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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004401 ID=TCONS_00004401|Name=TCONS_00004401|organism=Clytia hemisphaerica|type=transcript|length=2513bp
TtacgatgacgtcatattttgcAGATTTCCTGCGAGAGTTACTTTATGAA
GTTCATTGACATGCAGATGAGTtcaatgatatttttttaaggCCCTCTTT
ATATCAGATCGATAAAAGTGAGCaagataaaaatttaaaagcttGCTTTT
TACAAGCATTAATATATATTCCAGATGTATGTTNATTGATGACTTAATTA
GAGGAATCTGTGAGGATGTGGAAACTAAATTTCATAACTTGAAGATTTAC
TTGTGTGAACATGTTGGTACTTTTTCTGAACATTTATATGAAGAGTGTCA
TGGAAAAGAGACAAACGACAAAAATATGGATTTCTTGAATGGAAAAATGA
ACAAAGCTTTGATGGAATTAAAGTTATCATTTGAAAACATactagagaaa
aaaattcaagaatttaAAAGTGACTTTGGAAGTATTCTCAGCAGAAGTGT
TTTGGATTATGATAAACAAATATGGTGTTTAACAAACAAGTTTTCACAGT
TTGATAATGAGctcaaaagtttttatttggAAAAGGTTAAAATAAAAGAC
AATGAAAGAGTATTGGCAAacgaaaaatttttgatttttaaaaatcaatt
acaAAACTATCTTCAAAATGCTACAGAATGTGAATTATATCCAACAGGCA
ATTTGATCATAAGTGGCAGTGTTGCAGATGATACCAAAGTTTGTTTACCA
AATGAATTCGATTTGATGTTACCATTAATTCTTGAGGATGGTGTTTCTTA
TCAACAACCTGCCTCTCACCTAATGAAAGTGATGATCGAAGTTGAAAAAG
GAACTCAATCTTTTTCTAATTGCTGGATGTATTTGACAGAGGAAGAATCT
TACACTGCAAATCGTGTAAGTGatatgaaaaaaactttcaacacGCAAAA
GTATCTGTCTCCCAGAAGTATCTCgcagaaattaaaagaaattatGAAGC
ATTTCTTTACAGATGAGAATGTGATTGAGAGTTTAAAAAGTGAtggaatt
tttttgaattttgccaGATCTGAGCATTTTTACAAGTTTGGGCCAGCTAT
TGATGTACTTGTGTCTTACCAAAGTCCTCAAGGCTTGGGATCGTTTGTCG
TGGACGTGGTTCCATTTTTACACATTGCATCTGTTGGCCAACATGTAATA
AATCCATATTATTctgattttgtttttatgtcTGGTGGTAAAGCCCCTAA
TTACATTGAAGAAGGCTTTCATGATCCCACGATCTATTGGAGGAAGAGCC
ATTCCAATCTTGAGCACAAACTCTTTCAACATTTCAAAGAGAAACTAAGA
ATACCTTtaatgatttggaaaacgttagctttgaaaaattctttttttaa
taaggcACCTATTGTGAATTCTTTTCACCTCAAGAATGTTGTGTTGCTTC
TTGCATTTGATCGGTTAGAAACACTTTCTAAAGAATGGGTCAACGATACT
GGAAGTGTCAACTTTGATGATTTTGTTGACAAATGGCTTTTCTACCCTTT
ACCATTGCAAGTAAAAGAAGTTGGAAAGCGACTGTACAACTTCTTCAGGG
CAGGCACTATGCCTTGGGCTTTTCATAAAAACATTCACGTTAAATTTAAa
ccaaaaaacaaagaaatatgtAAAGATTACAATTTGAATAGTATGAGAAG
TATTTTAGCAGATTATCTCGAGGATATTATCAAATCAGACGATTGGTGTA
AACTGATTCATGATTCAGAAATAACAGTCAATATGAACGAATGTCCCTAT
AGTAGAGTTAAGGGACCCACAAAGTGTAAACTTATTTGCAAAAATTAAAG
TTATATAATATTTGTGATTTTAATAAccctttgtacatttttttggaGGG
GGTCTCAAGGTGCTAGGATGTGTGATAGCCTTTGAATATTTTatccaatt
gacttgaaatcttGCAATTATACACCAANAGAACcctttgtatatttttt
tggAGGGGGTCTCAAGGTGCTAGGATGTGTGATAGCCTTTGAATATTTTa
tccaattgacttgaaatcttGCAATTATACACCAAATATGAATTCTTTAG
TAAaaattttGTGAAGTATCTCCACCTACCAAatacttttgaacaaaaaa
