|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004360 ID=TCONS_00004360|Name=TCONS_00004360|organism=Clytia hemisphaerica|type=transcript|length=1538bp
GCaagatttcaagtcaattggatAAAATATTCAAAGGCTATCACACATCC
TAGCACCTTGAGACCCCCTccaaaaaaatatacaaaggGTTCTNTTGGTG
TATAATTGCaagatttcaagtcaattggatAAAATATTCAAAGGCTATCA
CACATCCTAGCACCTTGAGACCCCCtccaaaaaaatgtacaaagggTTAT
TAAAATCACAAATATTATATAACTTTAATTTTTGCAAATAAGTTTACACT
TTGTGGGTCCCTTAACTCTACTATAGGGACATTCGTTCATATTGACTGTT
ATTTCTGAATCATGAATCAGTTTACACCAATCGTCTGATTTGATAATATC
CTCGAGATAATCTGCTAAAATACTTCTCATACTATTCAAATTGTAATCTT
TacatatttctttgttttttggtTTAAATTTAACGTGAATGTTTTTATGA
AAAGCCCAAGGCATAGTGCCTGCCCTGAAGAAGTTGTACAGTCGCTTTCC
AACTTCTTTTACTTGCAATGGTAAAGGGTAGAAAAGCCATTTGTCAACAA
AATCATCAAAGTTGACACTTCCAGTATCGTTGACCCATTCTTTAGAAAGT
GTTTCTAACCGATCAAATGCAAGAAGCAACACAACATTCTTGAGGTGAAA
AGAATTCACAATAGGTgccttattaaaaaaagaatttttcaaagctaacg
ttttccaaatcattaAAGGTATTCTTAGTTTCTCTTTGAAATGTTGAAAG
AGTTTGTGCTCAAGATTGGAATGGCTCTTCCTCCAATAGATCGTGGGATC
ATGAAAGCCTTCTTCAATGTAATTAGGGGCTTTACCACCAgacataaaaa
caaaatcagAATAATATGGATTTATTACATGTTGGCCAACAGATGCAATG
TGTAAAAATGGAACCACGTCCACGACAAACGATCCCAAGCCTTGAGGACT
TTGGTGAGAGGCAGGTTGTTGATAAGAAACACCATCCTCAAGAATTAATG
GTAACATCAAATCGAATTCATTTGGTAAACAAACTTTGGTATCATCTGCA
ACACTGCCACTTATGATCAAATTGCCTGTTGGATATAATTCACATTCTGT
AGCATTTTGAAGATAGTTTtgtaattgatttttaaaaatcaaaaattttt
cgtTTGCCAATACTCTTTCATTGTCTTTTATTTTAACCTTTTccaaataa
aaacttttgagCTCATTATCAAACTGTGAAAACTTGTTTGTTAAACACCA
TATTTGTTTATCATAATCCAAAACACTTCTGCTGAGAATACTTCCAAAGT
CACTTTtaaattcttgaatttttttctctagtATGTTTTCAAATGATAAC
TTTAATTCCATCAAAGCTTTGTTCATTTTTCCATTCAAGAAATCCATATT
TTTGTCGTTTGTCTCTTTTCCATGACACTCTTCATATAAATGTTCAGAAA
AAGTACCAACATGTTCACACAAGTAAATCTTCAAGTTATGAAATTTAGTT
TCCACATCCTCACAGATTCCTCTAATTAAGTCATCAAT Run BLAST on NCBI transcript from alignment at sc0000044:200381..202218+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004360 ID=TCONS_00004360|Name=TCONS_00004360|organism=Clytia hemisphaerica|type=transcript|length=1838bp|location=Sequence derived from alignment at sc0000044:200381..202218+ (Clytia hemisphaerica)
GCaagatttcaagtcaattggatAAAATATTCAAAGGCTATCACACATCC
TAGCACCTTGAGACCCCCTccaaaaaaatatacaaaggGTTCTNTTGGTG
TATAATTGCaagatttcaagtcaattggatAAAATATTCAAAGGCTATCA
CACATCCTAGCACCTTGAGACCCCCtccaaaaaaatgtacaaagggTTAT
TAAAATCACAAATATTATATAACTTTAATTTTTGCAAATAAGTTTACACT
TTGTGGGTCCCTTAACTCTACTATAGGGACATTCGTTCATATTGACTGTT
ATTTCTGAATCATGAATCAGTTTACACCAATCGTCTGATTTGATAATATC
CTCGAGATAATCTGCTAAAATACTTCTCATACTATTCAAATTGTAATCTT
