|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004356 ID=TCONS_00004356|Name=TCONS_00004356|organism=Clytia hemisphaerica|type=transcript|length=4140bpRun BLAST on NCBI protein sequence of TCONS_00004356-protein >TCONS_00004356-protein ID=TCONS_00004356-protein|Name=TCONS_00004356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp MTSWRVAKWILVDLLLVAFLFGKFAESAARVKRNALSDSITHYEPLNYPKRun BLAST on NCBI transcript from alignment at sc0000044:179013..193561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004356 ID=TCONS_00004356|Name=TCONS_00004356|organism=Clytia hemisphaerica|type=transcript|length=14549bp|location=Sequence derived from alignment at sc0000044:179013..193561+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:179013..193561+ >TCONS_00004356 ID=TCONS_00004356|Name=TCONS_00004356|organism=Clytia hemisphaerica|type=CDS|length=34470bp|location=Sequence derived from alignment at sc0000044:179013..193561+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004356 vs. Swiss-Prot (Human)
Match: ADA10 (Disintegrin and metalloproteinase domain-containing protein 10 OS=Homo sapiens GN=ADAM10 PE=1 SV=1) HSP 1 Score: 460.299 bits (1183), Expect = 9.937e-144 Identity = 275/707 (38.90%), Postives = 399/707 (56.44%), Query Frame = 1
Query: 202 NALSDSITHYEPLNYPKYILNTGHSRVKRSTNPNEK-LFLSFKAFRRNFVLNLEQEKSLFSDGFEFDGNS---GFSPSNLYEGHLHGDPLSRVHGFIYDDIFEGQIHCGDGNEFHIESVIQYKHLNHSKDVHSVIYNTKDVLPPKQHMCGGVKAETKDWMQSQTNETHSTGYIKYNPSSMY---GPQVHHRQRRAFDNQKTECRMLLRADFTYRDWASDDSRAMSLMSQYVKSISHIYESTNFAGGTPEGITLKIKKISIIPTTGSQLSSTEKQFASQNIGVEKFLDLASLDNHDDYCLAYVFAHRDFSMGVLGLAWIGDATGA-GGICDRHQTI-QGTLKSLNTGIVTNLNYGSTMSQKVTQITFAHEVGHNFGSQHDPAGACSPGQSGG------GNFIMYAKATSGSDTNNFKFSQCSKNYIWPVLQARSPTCFNKNTDPSCGNRVREGDEECDCGFADGGCKNDTCCYPADHADKDKRCKLTSKAQAFGALGCTQANSLCCDPSTCKPYTSNNQQCAPATECASASICVSTNQTCPAATPKPDQTYCNNASNICDKGECSGSICTLKGQFECQCT-----DEKNYCKICCQNSNVTECKPAT------------VSGDEKFLHSGSPCNNYAGYCDFLNKCRKVDAEGPLSRLKDLFFSSESIDNILDWMKSYWWACVLIGLGLILFMAAFIACCSVHTPSSN 2226
N L+ I HYE L+Y L+ H R KR+ + ++ L L F A R+F L ++++ SLFSD F+ + ++ + S++Y GH++G+ S HG + D FEG I G F++E +Y + + HSVIY+ D+ P ++ G A+ + + + + + P + GP++ R++R +K C++ ++ D + + ++ +S +VK+I IY++T+F+G I+ +K+I I T + + +F NIGVEKFL+L S NHDDYCLAYVF RDF GVLGLAW+G +G+ GGIC++ + G KSLNTGI+T NYGS + KV+ ITFAHEVGHNFGS HD C+PG+S GN+IMYA+ATSG NN KFS CS I VL+ + CF ++ P CGN + E EECDCG++D CK D CC+ A+ + ++CKL Q C+ + CC + S +++C ++CA IC CPA+ PKP+ T CN + +C G+C+GSIC G EC C D+K C +CC + + P+T SG L GSPCN++ GYCD +CR VDA+GPL+RLK FS E +NI +W+ ++WWA +L+G+ LI+ MA FI CSVHTPSSN
Sbjct: 23 NPLNKYIRHYEGLSYNVDSLHQKHQRAKRAVSHEDQFLRLDFHAHGRHFNLRMKRDTSLFSDEFKVETSNKVLDYDTSHIYTGHIYGEEGSFSHGSVIDGRFEGFIQT-RGGTFYVEPAERYIK-DRTLPFHSVIYHEDDINYPHKYGPQGGCADHSVFERMRKYQMTGVEEVTQIPQEEHAANGPELL-RKKRTTSAEKNTCQLYIQTDHLFFKYYGTREAVIAQISSHVKAIDTIYQTTDFSG--IRNISFMVKRIRINTTADEKDPTNPFRFP--NIGVEKFLELNSEQNHDDYCLAYVFTDRDFDDGVLGLAWVGAPSGSSGGICEKSKLYSDGKKKSLNTGIITVQNYGSHVPPKVSHITFAHEVGHNFGSPHDSGTECTPGESKNLGQKENGNYIMYARATSGDKLNNNKFSLCSIRNISQVLEKKRNNCFVESGQPICGNGMVEQGEECDCGYSDQ-CK-DECCFDANQPE-GRKCKLKPGKQ------CSPSQGPCCTAQC--AFKSKSEKCRDDSDCAREGICNGFTALCPASDPKPNFTDCNRHTQVCINGQCAGSICEKYGLEECTCASSDGKDDKELCHVCC----MKKMDPSTCASTGSVQWSRHFSGRTITLQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPELYENIAEWIVAHWWAVLLMGIALIMLMAGFIKICSVHTPSSN 707 The following BLAST results are available for this feature:
BLAST of TCONS_00004356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.