TCONS_00004415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004415
Unique NameTCONS_00004415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004415 ID=TCONS_00004415|Name=TCONS_00004415|organism=Clytia hemisphaerica|type=transcript|length=1122bp
CCCAAACTGAGAAAGTGCACGTAAAGGTGCTGAAATCATCGATTATATGT
AATTAAGAAGCCTTGTTAAATAAGAGAGAGACATATATAAGTCTCTTACT
AATCGACACGTTAGGTCAGCTAAGGTGAAAGTACTGACAAGTTGACGATA
AGAGTCATAAATAAGTATTCAAACAAGTGAAAATTTTGTTAAACGCACAA
GggTTTCTAAATTCACTTCATCatgtctgaaaaaaatgaaaaagaagaac
tacaaaaagctaaagaaaactttgcaaaagaacaaaaattgatgaaagaA
CTCATAGTCAAGAGTGAAGAGCACGAGCAATCGGTTACCGTAAAAACTGA
CCGTATAAAAACAACAGGACGTCTATACGAAGATACCATTACCGAGGACC
TACATTCTACCGCTGGAAATGGGGATATAGAAACTCTGAAATTTCTCCTC
AAGAAAGGTCTTTATGTCAATTCGAAGGATATTAATGGAGCCACGCCCCT
TTTTTGTGCGTGTAAAGAGAACCAGTTACATGCAGCTGTTTTGTTGATTG
GACACGGAGCCAATGTGAATAGTAGTTGTAATGAAGGTTGTACACCACTC
ATGTATGCAGCTTGGAAAGGACATGCCGAAATTGTTAGCTTACTCATCAA
ACATCAAGCCGACGTGAAAGCTATTGACGACAATGAAAATACCGCCCTTC
ATTTCGCCGCCCTGGGTGGTCAACAAGTTGTTTGTTTATTGCTCCGCAAA
GCGGGCGCTAATAAGGGTGccaagaataaaaaaaagaaaacgccCTCTGA
TAATTTGGAGACTTTTAGTCAGGAATTGAAGGTTTCGCTGACATCGAGTT
TTCCAATGGAGCCggttcattttgaaaaatcgaaaagttTGTTCGGTATG
AAACGCATTGCGCGAGAATTTTCAAAGTTGGATTAAAAACTTATGAAAAG
GAGATAATGACATGAACATATTATTAATGGGCTTGATCGATCAtatatgt
atatattttgaaagataaatccacgctttttttataagaaccagtaaatt
ttgactCAGGCTGAGCTGTTCttaattcatcaaaattttcagccTTGAAT
GTTCTTgcgatgttcttaacat
Run BLAST on NCBI

protein sequence of TCONS_00004415-protein

>TCONS_00004415-protein ID=TCONS_00004415-protein|Name=TCONS_00004415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MSEKNEKEELQKAKENFAKEQKLMKELIVKSEEHEQSVTVKTDRIKTTGR
LYEDTITEDLHSTAGNGDIETLKFLLKKGLYVNSKDINGATPLFCACKEN
QLHAAVLLIGHGANVNSSCNEGCTPLMYAAWKGHAEIVSLLIKHQADVKA
IDDNENTALHFAALGGQQVVCLLLRKAGANKGAKNKKKKTPSDNLETFSQ
ELKVSLTSSFPMEPVHFEKSKSLFGMKRIAREFSKLD
Run BLAST on NCBI

transcript from alignment at sc0000044:517156..520418-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004415 ID=TCONS_00004415|Name=TCONS_00004415|organism=Clytia hemisphaerica|type=transcript|length=3263bp|location=Sequence derived from alignment at sc0000044:517156..520418- (Clytia hemisphaerica)
CCCAAACTGAGAAAGTGCACGTAAAGGTGCTGAAATCATCGATTATATGT
AATTAAGAAGCCTTGTTAAATAAGAGAGAGACATATATAAGTCTCTTACT
AATCGACACGTTAGGTCAGCTAAGGTGAAAGTACTGACAAGTTGACGATA
AGAGTCATAAATAAGTATTCAAACAAGTGAAAATTTTGTTAAACGCACAA
GGTATGTAGAATTGAACTTAATGTAATTAATGTAATATATTTTTTAATTT
TTTGTGTCAGAATGGAATTTGAGTTTGATGCCTGCATGCCTGAAAGTGGT
CTGTAAATTTAAAAGTAACTGGCAGATAATACTAATTAATCAGATAAATC
TTCGCAAAAAATTTAATTTTGCCAGTCAGAAATAAACAATATTTTCTGGA
TTTTATCGAGGTTATGAAAAGCTTCAAATAGATTCAATTTAGATTGTGGA
TTTAATTTTGCGCGATCAGCATGCTTACGCAATTTCGCGATTTATTTAAT
TTTCGCGAAAGTTTGTCCGAATAAAAGGCTAAGCATCTGATTATGTAGTT