TacatatttctttgttttttggtTTAAATTTAACGTGAATGTTTTTATGA
AAAGCCCAAGGCATAGTGCCTGCCCTGAAGAAGTTGTACAGTCGCTTTCC
AACTTCTTTTACTTGCAATGGTAAAGGGTAGAAAAGCCATTTGTCAACAA
AATCATCAAAGTTGACACTTCCAGTATCGTTGACCCATTCTTTAGAAAGT
GTTTCTAACCGATCAAATGCAAGAAGCAACACAACATTCTTGAGGTGAAA
AGAATTCACAATAGGTgccttattaaaaaaagaatttttcaaagctaacg
ttttccaaatcattaAAGGTATTCTTAGTTTCTCTTTGAAATGTTGAAAG
AGTTTGTGCTCAAGATTGGAATGGCTCTTCCTCCAATAGATCGTGGGATC
ATGAAAGCCTTCTTCAATGTAATTAGGGGCTTTACCACCAgacataaaaa
caaaatcagAATAATATGGATTTATTACATGTTGGCCAACAGATGCAATG
TGTAAAAATGGAACCACGTCCACGACAAACGATCCCAAGCCTTGAGGACT
TTGGTAAGACACAAGTACATCAATAGCTGGCCCAAACTTGTAAAAATGCT
CAGATCtggcaaaattcaaaaaaattccaTCACTTTTTAAACTCTCAATC
ACATTCTCATCTGTAAAGAAATGCTTCataatttcttttaatttctgcGA
GATACTTCTGGGAGACAGATACTTTTGCgtgttgaaagtttttttcatat
CACTTACACGATTTGCAGTGTAAGATTCTTCCTCTGTCAAATACATCCAG
CAATTAGAAAAAGATTGAGTTCCTTTTTCAACTTCGATCATCACTTTCAT
TAGGTGAGAGGCAGGTTGTTGATAAGAAACACCATCCTCAAGAATTAATG
GTAACATCAAATCGAATTCATTTGGTAAACAAACTTTGGTATCATCTGCA
ACACTGCCACTTATGATCAAATTGCCTGTTGGATATAATTCACATTCTGT
AGCATTTTGAAGATAGTTTtgtaattgatttttaaaaatcaaaaattttt
cgtTTGCCAATACTCTTTCATTGTCTTTTATTTTAACCTTTTccaaataa
aaacttttgagCTCATTATCAAACTGTGAAAACTTGTTTGTTAAACACCA
TATTTGTTTATCATAATCCAAAACACTTCTGCTGAGAATACTTCCAAAGT
CACTTTtaaattcttgaatttttttctctagtATGTTTTCAAATGATAAC
TTTAATTCCATCAAAGCTTTGTTCATTTTTCCATTCAAGAAATCCATATT
TTTGTCGTTTGTCTCTTTTCCATGACACTCTTCATATAAATGTTCAGAAA
AAGTACCAACATGTTCACACAAGTAAATCTTCAAGTTATGAAATTTAGTT
TCCACATCCTCACAGATTCCTCTAATTAAGTCATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004360-exon-sc0000044-1491911889:200381..201333 | TCONS_00004360-exon-sc0000044-1491911889:200381..201333 | Clytia hemisphaerica | exon |
| TCONS_00004360-exon-sc0000044-1510915933:200381..201333 | TCONS_00004360-exon-sc0000044-1510915933:200381..201333 | Clytia hemisphaerica | exon |
| TCONS_00004360-exon-sc0000044-1575043694:200381..201333 | TCONS_00004360-exon-sc0000044-1575043694:200381..201333 | Clytia hemisphaerica | exon |
| TCONS_00004360-exon-sc0000044-1491911889:201634..202218 | TCONS_00004360-exon-sc0000044-1491911889:201634..202218 | Clytia hemisphaerica | exon |
| TCONS_00004360-exon-sc0000044-1510915933:201634..202218 | TCONS_00004360-exon-sc0000044-1510915933:201634..202218 | Clytia hemisphaerica | exon |
| TCONS_00004360-exon-sc0000044-1575043694:201634..202218 | TCONS_00004360-exon-sc0000044-1575043694:201634..202218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:200381..202218 + |
Blast
The following BLAST results are available for this feature:
|
