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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004375 ID=TCONS_00004375|Name=TCONS_00004375|organism=Clytia hemisphaerica|type=transcript|length=848bp
tcaatgcaatgtcttctttcacctttttcgaatgtttttgttttgatttt
gatttttgttgttgtgTCCTCAAAGACAGATCCAAGATCCAAGAAAGGCA
GTGAGTGTGCAGCAGGAAGgatATGTCTTGCTATAAGAATGTATTTCACA
GACGTACTGGGAAATTTGGTGCTTTTGTTGCTTTTGCACTTGGATTTTTA
TTTGTATTTGCTATTCTGAACATCCACTATGTTATATACTCGTCATCGGC
TAAAGGGATAACAGCTTCAACTAAAGATCAgataaagaaaattcaaaata
atcaaactcTTCGAATTACTGGCAACAATTCTACTGCTGCAACAAAATCC
ACATCAATACCTACAACTACGCCCAACTTCTTAAACACCACCCAGACGCC
CACAACAGAGAGCGCCATCATGAAAGAATTATACAAAATAGAGAGCAGCT
TGAAGGATTTTGataacaaatttaaaaagataacGAGCTGGGAAAAATAC
CGGGAGCAtcgagaaaagttaaaagcATTTGTTCATACTTCTAATGTCGA
AACTTCTAAAAAAAGGTATGACATGTTTCACCCTCATGTTTTAGTCGATA
AAGTCACTTTGGATTGTAAAAGGCACTACAAAGTTGTTGTTCTTGTGACG
TCATATGCTAAGCACTTTGAGCGTCGAGAATGGATTCGAAAAGCATGGGG
CAACCAAACATTTTGGAATAAAACTCATGAAAATTGGCAAGTGATTTTCA
ACGTAGGAGCTGTAGACAGTGAAGTTAAAGAAACCTATAAAAAGTTAATG
GTGGAATCTCAGAAATACGGAGATTTGCTGGTTCTAGATATCCCGGAA Run BLAST on NCBI protein sequence of TCONS_00004375-protein >TCONS_00004375-protein ID=TCONS_00004375-protein|Name=TCONS_00004375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MSCYKNVFHRRTGKFGAFVAFALGFLFVFAILNIHYVIYSSSAKGITAST
KDQIKKIQNNQTLRITGNNSTAATKSTSIPTTTPNFLNTTQTPTTESAIM
KELYKIESSLKDFDNKFKKITSWEKYREHREKLKAFVHTSNVETSKKRYD
MFHPHVLVDKVTLDCKRHYKVVVLVTSYAKHFERREWIRKAWGNQTFWNK
THENWQVIFNVGAVDSEVKETYKKLMVESQKYGDLLVLDIPE Run BLAST on NCBI transcript from alignment at sc0000044:771393..773488+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004375 ID=TCONS_00004375|Name=TCONS_00004375|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at sc0000044:771393..773488+ (Clytia hemisphaerica)
tcaatgcaatgtcttctttcacctttttcgaatgtttttgttttgatttt
gatttttgttgttgtgTCCTCAAAGACAGATCCAAGATCCAAGAAAGGCA
GTGAGTGTGCAGCAGGAAGGTAAAATGTGAATTTTTCTTCTGTGATTACA
TCAATTCTTGAATATTTATTCTCAGCATATTTATTATTGACGACCATCAC
AATACAAAGTGCTACAGTCATTCGATTCAAATGCATGGAGTCTTTTCATA
AATatctgataaaaataatttattattgTAGTATTTTTACCTAATAATCT
ATAATGACATTTTCATCCACATGGCTCCCTTAGCTTAGTGGAGAATGTGA
AATTTCGTTGGTTTCACCGGTTTGCTGTAATTTGAAGCAATTTTTTCAGA
GTGAGTTCGCTATAAATCGAGTTGAATGGATTGTATCAAATCGAACCTTT
GTTTTGAGAGGAGTGTAGAGAAAATAATGTACAATCAACTCTCTTTACTA
AGAACATCTGTTATTCTATGATTCTACAAGTTCTTCATTCCTAGTAAGTA
