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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004414 ID=TCONS_00004414|Name=TCONS_00004414|organism=Clytia hemisphaerica|type=transcript|length=1263bp
tttagagaataaataaaaagaaaaatggcagCAAATAGATCCATCCGCAA
CATTTTTTATGCTCCAAACATGAGACACCTAGCAAAACAATTTTGCATCC
ATCAACGTTCAATGGCTACAATGACTTCAAGTAACCAAAtctcaaaatca
tcaaaagttgGAATCTGGAATAATGACCCTTCATTTCCTATGCCTGGAAA
TATTGGTGTAGATTTGAACGCCCTTGATGCGTCCTCTGAGATTAAAGCCT
CTACTTCATCACCACCTCCATACCAGAGTTTAGCATCTGCTTTTCTGGAT
CTGGAGGATGAGGCTATGCGTaaaaatcgcattttgaatcAATTTGTTAG
TGAAAGTCTTGAAGATGGAGAAGAGGTTGACCTCAGTGAAGACAAAGCAA
CCACCTCTTATCTAGATCATAATGTTGAATGTAAAATTCAATCATGCCCT
GATCATCTTATGAAGAGCTTTACAAGCTTATTTGATAGTTTTCCGGCAAA
TGAGCAGTTAACTGTTATTACGCTAAGCCAGAAAACAGAAAATGATATGA
CAACTTGGTCTGAAGAAGTTGAAAATGAAAGAGAAGAACTAACAGGTATT
TTCATTGATAACGCCAAAGAAATTTGCtctaaaattaaagaaaatggtCA
TTGGGCTGATTTCATTGAACCAGCCTCTGGTCACGCATATTACAGTTCTC
ATCGTAATGAAACATTATTTGAAACGGATGACAGGCTTAATCAACTTggt
tttgaaattgaagatcTTGGCTGTTGTAAAGTACTTTTGCATAATGAATG
GaaaagcaatgtttttgttggTATCATCTTCACCAATGCTCCTGCCGATA
GCCATTTCTTTGGAAGTCTTTGAGTTAGAAacaaaattttgcatttctgt
ATAACCATGCATACTACATGATGGATATCaattattttatatttcaaatt
ttaagtttgaacCACATACTTTGTATTTTATAAGTCAATTAATCTATTTT
ATAGAAcccttttaaaatgaaaatcttttgggagTTTATTATCGAAAAAT
CAATGAAGGTATATCTTATTAAATTACTAAACTGTCTACCCTACCTCTCG
AAAAAAGATCCCCTTCGAAAGAAATTTGAGTGTTTTTTAACATACGGAta
gaaacattctttcaagaaataATAACTCTTTTATAGGAAAATAATTTAGA
CTTTTGTGATTTCCGAATCCTTCAGACATTGGATTGATTTTTAAAGGACA
TTTTAAAGGTGCC Run BLAST on NCBI protein sequence of TCONS_00004414-protein >TCONS_00004414-protein ID=TCONS_00004414-protein|Name=TCONS_00004414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MAANRSIRNIFYAPNMRHLAKQFCIHQRSMATMTSSNQISKSSKVGIWNN
DPSFPMPGNIGVDLNALDASSEIKASTSSPPPYQSLASAFLDLEDEAMRK
NRILNQFVSESLEDGEEVDLSEDKATTSYLDHNVECKIQSCPDHLMKSFT
SLFDSFPANEQLTVITLSQKTENDMTTWSEEVENEREELTGIFIDNAKEI
CSKIKENGHWADFIEPASGHAYYSSHRNETLFETDDRLNQLGFEIEDLGC
CKVLLHNEWKSNVFVGIIFTNAPADSHFFGSL Run BLAST on NCBI transcript from alignment at sc0000044:467808..469132- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004414 ID=TCONS_00004414|Name=TCONS_00004414|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at sc0000044:467808..469132- (Clytia hemisphaerica)
TTTAGAGAATAAATAAAAAGAAAAATGGCAGCAAATAGATCCATCCGCAA
CATTTTTTATGCTCCAAACATGAGACACCTAGCAAAACAATTTTGCATCC
ATCAACGTTCAATGGCTACAATGACTTCAAGTAACCAAATCTCAAAATCA
TCAAAAGTTGGAATCTGGAATAATGACCCTTCATTTCCTATGCCTGGAAA
TATTGGTGTAGATTTGAACGCCCTTGATGCGTCCTCTGAGATTAAAGCCT
CTACTTCATCACCACCTCCATACCAGAGTTTAGCATCTGCTTTTCTGGAT
CTGGAGGATGAGGCTATGCGTAAAAATCGCATTTTGAATCAATTTGTTAG
