtgatcatatttatttttcttataagcatcatctttataa
gaatgaaatccataacttttaattcaaggggtattgactttcggcgatta
gttcattcaaagcaacttggggtttgtgcaaaatgtgagcatatatAAAA
AGAGATGCATCCTTCGAAAAGTTCATGCGTGCTAGACCACTAGCATACGC
TTTTGAAATACCAGAAAATGCTGGCAAGAAACCAAaatcgaagaagaaga
aaagaaggtCACAAAAAGAGCCAGAAATATTCATAACACAAGAAACAGCA
CCGgtgaagaaattgaaaattcaaaaaaactcaGCAGGTGTCGATGGGGC
ATGGCAGGTAACTCAATTTTGTATGCATACTCAGAAATTCTACAGTTTTT
TTTCTGCAGTTCAAATAGTCTCACAAGGGCGTGTGCGGGTAAAAGTTTGC
GGGCTACACGTCATTTCTATAAACATAACTAAGCACTTGTCTGCGctaaa
taccttaagggaatagaagtttttgcgggaatttaattcCGCGGATTggc
aattttgtaaattttcgcgggaatttaatttagcggattGGCGTAATTTT
CATcctgcgaaaatttctttcctcAAGGTATTGgcgaaaattgttcaaaa
taagGTTGGGGTATCCTGAGAGTATTTCTTATTCATACAGTTGAATCAGC
GTCCTTGGTTGAATTAAAAATAACCTTGCAAACGAACTTTTGTTTTAGTG
TACAGAGAATGAACCAGAGATGGACTTGTCTTTCCTCGACCCATCAAGCC
AAACTGTAACGGAGTATACGTTGGTCCTTCGAAGTGACAAAAGTTGTGTC
CGAAGACAGTTAAACGCTGCCAACAATGCCGCAAAgatttttcatcaaaa
gattTATTGGTAATAAAGAGCTTTGGTGATCGTGGGGAGTATCAAAACAC
CAATGGCCAATTTGTCCAAACTGAAGGGAACATTTTATATGCATTTCAAG
ACGAAATGTTTAACGGCTCATGATgcgaatttcaaatttgaaagtgTGGT
GGTCCCTGAAAGAAGCCTTGAAAGGATTCCAGAAGAATGGAAGCCGACCT
TGATAAATTCGGGGATCAAGCTCTAAGAACTTAAATGAACCAAATCGGTT
ACTCTTTACGATATTGACATTTTTGCAAACATTTGACCGATTTTGTCTTG
ATTAGTATCGTATAATCTTATGTTCATTTTAATTATTGTTGTTTCTACCG
GAAAAGTATTGCTGCAAACTACTGCTCACAAGTGAACGacatttgatatc
ttttgatattatttcCTCTTATTATGAAGGTCGCGACAATTTCAGAGTAC
ACAAAGAATCACCtcaattattcttattttattagaacacgGACCAGATC
GTCACTCAGTTCTTacgttctttattttcatattcTTTAGTATTTATCTC
TAGGATAGTAATAGCTATTGATGAGAAAATATCTCTGCTATATTCTAAAA
TCAG Coding sequence (CDS) from alignment at sc0000044:97865..99618+ >TCONS_00004355 ID=TCONS_00004355|Name=TCONS_00004355|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000044:97865..99618+ (Clytia hemisphaerica)
ATGCGTGCTAGACCACTAGCATACGCTTTTGAAATACCAGAAAATGCTGG
CAAGAAACCAAaatcgaagaagaagaaaagaaggtCACAAAAAGAGCCAG
AAATATTCATAACACAAGAAACAGCACCGgtgaagaaattgaaaattcaa
aaaaactcaGCAGGTGTCGATGGGGCATGGCAGTGTACAGAGAATGAACC
AGAGATGGACTTGTCTTTCCTCGACCCATCAAGCCAAACTGTAACGGAGT
ATACGTTGGTCCTTCGAAGTGACAAAAGTTGTGTCCGAAGACAGTTAAAC
GCTGCCAACAATGCCGCAAAgatttttcatcaaaagattTATTGGTAAAT
GCGTGCTAGACCACTAGCATACGCTTTTGAAATACCAGAAAATGCTGGCA
AGAAACCAAaatcgaagaagaagaaaagaaggtCACAAAAAGAGCCAGAA
ATATTCATAACACAAGAAACAGCACCGgtgaagaaattgaaaattcaaaa
aaactcaGCAGGTGTCGATGGGGCATGGCAGTGTACAGAGAATGAACCAG
AGATGGACTTGTCTTTCCTCGACCCATCAAGCCAAACTGTAACGGAGTAT
ACGTTGGTCCTTCGAAGTGACAAAAGTTGTGTCCGAAGACAGTTAAACGC
TGCCAACAATGCCGCAAAgatttttcatcaaaagattTATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004355-exon-sc0000044-1491911889:97865..98471 | TCONS_00004355-exon-sc0000044-1491911889:97865..98471 | Clytia hemisphaerica | exon |
| TCONS_00004355-exon-sc0000044-1510915933:97865..98471 | TCONS_00004355-exon-sc0000044-1510915933:97865..98471 | Clytia hemisphaerica | exon |
| TCONS_00004355-exon-sc0000044-1575043694:97865..98471 | TCONS_00004355-exon-sc0000044-1575043694:97865..98471 | Clytia hemisphaerica | exon |
| TCONS_00004355-exon-sc0000044-1491911889:98863..99618 | TCONS_00004355-exon-sc0000044-1491911889:98863..99618 | Clytia hemisphaerica | exon |
| TCONS_00004355-exon-sc0000044-1510915933:98863..99618 | TCONS_00004355-exon-sc0000044-1510915933:98863..99618 | Clytia hemisphaerica | exon |
| TCONS_00004355-exon-sc0000044-1575043694:98863..99618 | TCONS_00004355-exon-sc0000044-1575043694:98863..99618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:97865..99618 + |
Blast
The following BLAST results are available for this feature:
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