ACAGCGAGATTAAACCAACTATACAAAGACGCTCTCTagaaaattcatga
tattttacaaataaaattaaacccttaaattatttttgattttaggatAT
GTCTTGCTATAAGAATGTATTTCACAGACGTACTGGGAAATTTGGTGCTT
TTGTTGCTTTTGCACTTGGATTTTTATTTGTATTTGCTATTCTGAACATC
CACTATGTTATATACTCGTCATCGGCTAAAGGGATAACAGCTTCAACTAA
AGATCAgataaagaaaattcaaaataatcaaactcTTCGAATTACTGGTa
agatttattgtttcattAGGGAAAAGGTAAAGTTTTATCTTATCTTTAGC
TAAGATTCAACagctagactggagtcgttcataatgcgtgtaatacagta
atatggttGTTATATTGATGATAATTTCCCCTCAATTGCTTTTTGCTCCT
CCAGCCTCCTTTTTAGTTGTCGAATTGTTGAATTTAAAACTCGAAGTAAA
AGGGAAAGGGATAAATAAATTAGTGACATGAGAAACATTGAAAACACTTG
TCTTTTGGTGCCAAGAAGAACATGACCAATGGCATAGTCTAAGTCAAAta
actatctaagaaataagccgaAGAAAATCCACATTCGGGTTTCCTTGCCG
AAAGAGTTTACAGCCTACAGAGTTTGACGGTTTTGatttcttcgaaactc
taccGCCGATTTTTCCGTATATCCCGCCATTACGGCTTTGAACTCGCCTT
TAGTATtcctgtaacggacgataacactGTTTATCCTCCCGCTAATACGC
TACTCCTACCTACCTACCTAtctacctacctacctacctacctacctagG
TTGGGTGGCTTTTTTTGATGACATAAACTCTTCTTTCATAGCTTTCATAG
CTTATGTTTTCAATTTTGCACCCATAACTCAGTACAAGCTAAATAAAATT
ATCAAAGTTAGCAAAGTTGCGTCTTATAAGAATGGTCTAGACGATTTAAA
TTCCAGCTTTTGTTTTCAGGCAACAATTCTACTGCTGCAACAAAATCCAC
ATCAATACCTACAACTACGCCCAACTTCTTAAACACCACCCAGACGCCCA
CAACAGAGAGCGCCATCATGAAAGAATTATACAAAATAGAGAGCAGCTTG
AAGGATTTTGataacaaatttaaaaagataacGAGCTGGGAAAAATACCG
GGAGCAtcgagaaaagttaaaagcATTTGTTCATACTTCTAATGTCGAAA
CTTCTAAAAAAAGGTATGACATGTTTCACCCTCATGTTTTAGTCGATAAA
GTCACTTTGGATTGTAAAAGGCACTACAAAGTTGTTGTTCTTGTGACGTC
ATATGCTAAGCACTTTGAGCGTCGAGAATGGATTCGAAAAGCATGGGGCA
ACCAAACATTTTGGAATAAAACTCATGAAAATTGGCAAGTGATTTTCAAC
GTAGGAGCTGTAGACAGTGAAGTTAAAGAAACCTATAAAAAGTTAATGGT
GGAATCTCAGAAATACGGAGATTTGCTGGTTCTAGATATCCCGGAA Coding sequence (CDS) from alignment at sc0000044:771393..773488+ >TCONS_00004375 ID=TCONS_00004375|Name=TCONS_00004375|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000044:771393..773488+ (Clytia hemisphaerica)
ATGTCTTGCTATAAGAATGTATTTCACAGACGTACTGGGAAATTTGGTGC
TTTTGTTGCTTTTGCACTTGGATTTTTATTTGTATTTGCTATTCTGAACA
TCCACTATGTTATATACTCGTCATCGGCTAAAGGGATAACAGCTTCAACT
AAAGATCAgataaagaaaattcaaaataatcaaactcTTCGAATTACTGG
CAACAATTCTACTGCTGCAACAAAATCCACATCAATACCTACAACTACGC
CCAACTTCTTAAACACCACCCAGACGCCCACAACAGAGAGCGCCATCATG
AAAGAATTATACAAAATAGAGAGCAGCTTGAAGGATTTTGataacaaatt
taaaaagataacGAGCTGGGAAAAATACCGGGAGCAtcgagaaaagttaa
aagcATTTGTTCATACTTCTAATGTCGAAACTTCTAAAAAAAGGTATGAC
ATGTTTCACCCTCATGTTTTAGTCGATAAAGTCACTTTGGATTGTAAAAG
GCACTACAAAGTTGTTGTTCTTGTGACGTCATATGCTAAGCACTTTGAGC