ttgaatatacttgaagtgttttttcaattttagatttTGTACCGAGATAG
ATTTTGCGTTCTTATCTAGGACGGGGGTAGGAGTAGGAGACCACATGCTA
CggtctttatttttttattaattatgtGTTCTGACTTCTAGGAACATTTT
ATTGCACAAAGTTTCCAAATTCAAAGATTGTGTGAATTTTATGAGACCAA
CGTTATAGTAGAGATTTATAAAAAGGGAGACTTCGTAATCTCGATTTAGC
CCCAAAATTACTGCTGGATTAAGATCTAAATAGATGTTTGGCTTAAGTAA
GGCATGGTTGAGCCATTATCAAGATTTGAGCATCTTTGCTTCATTAATTA
CAAAGTGAAGTAGCCTCAAAAAGTTGCGTTTCTTCTAAAATAATGGAAAA
TTCTGTATTTCTC Run BLAST on NCBI protein sequence of TCONS_00004401-protein >TCONS_00004401-protein ID=TCONS_00004401-protein|Name=TCONS_00004401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp
MXIDDLIRGICEDVETKFHNLKIYLCEHVGTFSEHLYEECHGKETNDKNM
DFLNGKMNKALMELKLSFENILEKKIQEFKSDFGSILSRSVLDYDKQIWC
LTNKFSQFDNELKSFYLEKVKIKDNERVLANEKFLIFKNQLQNYLQNATE
CELYPTGNLIISGSVADDTKVCLPNEFDLMLPLILEDGVSYQQPASHLMK
VMIEVEKGTQSFSNCWMYLTEEESYTANRVSDMKKTFNTQKYLSPRSISQ
KLKEIMKHFFTDENVIESLKSDGIFLNFARSEHFYKFGPAIDVLVSYQSP
QGLGSFVVDVVPFLHIASVGQHVINPYYSDFVFMSGGKAPNYIEEGFHDP
TIYWRKSHSNLEHKLFQHFKEKLRIPLMIWKTLALKNSFFNKAPIVNSFH
LKNVVLLLAFDRLETLSKEWVNDTGSVNFDDFVDKWLFYPLPLQVKEVGK
RLYNFFRAGTMPWAFHKNIHVKFKPKNKEICKDYNLNSMRSILADYLEDI
IKSDDWCKLIHDSEITVNMNECPYSRVKGPTKCKLICKN Run BLAST on NCBI transcript from alignment at sc0000044:199798..202402- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004401 ID=TCONS_00004401|Name=TCONS_00004401|organism=Clytia hemisphaerica|type=transcript|length=2605bp|location=Sequence derived from alignment at sc0000044:199798..202402- (Clytia hemisphaerica)
TTACGATGACGTCATATTTTGCAGATTTCCTGCGAGAGTTACTTTATGAA
GTTCATTGACATGCAGATGAGTTCAATGATATTTTTTTAAGGCCCTCTTT
ATATCAGATCGATAAAAGTGAGCAAGATAAAAATTTAAAAGCTTGCTTTT
TACAAGCATTAATATATATTCCAGATGTATGTTNATTGATGACTTAATTA
GAGGAATCTGTGAGGATGTGGAAACTAAATTTCATAACTTGAAGATTTAC
TTGTGTGAACATGTTGGTACTTTTTCTGAACATTTATATGAAGAGTGTCA
TGGAAAAGAGACAAACGACAAAAATATGGATTTCTTGAATGGAAAAATGA
ACAAAGCTTTGATGGAATTAAAGTTATCATTTGAAAACATACTAGAGAAA
AAAATTCAAGAATTTAAAAGTGACTTTGGAAGTATTCTCAGCAGAAGTGT
TTTGGATTATGATAAACAAATATGGTGTTTAACAAACAAGTTTTCACAGT
TTGATAATGAGCTCAAAAGTTTTTATTTGGAAAAGGTTAAAATAAAAGAC
AATGAAAGAGTATTGGCAAACGAAAAATTTTTGATTTTTAAAAATCAATT
ACAAAACTATCTTCAAAATGCTACAGAATGTGAATTATATCCAACAGGCA
ATTTGATCATAAGTGGCAGTGTTGCAGATGATACCAAAGTTTGTTTACCA
AATGAATTCGATTTGATGTTACCATTAATTCTTGAGGATGGTGTTTCTTA
TCAACAACCTGCCTCTCACCTAATGAAAGTGATGATCGAAGTTGAAAAAG
GAACTCAATCTTTTTCTAATTGCTGGATGTATTTGACAGAGGAAGAATCT
