TCONS_00004366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004366
Unique NameTCONS_00004366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004366 ID=TCONS_00004366|Name=TCONS_00004366|organism=Clytia hemisphaerica|type=transcript|length=390bp
AGAGAAGAATTACTCATTAATTTCAtcttcttatttatttttttagaagt
ATGTGAAAGTGCAAACAATGCACATATTGGTGTAGCAGTGAAATTCAATC
CATCAATGGCAAAATACGCACAACTCCATGCCGAGTATTTGGTAGATAAA
GCGGAAAAAGGAGAAGCATTGGGATCTGTACATCAAAAATGCAAATTAAA
TTTGTTTCCAGATTTGGAAACGATACAAGGGAATGTCATGGAATATCGAA
ATGGAGGTTATGTGGAAGATCTAAAGAAAGCTCTAAAAGTGTGGTACGAT
GAGGGTGCAGGTGGCGACCATCATGACGCAATGGTTCATAACAATCTAGT
CGGTTGCGGTGTCGCCAAAAGTGGAAATATCATAAAAGTA
Run BLAST on NCBI

protein sequence of TCONS_00004366-protein

>TCONS_00004366-protein ID=TCONS_00004366-protein|Name=TCONS_00004366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
REELLINFIFLFIFLEVCESANNAHIGVAVKFNPSMAKYAQLHAEYLVDK
AEKGEALGSVHQKCKLNLFPDLETIQGNVMEYRNGGYVEDLKKALKVWYD
EGAGGDHHDAMVHNNLVGCGVAKSGNIIKV
Run BLAST on NCBI

transcript from alignment at sc0000044:350907..351697+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004366 ID=TCONS_00004366|Name=TCONS_00004366|organism=Clytia hemisphaerica|type=transcript|length=791bp|location=Sequence derived from alignment at sc0000044:350907..351697+ (Clytia hemisphaerica)
AGAGAAGAATTACTCATTAATTTCAtcttcttatttatttttttagaagt
ATGTGAAAGTGCAAACAATGCACATATTGGTGTAGCAGTGAAATTCAATC
CATCAATGGCAAAATACGCACAACTCCATGCCGAGTATTTGGTAGATAAA
GCGGAAAAAGGAGAAGCATTGGGATCTGTACATCAAAAATGCAAATTAAA
TTTGTTTCCAGATTTGGAAACGATACAAGGGAATGTCATGGAATATCGAA
ATGGAGGTTATGTGGAAGATCTAAAGAAAGCTCTAAAAGTGTGGTAAGTA
ATAATGGCGGAATTAAATTCCCCAGTGATAAATTATACTTTCAAAGAAAT
GCAAATCCTCACTTAAAATATTATGCTCTTTTTTCCATCCaaaatgaatt
ttctgacttgaaaacaatggaattcaaatcccagcCATAAAAAGAGGGGA
ATATCAGTCCCAATCAAATTTCGGTTTGTTAATTTAACCCCTCTGGCTGA
AAGAATCCTGCCGGGTCTGTGGGAAAGGGAATTACATGAGTATCTAAACT
AAGTGTACCGGGTGGTTACACTTTTTAGTTATTTCATTATGCcggtttgt
tattcaaatttcaaaacacgaaaaaagcCAGAAATGAAAATGTATTACGA
CCATGACTGTACCGTACTTTTTACTATTTTCTCTTCACTTTTAGGTACGA
TGAGGGTGCAGGTGGCGACCATCATGACGCAATGGTTCATAACAATCTAG
TCGGTTGCGGTGTCGCCAAAAGTGGAAATATCATAAAAGTA

Coding sequence (CDS) from alignment at sc0000044:350907..351697+

>TCONS_00004366 ID=TCONS_00004366|Name=TCONS_00004366|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000044:350907..351697+ (Clytia hemisphaerica)
AGAGAAGAATTACTCATTAATTTCAtcttcttatttatttttttagaagt
ATGTGAAAGTGCAAACAATGCACATATTGGTGTAGCAGTGAAATTCAATC
CATCAATGGCAAAATACGCACAACTCCATGCCGAGTATTTGGTAGATAAA
GCGGAAAAAGGAGAAGCATTGGGATCTGTACATCAAAAATGCAAATTAAA
TTTGTTTCCAGATTTGGAAACGATACAAGGGAATGTCATGGAATATCGAA
ATGGAGGTTATGTGGAAGATCTAAAGAAAGCTCTAAAAGTGTGGTACGAT
GAGGGTGCAGGTGGCGACCATCATGACGCAATGGTTCATAACAATCTAGT
CGGTTGCGGTGTCGCCAAAAGTGGAAATATCATAAAAGTAAGAGAAGAAT
TACTCATTAATTTCAtcttcttatttatttttttagaagtATGTGAAAGT
GCAAACAATGCACATATTGGTGTAGCAGTGAAATTCAATCCATCAATGGC
AAAATACGCACAACTCCATGCCGAGTATTTGGTAGATAAAGCGGAAAAAG
GAGAAGCATTGGGATCTGTACATCAAAAATGCAAATTAAATTTGTTTCCA
GATTTGGAAACGATACAAGGGAATGTCATGGAATATCGAAATGGAGGTTA
TGTGGAAGATCTAAAGAAAGCTCTAAAAGTGTGGTACGATGAGGGTGCAG
GTGGCGACCATCATGACGCAATGGTTCATAACAATCTAGTCGGTTGCGGT
GTCGCCAAAAGTGGAAATATCATAAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002442XLOC_002442Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004366-proteinTCONS_00004366-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004366-exon-sc0000044-1491911889:350907..351199TCONS_00004366-exon-sc0000044-1491911889:350907..351199Clytia hemisphaericaexon
TCONS_00004366-exon-sc0000044-1510915933:350907..351199TCONS_00004366-exon-sc0000044-1510915933:350907..351199Clytia hemisphaericaexon
TCONS_00004366-exon-sc0000044-1575043694:350907..351199TCONS_00004366-exon-sc0000044-1575043694:350907..351199Clytia hemisphaericaexon
TCONS_00004366-exon-sc0000044-1491911889:351601..351697TCONS_00004366-exon-sc0000044-1491911889:351601..351697Clytia hemisphaericaexon
TCONS_00004366-exon-sc0000044-1510915933:351601..351697TCONS_00004366-exon-sc0000044-1510915933:351601..351697Clytia hemisphaericaexon
TCONS_00004366-exon-sc0000044-1575043694:351601..351697TCONS_00004366-exon-sc0000044-1575043694:351601..351697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:350907..351697 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13615	2.67596	1.77546	3.90827	16.3885	13.3681	12.0961	17.2222	9.74524	10.4343	7.94336	8.74627	10.6895	5.4152	16.1386	20.3053	5.59146	7.08842	1.6669	2.83447	4.92734	4.43702	1.57319	1.8389	5.05072	5.07111	2.41891	1.43418	0.870222	1.32993
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014044CAP_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top