GTCGAGAATGGATTCGAAAAGCATGGGGCAACCAAACATTTTGGAATAAA
ACTCATGAAAATTGGCAAGTGATTTTCAACGTAGGAGCTGTAGACAGTGA
AGTTAAAGAAACCTATAAAAAGTTAATGGTGGAATCTCAGAAATACGGAG
ATTTGCTGGTTCTAGATATCCCGGAAATGTCTTGCTATAAGAATGTATTT
CACAGACGTACTGGGAAATTTGGTGCTTTTGTTGCTTTTGCACTTGGATT
TTTATTTGTATTTGCTATTCTGAACATCCACTATGTTATATACTCGTCAT
CGGCTAAAGGGATAACAGCTTCAACTAAAGATCAgataaagaaaattcaa
aataatcaaactcTTCGAATTACTGGCAACAATTCTACTGCTGCAACAAA
ATCCACATCAATACCTACAACTACGCCCAACTTCTTAAACACCACCCAGA
CGCCCACAACAGAGAGCGCCATCATGAAAGAATTATACAAAATAGAGAGC
AGCTTGAAGGATTTTGataacaaatttaaaaagataacGAGCTGGGAAAA
ATACCGGGAGCAtcgagaaaagttaaaagcATTTGTTCATACTTCTAATG
TCGAAACTTCTAAAAAAAGGTATGACATGTTTCACCCTCATGTTTTAGTC
GATAAAGTCACTTTGGATTGTAAAAGGCACTACAAAGTTGTTGTTCTTGT
GACGTCATATGCTAAGCACTTTGAGCGTCGAGAATGGATTCGAAAAGCAT
GGGGCAACCAAACATTTTGGAATAAAACTCATGAAAATTGGCAAGTGATT
TTCAACGTAGGAGCTGTAGACAGTGAAGTTAAAGAAACCTATAAAAAGTT
AATGGTGGAATCTCAGAAATACGGAGATTTGCTGGTTCTAGATATCCCGG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004375-exon-sc0000044-1491911889:771393..771511 | TCONS_00004375-exon-sc0000044-1491911889:771393..771511 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1510915933:771393..771511 | TCONS_00004375-exon-sc0000044-1510915933:771393..771511 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1575043694:771393..771511 | TCONS_00004375-exon-sc0000044-1575043694:771393..771511 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1491911889:772038..772239 | TCONS_00004375-exon-sc0000044-1491911889:772038..772239 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1510915933:772038..772239 | TCONS_00004375-exon-sc0000044-1510915933:772038..772239 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1575043694:772038..772239 | TCONS_00004375-exon-sc0000044-1575043694:772038..772239 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1491911889:772962..773488 | TCONS_00004375-exon-sc0000044-1491911889:772962..773488 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1510915933:772962..773488 | TCONS_00004375-exon-sc0000044-1510915933:772962..773488 | Clytia hemisphaerica | exon |
| TCONS_00004375-exon-sc0000044-1575043694:772962..773488 | TCONS_00004375-exon-sc0000044-1575043694:772962..773488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:771393..773488 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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