TGAAAGTCTTGAAGATGGAGAAGAGGTTGACCTCAGTGAAGACAAAGCAA
CCACCTCTTATCTAGATCATAATGTTGAATGTAAAATTCAATCATGCCCT
GATCATCTTATGAAGAGCTTTACAAGCTTATTTGATAGTTTTCCGGCAAA
TGAGCAGTTAACTGTTATTACGCTAAGCCAGAAAACAGAAAATGATATGA
CAACTTGGTCTGAAGAAGTTGAAAATGAAAGAGAAGAACTAACAGGTATT
TTCATTGATAACGCCAAAGAAATTTGCTCCNTGAAAATGAAAGAGAAGAA
CTAACAGGTATTTTCATTGATAACGCCAAAGACATTTGCTCTAAAATTAA
AGAAAATGGTCATTGGGCTGATTTCATTGAACCAGCCTCTGGTCACGCAT
ATTACAGTTCTCATCGTAATGAAACATTATTTGAAACGGATGACAGGCTT
AATCAACTTGGTTTTGAAATTGAAGATCTTGGCTGTTGTAAAGTACTTTT
GCATAATGAATGGAAAAGCAATGTTTTTGTTGGTATCATCTTCACCAATG
CTCCTGCCGATAGCCATTTCTTTGGAAGTCTTTGAGTTAGAAACAAAATT
TTGCATTTCTGTATAACCATGCATACTACATGATGGATATCAATTATTTT
ATATTTCAAATTTTAAGTTTGAACCACATACTTTGTATTTTATAAGTCAA
TTAATCTATTTTATAGAACCCTTTTAAAATGAAAATCTTTTGGGAGTTTA
TTATCGAAAAATCAATGAAGGTATATCTTATTAAATTACTAAACTGTCTA
CCCTACCTCTCGAAAAAAGATCCCCTTCGAAAGAAATTTGAGTGTTTTTT
AACATACGGATAGAAACATTCTTTCAAGAAATAATAACTCTTTTATAGGA
AAATAATTTAGACTTTTGTGATTTCCGAATCCTTCAGACATTGGATTGAT
TTTTAAAGGACATTTTAAAGGTGCC Coding sequence (CDS) from alignment at sc0000044:467808..469132- >TCONS_00004414 ID=TCONS_00004414|Name=TCONS_00004414|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000044:467808..469132- (Clytia hemisphaerica)
ATTTGCTCTAAAATTAAAGAAAATGGTCATTGGGCTGATTTCATTGAACC
AGCCTCTGGTCACGCATATTACAGTTCTCATCGTAATGAAACATTATTTG
AAACGGATGACAGGCTTAATCAACTTGGTTTTGAAATTGAAGATCTTGGC
TGTTGTAAAGTACTTTTGCATAATGAATGGAAAAGCAATGTTTTTGTTGG
TATCATCTTCACCAATGCTCCTGCCGATAGCCATTTCTTTGGAAGTCTTT
GAATGGCAGCAAATAGATCCATCCGCAACATTTTTTATGCTCCAAACATG
AGACACCTAGCAAAACAATTTTGCATCCATCAACGTTCAATGGCTACAAT
GACTTCAAGTAACCAAATCTCAAAATCATCAAAAGTTGGAATCTGGAATA
ATGACCCTTCATTTCCTATGCCTGGAAATATTGGTGTAGATTTGAACGCC
CTTGATGCGTCCTCTGAGATTAAAGCCTCTACTTCATCACCACCTCCATA
CCAGAGTTTAGCATCTGCTTTTCTGGATCTGGAGGATGAGGCTATGCGTA
AAAATCGCATTTTGAATCAATTTGTTAGTGAAAGTCTTGAAGATGGAGAA
GAGGTTGACCTCAGTGAAGACAAAGCAACCACCTCTTATCTAGATCATAA
TGTTGAATGTAAAATTCAATCATGCCCTGATCATCTTATGAAGAGCTTTA
CAAGCTTATTTGATAGTTTTCCGGCAAATGAGCAGTTAACTGTTATTACG
CTAAGCCAGAAAACAGAAAATGATATGACAACTTGGTCTGAAGAAGTTGA
AAATGAAAGAGAAGAACTAACAGGTATTTTCATTGATAACGCCAAAGAAA
TTTGCTCTAAAATTAAAGAAAATGGTCATTGGGCTGATTTCATTGAACCA
GCCTCTGGTCACGCATATTACAGTTCTCATCGTAATGAAACATTATTTGA
AACGGATGACAGGCTTAATCAACTTGGTTTTGAAATTGAAGATCTTGGCT
GTTGTAAAGTACTTTTGCATAATGAATGGAAAAGCAATGTTTTTGTTGGT
ATCATCTTCACCAATGCTCCTGCCGATAGCCATTTCTTTGGAAGTCTTTG
AATGGCAGCAAATAGATCCATCCGCAACATTTTTTATGCTCCAAACATGA
GACACCTAGCAAAACAATTTTGCATCCATCAACGTTCAATGGCTACAATG
ACTTCAAGTAACCAAATCTCAAAATCATCAAAAGTTGGAATCTGGAATAA
TGACCCTTCATTTCCTATGCCTGGAAATATTGGTGTAGATTTGAACGCCC
TTGATGCGTCCTCTGAGATTAAAGCCTCTACTTCATCACCACCTCCATAC
CAGAGTTTAGCATCTGCTTTTCTGGATCTGGAGGATGAGGCTATGCGTAA