AAAAAAGATATTAAGTTAAGTCTTAGAAGGAAACAAAACTTTTTATTCTT
TTAGGGTTTCTAAATTCACTTCATCATGTCTGAAAAAAATGAAAAAGAAG
AACTACAAAAAGCTAAAGAAAACTTTGCAAAAGAACAAAAATTGATGAAA
GAACTCATAGTCAAGAGTGAAGAGCACGAGCAATCGGTTACCGTAAAAAC
TGACCGTATAAAAACAACAGGACGTCTATACGAAGATACCATTACCGAGG
ACCTACATTCTACCGCTGGAAATGGGGATATAGAAACTCTGAAATTTCTC
CTCAAGAAAGGTCTTTATNAACCGCTGGAAATGGGGATATAGAAACTCTG
AAATTTCTGCTCAAGAAAGGTCTTTATGTCAATTCGAAGGATATTAATGG
AGCCACGCCCCTTTTTTGTGCGTGTAAAGAGAACCAGTTACATGCAGCTG
TTTTGTTGATTGGACACGGAGCCAATGTGAATAGTAGTTGTAATGAAGGT
ATGTTTACAAACTCGTATCCAGGTCCTTAGCTCACTTTTTGATAATTTTG
ATATCGCTCACAAAAGAATTGTATCACGTTCATCAGTAAAATGAAAAAGT
GGTGAAAGTGGTTCTGGATACAAGATTGGATATGGGTATGTTTATTGATT
TTCTAGGTTTTTAGGAGGGGTGGTTATTGTTTTAGTACACTCTTAAAAAA
ACAAGCAACATGCTGAATGGACCTACCTGATGATGAAAGTTAGATAGCAA
TGCGAAAAGAAAAATGAAAAAAATCAGTCAGAAAACATAGCGTTTAGCGA
AAATGCATAATGATGATGGGGGAGAGGGAAGGGTTGTAGGTAAAAAATAA
ATAAAGTTCTGGTCGCAAAAGTCGGTTTTATTGACAATTGAATCATGCTT
GATTGTGAGAATTGTTCACAATAATGTTTTTGTGAGAAAAACATAGAAAT
ATAAGGAAAAAATCCAATGAAAATCTGCAAAAACGGCGATTTCCGGCATT
TTCAACCGGAAAAAATTTTTTCTCAAAAATCGAACTCAGCCATGTTTTGA
GCATTGCGAATACGCATCTTTGTGCAAAAAATCAGAAAAAAACTAAAAAT
GCAAATTCGAGAAAATGTCAAAAAACCGGTTTGTCCGGCATATTACCGGC
ATTTTCGGCCGGAAAGAAATGTTTTTCGAAAATCGGGCTCCGTCACATTT
TAGGTATTGTCATATTGCATCAGTGTGCAAAATTTCATAAAAAAATGTAA
AGTACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTACAGCTTGAGAAATTCAAGAAATACTGTCTTTCCGGCGAAAA
TAGGTTGTTCCGGCGATTTTTAAATAGTTCCGGCTTCAAAAATCAATTTT
ATTAAAAAGTGAAACATGCTTGATGGTGGGCATTGCTATTAATAATGTTT
TTGAAGGAAAAAACAACCAATTATAAGGAAAAAGTCCAATGGAAATCTAG
AAAAACGGCGATTTCCGGCATATTTCAGGCATTTCCCGCAGGAAAATTTT
TTCTCAAAAATCGGACTCGGCCATGTTTTGGGCATTGTTTATACCAAGGA
CACAAAACAGTTTTTCCGGCATATTTCCGCCATTTTCGGCCGGAAATGAA
TTTTTTTCGAAAATCGGGCTCCGTCACAATTTAGGTATTGACATTTTGCA
TCATTGTGCAAAAAAATAGAAAAAACTAATGAGCCGATCCCAAGAAAAGC
TGGCAACAGACGAACGAACGAACGAACAGACGAACGAACGGACAAGGGTT
AATTTAAAGGACTACCTTAGGTAGGTCCAAAAAGAACAGTAAGGCTCAAA
TCCGTAAAAAATAAAGATAATACTAAGGATAGCTCGAAGCTGGGGGAAAT
TCATGATAATAAATGATTCGTGCTTAATAATGCTTAAAAAACTGGACCTA
GTAGTTTAAGAAACACAAACAATGAACAAAATTTCGCTTTTTTAAAGGTT
TTTGTATTGTTGAAATGGCAGAAGTATCCAAAAATGACCAAGAATTCGTC
AATAATTTCATTGTTCAAATTCGACCCTATTGGCAAATACCTGGCATTTT
CTTGGGTGCTACCTTATAAAACACTACGTCGTTAATTATCATGAATTCTA
ACTTATATTTTGTCTCCTCACACGAAGGTTGTACACCACTCATGTATGCA
GCTTGGAAAGGACATGCCGAAATTGTTAGCTTACTCATCAAACATCAAGC
CGACGTGAAAGCTATTGACGACAATGAAAATACCGCCCTTCATTTCGCCG
CCCTGGGTGGTCAACAAGTTGTTTGTTTATTGCTCCGCAAAGCGGGCGCT
AATAAGGGTGCCAAGAATAAAAAAAAGAAAACGCCCTCTGATAATTTGGA
GACTTTTAGTCAGGAATTGAAGGTTTCGCTGACATCGAGTTTTCCAATGG
AGCCGGTTCATTTTGAAAAATCGAAAAGTTTGTTCGGTATGAAACGCATT
GCGCGAGAATTTTCAAAGTTGGATTAAAAACTTATGAAAAGGAGATAATG
ACATGAACATATTATTAATGGGCTTGATCGATCATATATGTATATATTTT
GAAAGATAAATCCACGCTTTTTTTATAAGAACCAGTAAATTTTGACTCAG