TACACTGCAAATCGTGTAAGTGATATGAAAAAAACTTTCAACACGCAAAA
GTATCTGTCTCCCAGAAGTATCTCGCAGAAATTAAAAGAAATTATGAAGC
ATTTCTTTACAGATGAGAATGTGATTGAGAGTTTAAAAAGTGATGGAATT
TTTTTGAATTTTGCCAGATCTGAGCATTTTTACAAGTTTGGGCCAGCTAT
TGATGTACTTGTGTCTTACCAAAGTCCTCAAGGCTTGGGATCGTTTGTCG
TGGACGTGGTTCCATTTTTACACATTGCATCTGTTGGCCAACATGTAATA
AATCCATATTATTCTGATTTTGTTTTTATGTCTGGTGGTAAAGCCCCTAA
TTACATTGAAGAAGGCTTTCATGATCCCACGATCTATTGGAGGAAGAGCC
ATTCCAATCTTGAGCACAAACTCTTTCAACATTTCAAAGAGAAACTAAGA
ATACCTTTAATGATTTGGAAAACGTTAGCTTTGAAAAATTCTTTTTTTAA
TAAGGCACCTATTGTGAATTCTTTTCACCTCAAGAATGTTGTGTTGCTTC
TTGCATTTGATCGGTTAGAAACACTTTCTAAAGAATGGGTCAACGATACT
GGAAGTGTCAACTTTGATGATTTTGTTGACAAATGGCTTTTCTACCCTTT
ACCATTGCAAGTAAAAGAAGTTGGAAAGCGACTGTACAACTTCTTCAGGG
CAGGCACTATGCCTTGGGCTTTTCATAAAAACATTCACGTTAAATTTAAA
CCAAAAAACAAAGAAATATGTAAAGATTACAATTTGAATAGTATGAGAAG
TATTTTAGCAGATTATCTCGAGGATATTATCAAATCAGACGATTGGTGTA
AACTGATTCATGATTCAGAAATAACAGTCAATATGAACGAATGTCCCTAT
AGTAGAGTTAAGGGACCCACAAAGTGTAAACTTATTTGCAAAAATTAAAG
TTATATAATATTTGTGATTTTAATAACCCTTTGTACATTTTTTTGGAGGG
GGTCTCAAGGTGCTAGGATGTGTGATAGCCTTTGAATATTTTATCCAATT
GACTTGAAATCTTGCAATTATACACCAANAGAACCCTTTGTATATTTTTT
TGGAGGGGGTCTCAAGGTGCTAGGATGTGTGATAGCCTTTGAATATTTTA
TCCAATTGACTTGAAATCTTGCAATTATACACCAAATATGAATTCTTTAG
TAAATATTTTGGCATCATTGATGATATTATCGTATTCTTTGAAGATGCCA
AAAAAGGACCACATCTCACTTTTTTTCAGTTTCATTTTTTTGCACAAATT
TTGTGAAGTATCTCCACCTACCAAATACTTTTGAACAAAAAATTGAATAT
ACTTGAAGTGTTTTTTCAATTTTAGATTTTGTACCGAGATAGATTTTGCG
TTCTTATCTAGGACGGGGGTAGGAGTAGGAGACCACATGCTACGGTCTTT
ATTTTTTTATTAATTATGTGTTCTGACTTCTAGGAACATTTTATTGCACA
AAGTTTCCAAATTCAAAGATTGTGTGAATTTTATGAGACCAACGTTATAG
TAGAGATTTATAAAAAGGGAGACTTCGTAATCTCGATTTAGCCCCAAAAT
TACTGCTGGATTAAGATCTAAATAGATGTTTGGCTTAAGTAAGGCATGGT
TGAGCCATTATCAAGATTTGAGCATCTTTGCTTCATTAATTACAAAGTGA
AGTAGCCTCAAAAAGTTGCGTTTCTTCTAAAATAATGGAAAATTCTGTAT
TTCTC Coding sequence (CDS) from alignment at sc0000044:199798..202402- >TCONS_00004401 ID=TCONS_00004401|Name=TCONS_00004401|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000044:199798..202402- (Clytia hemisphaerica)
ATGTTNATTGATGACTTAATTAGAGGAATCTGTGAGGATGTGGAAACTAA
ATTTCATAACTTGAAGATTTACTTGTGTGAACATGTTGGTACTTTTTCTG
AACATTTATATGAAGAGTGTCATGGAAAAGAGACAAACGACAAAAATATG
GATTTCTTGAATGGAAAAATGAACAAAGCTTTGATGGAATTAAAGTTATC
ATTTGAAAACATACTAGAGAAAAAAATTCAAGAATTTAAAAGTGACTTTG
GAAGTATTCTCAGCAGAAGTGTTTTGGATTATGATAAACAAATATGGTGT
TTAACAAACAAGTTTTCACAGTTTGATAATGAGCTCAAAAGTTTTTATTT
