|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004409 ID=TCONS_00004409|Name=TCONS_00004409|organism=Clytia hemisphaerica|type=transcript|length=991bp TAAGCCTCCAAGCTGAACGCACCTAaggaaaaatttcatcaaagaaTATA ACTAAATTGAAGAAACTATAGACAAAATGTTACGACTTTTATTGATTGTA CTTTTGACGACCAGCTTTTTTGCGACGATGACTGATGGCCGACCAGCCCC GTGTACACAGAAACGATGGAAACTATGCAACCCTTCGGAAACAGGCGGAG AAACTGACCTTGTCAAACAGTTACATAACAGATTGGAAAAAATCTTCAAC AGTAAAGGAAAAATCAATTCCGGTGACTAAAAAACAAAAGACTGGGACCA AGAGAAGATTGTGATTGGTGGAGAAAATGCGACATAATGATTGGTCAATA AAGACTACAAATAAAGTATATACCTTGGTAATGGCAGAGTATATCAAAAC CTATTTTGACGACCCAGACGACTTTAACCAATTTTGGAAAACGACGagaa agtccaaaaaccccAAATTTTAAACTACAAACtacaaaaaagcaaaaacc CTGAAAGATTGACGCATTGGCAATGAAAGGAAAACTGCAAAAGCATTATC ACGTGCTAAATTAAGTTTTACGTCATCGAAACGTGATAACAAATGAACGT GAAATCTCAGCCAATCAAATGACACGTAAATACATCGACATAGAAAAACT TTCTTATTGAACGTGATATTTGACAAACTATgtattggatttttttccaa tcttgttttttttttttattagctttccttattttccttaaaaaaaatta gggTGATTAAAGAAGCTATGACGTCTAGCCTATATTATAGACTAGTAAAC AAACttgaaatattatttatttttttgttaaattattCGATAATAATTTA TTATGTATTTATTTTACAAACCTTAATTTATTTTCGCccaaagaattttt aaaattattttttagtcaAAGTCAGATGATAATTTATAAATAAAAGAGAG AATTTAGAAAgtttattttattgaatttagaaaaataattt Run BLAST on NCBI transcript from alignment at sc0000044:366654..367890- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004409 ID=TCONS_00004409|Name=TCONS_00004409|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at sc0000044:366654..367890- (Clytia hemisphaerica) TAAGCCTCCAAGCTGAACGCACCTAAGGAAAAATTTCATCAAAGAATATA
ACTAAATTGAAGAAACTATAGACAAAATGTTACGACTTTTATTGATTGTA
CTTTTGACGACCAGCTTTTTTGCGACGATGACTGATGGCCGACCAGCCCC
GTGTACACAGAAACGATGGAAACTATGCAACCCTTCGGAAACAGGCGGAG
AAACTGGTAAGTTGGTGTTTTACAATAAGATTTTTAGTCTATAAATTGCG
TTTTTAAGTTGACATCATATTTAAGAAATTTACATTCTTCTGGAATACGT
CGGTTGCAAGTTGCAGTCAATTGAAATATTTTGAAATTTTGAAATTTTGA
GGATTCACTAAACATTTTAAGAGGAAATGTACAGACCTTGAACTGACACC
CACACATCCTGAAATTGCAGTTCATTGACACATTCTTTTCTTCTTTTTCC
AGACCTTGTCAAACAGTTACATAACAGATTGGAAAAAATCTTCAACAGTA
AAGGAAAAATCAATTCCGGTGACTAAAAAACAAAAGACTGGGACCAAGAG
AAGATTGTGATTGGTGGAGAAAATGCGACATAATGATTGGTCAATAAAGA
CTACAAATAAAGTATATACCTTGGTAATGGCAGAGTATATCAAAACCTAT
TTTGACGACCCAGACGACTTTAACCAATTTTGGAAAACGACGAGAAAGTC
CAAAAACCCCAAATTTTAAACTACAAACTACAAAAAAGCAAAAACCCTGA
AAGATTGACGCATTGGCAATGAAAGGAAAACTGCAAAAGCATTATCACGT
GCTAAATTAAGTTTTACGTCATCGAAACGTGATAACAAATGAACGTGAAA
TCTCAGCCAATCAAATGACACGTAAATACATCGACATAGAAAAACTTTCT
TATTGAACGTGATATTTGACAAACTATGTATTGGATTTTTTTCCAATCTT
GTTTTTTTTTTTTATTAGCTTTCCTTATTTTCCTTAAAAAAAATTAGGGT
GATTAAAGAAGCTATGACGTCTAGCCTATATTATAGACTAGTAAACAAAC
TTGAAATATTATTTATTTTTTTGTTAAATTATTCGATAATAATTTATTAT
GTATTTATTTTACAAACCTTAATTTATTTTCGCCCAAAGAATTTTTAAAA
TTATTTTTTAGTCAAAGTCAGATGATAATTTATAAATAAAAGAGAGAATT
TAGAAAGTTTATTTTATTGAATTTAGAAAAATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004409-exon-sc0000044-1575043694:367685..367890 | TCONS_00004409-exon-sc0000044-1575043694:367685..367890 | Clytia hemisphaerica | exon |
TCONS_00004409-exon-sc0000044-1575043694:366654..367438 | TCONS_00004409-exon-sc0000044-1575043694:366654..367438 | Clytia hemisphaerica | exon |
TCONS_00004409-exon-sc0000044-1510915933:367685..367890 | TCONS_00004409-exon-sc0000044-1510915933:367685..367890 | Clytia hemisphaerica | exon |
TCONS_00004409-exon-sc0000044-1510915933:366654..367438 | TCONS_00004409-exon-sc0000044-1510915933:366654..367438 | Clytia hemisphaerica | exon |
TCONS_00004409-exon-sc0000044-1491911889:367685..367890 | TCONS_00004409-exon-sc0000044-1491911889:367685..367890 | Clytia hemisphaerica | exon |
TCONS_00004409-exon-sc0000044-1491911889:366654..367438 | TCONS_00004409-exon-sc0000044-1491911889:366654..367438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000044 | supercontig | sc0000044:366654..367890 - |
Blast
The following BLAST results are available for this feature:
|