GCTGAGCTGTTCTTAATTCATCAAAATTTTCAGCCTTGAATGTTCTTGCG
ATGTTCTTAACAT

Coding sequence (CDS) from alignment at sc0000044:517156..520418-

>TCONS_00004415 ID=TCONS_00004415|Name=TCONS_00004415|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000044:517156..520418- (Clytia hemisphaerica)
GTTGTACACCACTCATGTATGCAGCTTGGAAAGGACATGCCGAAATTGTT
AGCTTACTCATCAAACATCAAGCCGACGTGAAAGCTATTGACGACAATGA
AAATACCGCCCTTCATTTCGCCGCCCTGGGTGGTCAACAAGTTGTTTGTT
TATTGCTCCGCAAAGCGGGCGCTAATAAGGGTGCCAAGAATAAAAAAAAG
AAAACGCCCTCTGATAATTTGGAGACTTTTAGTCAGGAATTGAAGGTTTC
GCTGACATCGAGTTTTCCAATGGAGCCGGTTCATTTTGAAAAATCGAAAA
GTTTGTTCGGTATGAAACGCATTGCGCGAGAATTTTCAAAGTTGGATTAA
GTCTTTATGTCAATTCGAAGGATATTAATGGAGCCACGCCCCTTTTTTGT
GCGTGTAAAGAGAACCAGTTACATGCAGCTGTTTTGTTGATTGGACACGG
AGCCAATGTGAATAGTAGTTGTAATGAAGATGTCTGAAAAAAATGAAAAA
GAAGAACTACAAAAAGCTAAAGAAAACTTTGCAAAAGAACAAAAATTGAT
GAAAGAACTCATAGTCAAGAGTGAAGAGCACGAGCAATCGGTTACCGTAA
AAACTGACCGTATAAAAACAACAGGACGTCTATACGAAGATACCATTACC
GAGGACCTACATTCTACCGCTGGAAATGGGGATATAGAAACTCTGAAATT
TCTCCTCAAGAAAGGTTGTACACCACTCATGTATGCAGCTTGGAAAGGAC
ATGCCGAAATTGTTAGCTTACTCATCAAACATCAAGCCGACGTGAAAGCT
ATTGACGACAATGAAAATACCGCCCTTCATTTCGCCGCCCTGGGTGGTCA
ACAAGTTGTTTGTTTATTGCTCCGCAAAGCGGGCGCTAATAAGGGTGCCA
AGAATAAAAAAAAGAAAACGCCCTCTGATAATTTGGAGACTTTTAGTCAG
GAATTGAAGGTTTCGCTGACATCGAGTTTTCCAATGGAGCCGGTTCATTT
TGAAAAATCGAAAAGTTTGTTCGGTATGAAACGCATTGCGCGAGAATTTT
CAAAGTTGGATTAAGTCTTTATGTCAATTCGAAGGATATTAATGGAGCCA
CGCCCCTTTTTTGTGCGTGTAAAGAGAACCAGTTACATGCAGCTGTTTTG
TTGATTGGACACGGAGCCAATGTGAATAGTAGTTGTAATGAAGATGTCTG
AAAAAAATGAAAAAGAAGAACTACAAAAAGCTAAAGAAAACTTTGCAAAA
GAACAAAAATTGATGAAAGAACTCATAGTCAAGAGTGAAGAGCACGAGCA
ATCGGTTACCGTAAAAACTGACCGTATAAAAACAACAGGACGTCTATACG
AAGATACCATTACCGAGGACCTACATTCTACCGCTGGAAATGGGGATATA
GAAACTCTGAAATTTCTCCTCAAGAAAGGTTGTACACCACTCATGTATGC
AGCTTGGAAAGGACATGCCGAAATTGTTAGCTTACTCATCAAACATCAAG
CCGACGTGAAAGCTATTGACGACAATGAAAATACCGCCCTTCATTTCGCC
GCCCTGGGTGGTCAACAAGTTGTTTGTTTATTGCTCCGCAAAGCGGGCGC
TAATAAGGGTGCCAAGAATAAAAAAAAGAAAACGCCCTCTGATAATTTGG
AGACTTTTAGTCAGGAATTGAAGGTTTCGCTGACATCGAGTTTTCCAATG
GAGCCGGTTCATTTTGAAAAATCGAAAAGTTTGTTCGGTATGAAACGCAT
TGCGCGAGAATTTTCAAAGTTGGATTAAGTCTTTATGTCAATTCGAAGGA
TATTAATGGAGCCACGCCCCTTTTTTGTGCGTGTAAAGAGAACCAGTTAC
ATGCAGCTGTTTTGTTGATTGGACACGGAGCCAATGTGAATAGTAGTTGT
AATGAAGATGTCTGAAAAAAATGAAAAAGAAGAACTACAAAAAGCTAAAG
AAAACTTTGCAAAAGAACAAAAATTGATGAAAGAACTCATAGTCAAGAGT
GAAGAGCACGAGCAATCGGTTACCGTAAAAACTGACCGTATAAAAACAAC
AGGACGTCTATACGAAGATACCATTACCGAGGACCTACATTCTACCGCTG
