TCONS_00004405 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004405
Unique Name	TCONS_00004405
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	414

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000044:247391..251681-

transcript sequence

>TCONS_00004405 ID=TCONS_00004405|Name=TCONS_00004405|organism=Clytia hemisphaerica|type=transcript|length=414bp
TGCTGAAAAGATGGAGCAAAGACTTTTGATTGATCATTTTCAGATTCGAT
CAACACTATTGCGTAAATCTAACTCGTCAGTCCAGCTGAACCAAAAGATC
ATCAACATGTTACAGGTTGTGCATTAAGAAGAAGGACTTTCAAACGTGTG
TTCGCAGATCGATTTTATCAATGTCTGACTGAGTCGACTTGAAAGAAAAG
AAGGAAACCAAatttaaacacaaagaaaagcaTGTCAAACTTTAATGGCA
CCAAGTATTTGAAGACGTCCGATATATTCACAAGTAATAACCAGAGTAGA
AGTTAAAGACTGTTATTAGACTTTTTCAAATCATATATATTTCATCAAGG
CGTAAAATTTGTACGTAGTTTTTTTCACCCTGTTCAGATACTTGTTTCAG
TTGTTTGCTTCAGA

Run BLAST on NCBI

transcript from alignment at sc0000044:247391..251681-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004405 ID=TCONS_00004405|Name=TCONS_00004405|organism=Clytia hemisphaerica|type=transcript|length=4291bp|location=Sequence derived from alignment at sc0000044:247391..251681- (Clytia hemisphaerica)
TGCTGAAAAGATGGAGCAAAGACTTTTGATTGATCATTTTCAGGTGAGTG
AAATTTCTAAGACGATATTTTCTCTAATAATTGGAATTGGCTAGAAAATT
CTGAAAATTAGATGGCATCATAACATAATGAGTTTCTAAAGTTTCATTTT
TTTGATAAGTTCTTTGGGAAGCAAGTACAAATTTANNNNNNNNNNNNNNN
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CCTCAATCCTGCTTTCTGTTTTTATTTTAGGACGAGATTGAGATATTTTA
GGCTCTTTATCCAATTTTACTCTTGAATTTCTTGCAATTAAGTTTCAGCT
TAGCACTGTTCTTAAATTGTTGTAGCTTCATTACTATCTATTATAAAAAA
GAGCTTGTAGTTATAAAGGTTTTGAGGGTTTTCCACTCTTTCTACTCAAA
ACTTTTGTTTCCTCATTTTGTTTTCCAGATTCGATCAACACTATTGCGTA
AATCTAACTCGTCAGTCCAGCTGAACCAAAAGATCATCAACATGTTACAG
GTAAACCTCATAGATACTAATATGATACAAATGCTTAGATTCATCCATCA
GATCTGGGATCATAGTTTCTAAATACCCTCTTTATTAAGTGCCGAGATTT
TGGGTAAAACCTTTCAAGGGAGAAACCTGTACCCTCAGATTTATATCAAT
AAAGGTGAAATGGAGCTTACATCATGATCTCAAAAAACTTGCTTTGTAGA
CTAAATTATTTCAGCAATTGGGGATAAAAATAATGGACTGAAACTCGATA
GGAATTACTATTCTCATGTTTTTTATGGCTAAGGAATTCAATTCTTTTGT
TTTTAAGTCAGAAGATTCAGTGGGAAGAGAAAAATAGAATAAAATTTTGC
AGTGAGGATCGGTTTATTTGATTATTTTCAATGGGGACAAAAATTAGAGG
ATGATTTTCAACCGGGGCCAATTTTTCCAGTGGGGAGGGGTCCCAGTGGG
TCTGTGTGAAGGTAAAATTAAGGAAGGACAAATTAACACCCTTTGTCCCA
TATGTTAATAAGTTATTTTGGCACACTGCTATCCGGAAGGTTATAGTCAA
TAATTATCCTAAAAAAAAAGACATTCCTTTGTTTGATTTTGTCATATTAT
TTGTAATTATTTTCATAAATTATTATTTTCCTTTCAATCAAGGTTGTGCA
TTAAGAAGAAGGACTTTCAAACGTGTGTTCGCAGATCGATTTTATCAATG
TCTGACTGAGTCGACTTGAAAGAAAAGAAGGAAACCAAATTTAAACACAA
AGAAAAGCATGTCAAACTTTAATGGCACCAAGTATTTGAAGACGTCCGAT
ATATTCACAAGTAATAACCAGAGTAGAAGTTAAAGACTGTTATTAGACTT
TTTCAAATCATATATATTTCATCAAGGCGTAAAATTTGTACGTAGTTTTT
TTCACCCTGTTCAGATACTTGTTTCAGTTGTTTGCTTCAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002464	XLOC_002464	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004405-exon-sc0000044-1575043694:251639..251681	TCONS_00004405-exon-sc0000044-1575043694:251639..251681	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1575043694:248332..248403	TCONS_00004405-exon-sc0000044-1575043694:248332..248403	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1575043694:247391..247689	TCONS_00004405-exon-sc0000044-1575043694:247391..247689	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1510915933:251639..251681	TCONS_00004405-exon-sc0000044-1510915933:251639..251681	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1510915933:248332..248403	TCONS_00004405-exon-sc0000044-1510915933:248332..248403	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1510915933:247391..247689	TCONS_00004405-exon-sc0000044-1510915933:247391..247689	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1491911889:251639..251681	TCONS_00004405-exon-sc0000044-1491911889:251639..251681	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1491911889:248332..248403	TCONS_00004405-exon-sc0000044-1491911889:248332..248403	Clytia hemisphaerica	exon
TCONS_00004405-exon-sc0000044-1491911889:247391..247689	TCONS_00004405-exon-sc0000044-1491911889:247391..247689	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000044	supercontig	sc0000044:247391..251681 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.388226	0	0.0794716	0.233384	0	1.34468	0.955639	0.655896	0.382368	0.175335	0.376898	0.708171	0.774999	0.22086	0.632755	0.417251	0	0	0	0	1.30241	0.268571	0.718166	10.2285	8.48059	0.267515	0.253256	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004405 vs. Swiss-Prot (Human)

BLAST of TCONS_00004405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00004405 (transcript) - C. hemisphaerica