GGAAAAGGTTAAAATAAAAGACAATGAAAGAGTATTGGCAAACGAAAAAT
TTTTGATTTTTAAAAATCAATTACAAAACTATCTTCAAAATGCTACAGAA
TGTGAATTATATCCAACAGGCAATTTGATCATAAGTGGCAGTGTTGCAGA
TGATACCAAAGTTTGTTTACCAAATGAATTCGATTTGATGTTACCATTAA
TTCTTGAGGATGGTGTTTCTTATCAACAACCTGCCTCTCACCTAATGAAA
GTGATGATCGAAGTTGAAAAAGGAACTCAATCTTTTTCTAATTGCTGGAT
GTATTTGACAGAGGAAGAATCTTACACTGCAAATCGTGTAAGTGATATGA
AAAAAACTTTCAACACGCAAAAGTATCTGTCTCCCAGAAGTATCTCGCAG
AAATTAAAAGAAATTATGAAGCATTTCTTTACAGATGAGAATGTGATTGA
GAGTTTAAAAAGTGATGGAATTTTTTTGAATTTTGCCAGATCTGAGCATT
TTTACAAGTTTGGGCCAGCTATTGATGTACTTGTGTCTTACCAAAGTCCT
CAAGGCTTGGGATCGTTTGTCGTGGACGTGGTTCCATTTTTACACATTGC
ATCTGTTGGCCAACATGTAATAAATCCATATTATTCTGATTTTGTTTTTA
TGTCTGGTGGTAAAGCCCCTAATTACATTGAAGAAGGCTTTCATGATCCC
ACGATCTATTGGAGGAAGAGCCATTCCAATCTTGAGCACAAACTCTTTCA
ACATTTCAAAGAGAAACTAAGAATACCTTTAATGATTTGGAAAACGTTAG
CTTTGAAAAATTCTTTTTTTAATAAGGCACCTATTGTGAATTCTTTTCAC
CTCAAGAATGTTGTGTTGCTTCTTGCATTTGATCGGTTAGAAACACTTTC
TAAAGAATGGGTCAACGATACTGGAAGTGTCAACTTTGATGATTTTGTTG
ACAAATGGCTTTTCTACCCTTTACCATTGCAAGTAAAAGAAGTTGGAAAG
CGACTGTACAACTTCTTCAGGGCAGGCACTATGCCTTGGGCTTTTCATAA
AAACATTCACGTTAAATTTAAACCAAAAAACAAAGAAATATGTAAAGATT
ACAATTTGAATAGTATGAGAAGTATTTTAGCAGATTATCTCGAGGATATT
ATCAAATCAGACGATTGGTGTAAACTGATTCATGATTCAGAAATAACAGT
CAATATGAACGAATGTCCCTATAGTAGAGTTAAGGGACCCACAAAGTGTA
AACTTATTTGCAAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004401-exon-sc0000044-1575043694:200350..202402 | TCONS_00004401-exon-sc0000044-1575043694:200350..202402 | Clytia hemisphaerica | exon |
| TCONS_00004401-exon-sc0000044-1575043694:199798..200257 | TCONS_00004401-exon-sc0000044-1575043694:199798..200257 | Clytia hemisphaerica | exon |
| TCONS_00004401-exon-sc0000044-1510915933:200350..202402 | TCONS_00004401-exon-sc0000044-1510915933:200350..202402 | Clytia hemisphaerica | exon |
| TCONS_00004401-exon-sc0000044-1510915933:199798..200257 | TCONS_00004401-exon-sc0000044-1510915933:199798..200257 | Clytia hemisphaerica | exon |
| TCONS_00004401-exon-sc0000044-1491911889:200350..202402 | TCONS_00004401-exon-sc0000044-1491911889:200350..202402 | Clytia hemisphaerica | exon |
| TCONS_00004401-exon-sc0000044-1491911889:199798..200257 | TCONS_00004401-exon-sc0000044-1491911889:199798..200257 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:199798..202402 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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