GAAATGGGGATATAGAAACTCTGAAATTTCTCCTCAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002470XLOC_002470Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004415-proteinTCONS_00004415-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004415-exon-sc0000044-1575043694:520218..520418TCONS_00004415-exon-sc0000044-1575043694:520218..520418Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1575043694:519559..519814TCONS_00004415-exon-sc0000044-1575043694:519559..519814Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1575043694:519371..519499TCONS_00004415-exon-sc0000044-1575043694:519371..519499Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1575043694:517156..517691TCONS_00004415-exon-sc0000044-1575043694:517156..517691Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1510915933:520218..520418TCONS_00004415-exon-sc0000044-1510915933:520218..520418Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1510915933:519559..519814TCONS_00004415-exon-sc0000044-1510915933:519559..519814Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1510915933:519371..519499TCONS_00004415-exon-sc0000044-1510915933:519371..519499Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1510915933:517156..517691TCONS_00004415-exon-sc0000044-1510915933:517156..517691Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1491911889:520218..520418TCONS_00004415-exon-sc0000044-1491911889:520218..520418Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1491911889:519559..519814TCONS_00004415-exon-sc0000044-1491911889:519559..519814Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1491911889:519371..519499TCONS_00004415-exon-sc0000044-1491911889:519371..519499Clytia hemisphaericaexon
TCONS_00004415-exon-sc0000044-1491911889:517156..517691TCONS_00004415-exon-sc0000044-1491911889:517156..517691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:517156..520418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.838568	1.10296	0.331879	0.903938	0.817841	1.28369	0.389848	0.935413	6.3524	16.4816	1.90492	2.148	2.75662	3.34719	0.540772	0.132819	0.227633	0.118597	7.08965	19.7011	0.341	0.824651	1.55367	2.65979	22.5285	39.9776	173.343	167.231	1.4986	0.993016
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00004415 vs. Swiss-Prot (Human)
Match: ANK3 (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.514e-17
Identity = 50/125 (40.00%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:  382 DTITED----LHSTAGNGDIETLKFLLKKGLYVNSKDINGATPLFCACKENQLHAAVLLIGHGANVNSSCNEGCTPLMYAAWKGHAEIVSLLIKHQADVKAIDDNENTALHFAALGGQQVVCLLL 744
            D +T D    LH  A  G  +  K LL K    N+K +NG TPL  ACK+N++    LL+ HGA++ +    G TP+  AA+ GH  IVS L+ H A     +    TALH AA  GQ  V   L
Sbjct:  361 DDVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYL 485
The following BLAST results are available for this feature:
BLAST of TCONS_00004415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK31.514e-1740.00Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3[more]
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