TCONS_00004369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004369
Unique NameTCONS_00004369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004369 ID=TCONS_00004369|Name=TCONS_00004369|organism=Clytia hemisphaerica|type=transcript|length=1694bp
CTCGTTCTCAAGTGACAATAACGTAATAGTCAATTTTATGCATTACAAAA
GGCAAGTCTCTTCCTCGAACAAAAATTCCGAAGCCTCATTTCTATGTAGG
AATGACGTTATCCTATTATTGTCTGCTTTACAAATGGTATGGCTTTTCTT
TGATTGGAGATTCTatagcctcgttttcaaacaagaATGACGTAAGGATT
ACCTCAATCAAGGAGTATAAATTTGGGTCCTCGTACTGCTCAAATCATTA
CAGAGATAGATCGATTCTGAAGAAACTAAGAAGtcaaaaagataaacaaa
caaattcgAAGAAAAGGAGGAGTTTGTATGaacaaaaaacttttcgaaGT
TGAAGCTGAATAAATAATCTTTGTTGTCAGAACATTTCGCTGCATCTAAG
ATATTGAACGTTTTTATTTGGATACTAACTAAATCAAGCGACAGAAAACA
AGATAAAATGGGAAGCGACAAGGATGCAAAAAAGGAGCCAACTGAAGCAC
AAAAACGTGTCGCGAAAgcgaagaaagaaaaacaaatgaaaggTTTCATC
GCCCAATGTGTTCAACAAAACCAAAACGTGGAGGACGAGGAGAGACGTAT
CCTGTCAATATTACGTCAAGGTGGACTCGATTATCAACCGAATCCTGATA
ACTTACACGAAGcggcgaaaaaaggactggatcATCAAGTCATTGCGATG
TTGAAGAAAGGATTTGGCGTTGATACGTTAGATAAAGACGGGAATACGCC
GTTGTTTTACGCAAGCGAAAATGACCGTTTCCAAACAGCCGTTATCTTGC
TTGATTATAAAGCTAACGTAAACCATAAGTCAAAACATGGCTTCACGCCG
TTAATGTACGCCGCATGGAAAGGCCACGTCGATTTAGTATCATTACTTAT
AAAACACGGCGCTGACGTTAAAGCCGTCAACGCAAACAACGATACGGCGC
TACATTTCGCCGCTTTATGTGGGTTTTCTATGGTAAGCTTGATTTTACGT
CAAGCGGGAGCTGAGACAGACCCTAAGAACAGTAAAAAGAAGAAACCATT
GGATCAAGGAGAAACATTTGTTAAAGAACTTGAATTAACTCTGACAGAAA
AAATCCCAAAGGACAGTTCGATTGAATTTCAAGAATCGAAAAGTCTTTTT
GGTATCAGAAGGGTAGCACGGGAAGTAGCAAAATATGCTGACTcatgaat
gaaaaaaactttatagATTTTTTGATGCTACAAACTACTGTAAACTTCTT
GTATGCATTGTACTACTGtagtatattttattttcacccaatttcttgtt
aatatttatttttaaaatattttcgtcggaatgcgggtgaaggaaaaatt
tttttttttctatttttgataacttaagatcattgaaatgaaattttaaa
gataactttaatgtacaaacagtatgaagtaagccctgaatactaatacT
AATAAAGACTATTGAACCCTAACGATCCTTTTCCCGAAGCACCCCCTGCC
CGAAGTTACGGATCGCTTTAATAAAGATTAAAGTTTAAGATTAGAAGAAA
TTAAGCCGTCAATCCGTCCAATCGTCAAGACATTCTTAACTTAAAGGACA
ATAACATAGTGAACATTCtttaagtacacgttttttataagaacatccaa
aatttctgaagCCTTTAGATGTCCTTAACTTTTccagtttcaag
Run BLAST on NCBI

protein sequence of Ankyrin repeat protein

>TCONS_00004369-protein ID=TCONS_00004369-protein|Name=Ankyrin repeat protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
MGSDKDAKKEPTEAQKRVAKAKKEKQMKGFIAQCVQQNQNVEDEERRILS
ILRQGGLDYQPNPDNLHEAAKKGLDHQVIAMLKKGFGVDTLDKDGNTPLF
YASENDRFQTAVILLDYKANVNHKSKHGFTPLMYAAWKGHVDLVSLLIKH
GADVKAVNANNDTALHFAALCGFSMVSLILRQAGAETDPKNSKKKKPLDQ
GETFVKELELTLTEKIPKDSSIEFQESKSLFGIRRVAREVAKYADS
Run BLAST on NCBI