AAATCGCATTTTGAATCAATTTGTTAGTGAAAGTCTTGAAGATGGAGAAG
AGGTTGACCTCAGTGAAGACAAAGCAACCACCTCTTATCTAGATCATAAT
GTTGAATGTAAAATTCAATCATGCCCTGATCATCTTATGAAGAGCTTTAC
AAGCTTATTTGATAGTTTTCCGGCAAATGAGCAGTTAACTGTTATTACGC
TAAGCCAGAAAACAGAAAATGATATGACAACTTGGTCTGAAGAAGTTGAA
AATGAAAGAGAAGAACTAACAGGTATTTTCATTGATAACGCCAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004414-exon-sc0000044-1575043694:468512..469132 | TCONS_00004414-exon-sc0000044-1575043694:468512..469132 | Clytia hemisphaerica | exon |
| TCONS_00004414-exon-sc0000044-1575043694:467808..468449 | TCONS_00004414-exon-sc0000044-1575043694:467808..468449 | Clytia hemisphaerica | exon |
| TCONS_00004414-exon-sc0000044-1510915933:468512..469132 | TCONS_00004414-exon-sc0000044-1510915933:468512..469132 | Clytia hemisphaerica | exon |
| TCONS_00004414-exon-sc0000044-1510915933:467808..468449 | TCONS_00004414-exon-sc0000044-1510915933:467808..468449 | Clytia hemisphaerica | exon |
| TCONS_00004414-exon-sc0000044-1491911889:468512..469132 | TCONS_00004414-exon-sc0000044-1491911889:468512..469132 | Clytia hemisphaerica | exon |
| TCONS_00004414-exon-sc0000044-1491911889:467808..468449 | TCONS_00004414-exon-sc0000044-1491911889:467808..468449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:467808..469132 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019362 | MMADHC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009235 | cobalamin metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009235 |
cobalamin metabolic process |
Blast
BLAST of TCONS_00004414 vs. Swiss-Prot (Human)
Match: MMAD (Methylmalonic aciduria and homocystinuria type D protein, mitochondrial OS=Homo sapiens GN=MMADHC PE=1 SV=2) HSP 1 Score: 194.512 bits (493), Expect = 8.782e-58 Identity = 103/235 (43.83%), Postives = 142/235 (60.43%), Query Frame = 1
Query: 175 DPSFPMPGNIGVDLNALDASSEIKASTSSPPPYQSLASAFLDLEDEAMRKNR---ILNQFVSESLEDGEEVDLSEDKATTSYLDHNVECKIQSCPDHLMKSFTSLFDSFPANEQLTVITLSQKTENDMTTWSEEVENEREELTGIFIDNAKEICSKIKENGHWADFIEPASGHAYYSSHRNETLFETDDRLNQLGFEIEDLGCCKVLLHNEWKSNVFVGIIFTNAPADSHFFGSL 870
D F +PGNIG D + +S+ K+ P D+ E + R ++ Q+V+E + V+ + A T + VEC IQ+CP+ L K F SLF AN +L ++T++QKT+NDMT WSEEVE ERE L FI+ AKEIC ++ G+WADFI+P+SG A++ + N TLFETD+R LGF ++DLGCCKV+ H+ W ++V VG IFTNA DSH L
Sbjct: 69 DQRFQLPGNIGFDCHLNGTASQKKSLVHKTLP---------DVLAEPLSSERHEFVMAQYVNEFQGNDAPVEQEINSAETYFESARVECAIQTCPELLRKDFESLFPEV-ANGKLMILTVTQKTKNDMTVWSEEVEIEREVLLEKFINGAKEICYALRAEGYWADFIDPSSGLAFFGPYTNNTLFETDERYRHLGFSVDDLGCCKVIRHSLWGTHVVVGSIFTNATPDSHIMKKL 293
The following BLAST results are available for this feature:
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