transcript from alignment at sc0000044:541256..543745+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004369 ID=TCONS_00004369|Name=TCONS_00004369|organism=Clytia hemisphaerica|type=transcript|length=2490bp|location=Sequence derived from alignment at sc0000044:541256..543745+ (Clytia hemisphaerica)
CTCGTTCTCAAGTGACAATAACGTAATAGTCAATTTTATGCATTACAAAA
GGCAAGTCTCTTCCTCGAACAAAAATTCCGAAGCCTCATTTCTATGTAGG
AATGACGTTATCCTATTATTGTCTGCTTTACAAATGGTATGGCTTTTCTT
TGATTGGAGATTCTatagcctcgttttcaaacaagaATGACGTAAGGATT
ACCTCAATCAAGGAGTATAAATTTGGGTCCTCGTACTGCTCAAATCATTA
CAGAGATAGATCGATTCTGAAGAAACTAAGAAGtcaaaaagataaacaaa
caaattcgAAGAAAAGGAGGAGTTTGTATGaacaaaaaacttttcgaaGT
TGAAGCTGAATAAATAATCTTTGTTGTCAGAACATTTCGCTGCATCTAAG
ATATTGAACGTTTTTATTTGGATACTAACTAAATCAAGCGACAGAAAACA
AGGTAATATTTCGactctaattttgaattttgaattgacTCCAAACTATG
GGATTGAATTCAGATTacacccggggggggtactaggacaAAATGGATTA
CGGGGctgcgccgctggtcagggtacctttttcaaccTCCACGGGTCCCA
GGTAGGGTtaaaattctgcattttagaggTGAAAGTGTTGACAAAATATA
TTCtaaacttgtgaaaaaaatcaagaataattatttttgtgCATTGGAac
taatgttcaagctctatcaatccttttacctaagtaatccaaagaaataa
aattatgacggattattgtcgtttatatgttcatgtttTTCTAATGGTCA
CACTTCTCCTTTGAAGTACAGGACCGAACAATTATCATTGATAATCATAG
AACTGTTATAAATTACAGCTAATTGAATTGTCAAAATACAATTCCAAATT
AATTTAACAATAATTTTTAGGAGTTTTTGAAAGCTTCCAAGTCTGTTGTT
GTATCATAAAGCAACCGTAGCACAAAGATAGTGTtagcttctgctcatcc
tcttacgaaaaagttttttatataaggaattAAGCTTATATAAGGTCTGC
AAATTAGACTAAGGTACTAGATGCTACTATGCGCAAACCAGTGCATACCA
TCAAAAAGACTTGTTGATTGTATATTCAACTGAACAAGTATGTATATGCA
TACAGTTAGTATATTGAAAATTAATGTAAATGTAAATTCATGTTTTACAC
CATATTCATGTATACCGTagataattttatttttcgtttgATTTCCAGAT
AAAATGGGAAGCGACAAGGATGCAAAAAAGGAGCCAACTGAAGCACAAAA
ACGTGTCGCGAAAgcgaagaaagaaaaacaaatgaaaggTTTCATCGCCC
AATGTGTTCAACAAAACCAAAACGTGGAGGACGAGGAGAGACGTATCCTG
TCAATATTACGTCAAGGTGGACTCGATTATCAACCGAATCCTGATAACTT
ACACGAAGcggcgaaaaaaggactggatcATCAAGTCATTGCGATGTTGA
AGAAAGGATTTGGCGTTGATACGTTAGATAAAGACGGGAATACGCCGTTG
TTTTACGCAAGCGAAAATGACCGTTTCCAAACAGCCGTTATCTTGCTTGA
TTATAAAGCTAACGTAAACCATAAGTCAAAACATGGCTTCACGCCGTTAA
TGTACGCCGCATGGAAAGGCCACGTCGATTTAGTATCATTACTTATAAAA
CACGGCGCTGACGTTAAAGCCGTCAACGCAAACAACGATACGGCGCTACA
TTTCGCCGCTTTATGTGGGTTTTCTATGGTAAGCTTGATTTTACGTCAAG
CGGGAGCTGAGACAGACCCTAAGAACAGTAAAAAGAAGAAACCATTGGAT
CAAGGAGAAACATTTGTTAAAGAACTTGAATTAACTCTGACAGAAAAAAT
CCCAAAGGACAGTTCGATTGAATTTCAAGAATCGAAAAGTCTTTTTGGTA
TCAGAAGGGTAGCACGGGAAGTAGCAAAATATGCTGACTcatgaatgaaa
aaaactttatagATTTTTTGATGCTACAAACTACTGTAAACTTCTTGTAT
GCATTGTACTACTGtagtatattttattttcacccaatttcttgttaata
tttatttttaaaatattttcgtcggaatgcgggtgaaggaaaaatttttt
tttttctatttttgataacttaagatcattgaaatgaaattttaaagata
actttaatgtacaaacagtatgaagtaagccctgaatactaatacTAATA
AAGACTATTGAACCCTAACGATCCTTTTCCCGAAGCACCCCCTGCCCGAA
GTTACGGATCGCTTTAATAAAGATTAAAGTTTAAGATTAGAAGAAATTAA
GCCGTCAATCCGTCCAATCGTCAAGACATTCTTAACTTAAAGGACAATAA
CATAGTGAACATTCtttaagtacacgttttttataagaacatccaaaatt
tctgaagCCTTTAGATGTCCTTAACTTTTccagtttcaag

Coding sequence (CDS) from alignment at sc0000044:541256..543745+

>TCONS_00004369 ID=TCONS_00004369|Name=TCONS_00004369|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at sc0000044:541256..543745+ (Clytia hemisphaerica)
ATGGGAAGCGACAAGGATGCAAAAAAGGAGCCAACTGAAGCACAAAAACG
TGTCGCGAAAgcgaagaaagaaaaacaaatgaaaggTTTCATCGCCCAAT
GTGTTCAACAAAACCAAAACGTGGAGGACGAGGAGAGACGTATCCTGTCA
ATATTACGTCAAGGTGGACTCGATTATCAACCGAATCCTGATAACTTACA
CGAAGcggcgaaaaaaggactggatcATCAAGTCATTGCGATGTTGAAGA
AAGGATTTGGCGTTGATACGTTAGATAAAGACGGGAATACGCCGTTGTTT
TACGCAAGCGAAAATGACCGTTTCCAAACAGCCGTTATCTTGCTTGATTA
TAAAGCTAACGTAAACCATAAGTCAAAACATGGCTTCACGCCGTTAATGT
ACGCCGCATGGAAAGGCCACGTCGATTTAGTATCATTACTTATAAAACAC
GGCGCTGACGTTAAAGCCGTCAACGCAAACAACGATACGGCGCTACATTT
CGCCGCTTTATGTGGGTTTTCTATGGTAAGCTTGATTTTACGTCAAGCGG
GAGCTGAGACAGACCCTAAGAACAGTAAAAAGAAGAAACCATTGGATCAA
GGAGAAACATTTGTTAAAGAACTTGAATTAACTCTGACAGAAAAAATCCC
AAAGGACAGTTCGATTGAATTTCAAGAATCGAAAAGTCTTTTTGGTATCA
GAAGGGTAGCACGGGAAGTAGCAAAATATGCTGACTcatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002444XLOC_002444Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Ankyrin repeat proteinTCONS_00004369-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004369-exon-sc0000044-1491911889:541256..541707TCONS_00004369-exon-sc0000044-1491911889:541256..541707Clytia hemisphaericaexon
TCONS_00004369-exon-sc0000044-1510915933:541256..541707TCONS_00004369-exon-sc0000044-1510915933:541256..541707Clytia hemisphaericaexon
TCONS_00004369-exon-sc0000044-1575043694:541256..541707TCONS_00004369-exon-sc0000044-1575043694:541256..541707Clytia hemisphaericaexon
TCONS_00004369-exon-sc0000044-1491911889:542504..543745TCONS_00004369-exon-sc0000044-1491911889:542504..543745Clytia hemisphaericaexon
TCONS_00004369-exon-sc0000044-1510915933:542504..543745TCONS_00004369-exon-sc0000044-1510915933:542504..543745Clytia hemisphaericaexon
TCONS_00004369-exon-sc0000044-1575043694:542504..543745TCONS_00004369-exon-sc0000044-1575043694:542504..543745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:541256..543745 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0945725	0.396053	0.139964	0.136933	75.8238	44.8729	27.1766	35.6423	33.959	78.9348	34.8166	8.64438	36.2823	25.0808	4.49236	3.06864	1.85596	1.93375	109.209	144.65	27.6088	25.0509	22.1107	28.9931	76.9781	157.894	2307.16	1686.39	42.1435	25.5881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00004369 vs. Swiss-Prot (Human)
Match: ANR27 (Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.331e-16
Identity = 52/145 (35.86%), Postives = 70/145 (48.28%), Query Frame = 2 
Query:  653 LHEAAKKGLDHQVIAMLKKGFGVDTLDKDGNTPLFYASENDRFQTAVILLDYKANVNHKSKHGFTPLMYAAWKGHVDLVSLLIKHGADVKAVNANNDTALHFAALCGFSMVSLILRQAGAETDPKNSKKKKPLDQGETFVKELEL 1087
            LH AA  G    +  +LK G      + D   PL  A +   FQ    LLD  A  N K   G TPL+YA   GH +LV+LL++HGA + A N   +TALH A +     V  +L   GA     N +++  +D  E   K +EL
Sbjct:  748 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMEL 892
The following BLAST results are available for this feature:
BLAST of TCONS_00004369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR275.331e-1635.86Ankyrin repeat domain-containing protein 27 OS=Hom... [more]
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