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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004421 ID=TCONS_00004421|Name=TCONS_00004421|organism=Clytia hemisphaerica|type=transcript|length=2280bp
cagaactcagaaaataaaaaagttaacaaaatgATGCCTAATGCAAAGCG
TCAAAAAGTGGCAGTGAATAAAGATGATGAAATATCTCAACGAGGGACAA
AACAATCAAATATTCCATCCTTGATGGATTTAACCTTTGGAAATAAGGTA
CAAAATCTGGAAACAACTGAGACCAATCTTGGTGCACGAGTACAACCTCC
GAAGAAACCTCCAAGTGGTGTACAGCGAAAGAAGACTGGCAAACAGGCCA
AAAGAAGGGAAGCCTTccagaaaattattaaagaagaTGTTTCAGCTCAA
ATTGATACTAATCAGAAATTGAGAGGAAGAGGGAAAAATGTTCTACAAAA
AATGGAAGGTGCCACAAATGGTCCATTGAGTGTCCTTCACGATTGCATGC
AATATGGTATCAAAGCGAAAGTTTGGGTCAGGCGTTACAAGGGTTTACGT
GGTTGTTTGACTGGATATATTGCTGCTTTTGACCATCATATGAACCTGGC
TTTGATTGACGTGGAAGAAGTCTATACATTAGAAACATGGATGGTTGGCG
AACCGTtgaagaaataccaaaaaaaagtcttaaaaaaacGTGAAGAAAAG
TGTCAACTAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAACCGTCTAC
AGGCGCTACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGATTATCTGA
AGAAACTAACGCAGTCTTTGCGACAAAATACATCATCTCCTACATTGTTT
GCCAACCTTCACCGAAACTCAGCAATGACAACCAATAAGCCATTAGAACA
AGAACGAAAAATCGTAAGTGGGCCAACAGTCGATAAAAACCCAGACTCCA
CCATAGATAAGGATTCTAATATTGCTGTTAAAACTTCTCACATAGTTAAA
TCAGCCAAACCAGAAATTGTTACTGGTCCACGCTTACACACATCGAATGA
CACTCTTACCAACCGAAACATTGATAAAAGTTCGCAAGAGAATAGAAGTT
CCGTTGTTCTTCAACCTTTAGATGAAGACGCTTCTAACAAATGCCAAAAT
GTTACCAAAAACATCTTATCAGATCCGCGGAGTCATAGAAAGGACAAGAA
TGTCGATAAACTCGCGAAACAACCTTCAGAAATCGATCCTTCGCAAGAAG
CTAAACCTAATAATGATATATGGTCTGTTTTAAAGGGCATAGACTTTGAT
TCGTTGACGAAAAAAGTTTTAACGGTTAACAAAGAAACAAAAGTTGAGGA
CAGTGTGACAATACCTTCCAACAAGGAAGTTAACTTGGACACTGAAACGG
GAAACTCGAACCTTCAGAAAACATATAAAACAGATTGCTCTAATGAAGCA
AATTTAAAGAATTCAAAAGGgattttccacaaaataccgCTTGAACTTCA
AGCAATGGATTTTACACGGGGATTGAGCCTGGATCCTCTTCATCCTGATC
CGAGGCTAAGACCAAGAGAAgtgtttaagaaatattctcAGACTTCGAAA
TTGAAACCAAAGAAAGATAGTACTACGGAGAAAAAAAATACTGACATGCC
TTTCTCAATTCAAGCACACCAATCTAACAAAAAGAAACACATGGAACATT
CTAACAAGCCACAGCtagaagaaaatttaaaagaacgacCGTGTGATACT
GAGAAACAACTGTCGAACGAGGATAAAGTATCACTTCCAAAGGAAAAACG
ACCATTAAAAAGTAAAGGACTTTCATTGGACAAAAAACGACCACTCTGCG
AGGAACGAACTTCTACCAAGGAGCAACGAGTACTTGATGACAAACGACCG
AACGAACAAGGAACTCTAGATAAATCGAAGTCATTCATTGATAAGACACC
TTtagaagaaaaacaacaaactttAGAAGATGGAaaacaaaaagtagaaa
atgaTGAACCACTTCATCCCAAGGGATTGTTCGAACAATCGAGAATAGCT
ATAGAACGTAGTATTAAACCATCCGTAACAACTCAAAAATTACCCGACGA
TAGAACATTGCAACCTGAGGAAACGAGAACATTGCAACCTAAGGAAACGA
GAACATTGCAACTTGAGAAACCTGAACGACGAGCCAACAAACAAAAACTG
CAACCAGTCAAACTAATCAAAGCATCCTTCGATAGTAAAGAACTTCTCGA
TATTCCTTTACCTTCGAAACTCGATTTGAGCCTATTTTCTGATGACTCTC
AAGAATCACGTGTTGAAAATGAAGTTATTCTATTGGACAAATCTCATGAT
GTGACCAATGAAAACCCAGCAAAAATGACA Run BLAST on NCBI transcript from alignment at sc0000044:556425..561160- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004421 ID=TCONS_00004421|Name=TCONS_00004421|organism=Clytia hemisphaerica|type=transcript|length=4736bp|location=Sequence derived from alignment at sc0000044:556425..561160- (Clytia hemisphaerica)
CAGAACTCAGAAAATAAAAAAGTTAACAAAATGATGCCTAATGCAAAGCG
TCAAAAAGTGGCAGTGAATAAAGATGATGAAATATCTCAACGAGGGACAA
AACAATCAAATATTCCATCCTTGATGGTATGTGCTAGAAGGCCTGAAATT
TCTATAGAAGCTTTTGATTTTCCATATGCTATAGGTTTGGTTATTTATGA
GAAGAGAATTGACCCAAATCCTATTTTAAAAATGTTGTAACTATAGCTTT
GGAATATTTGGCTCTATTTTATGTTTATTATTTATTATAGAGTGAATAAT
ACAAGCGGTTTGGGGGCTGTTGAATCAAAGTTATACCAAAAAAGTATTGG
ACAGACTAGACTGAATCTCACTCTAGATTTTTGTTGCTAAAAACTAAATA
TTTTTTATGCACAGGATTTAACCTTTGGAAATAAGGTACAAAATCTGGAA
ACAACTGAGACCAATCTTGGTGCACGAGTACAACCTCCGAAGAAACCTCC
AAGTGGTGTACAGCGAAAGAAGACTGGCAAACAGGCCAAAAGAAGGGAAG
CCTTCCAGAAAATTATTAAAGAAGATGTTTCAGCTCAAATTGATACTAAT
CAGAAATTGAGAGGAAGAGGGAAAAATGTTCTACAAAAAATGGAAGGTGA
TTATTTCGATTTTTGTCCCTGAAGAAGCTAAAATGCTAGAAAGAAATCCC
TAAAAGGGTCCTAAAATCCCCTTTGCCTCGATTTTTGACCCAAAATTTCC
AGATTTTTAAAACTCAGGGTCAGGAGGCGCCAACGCGTCACCTGGCAAAC
CCAGTACCCCCAGGATTTCTTTCTTTCTTGTAGGTGCCACAAATGGTCCA
TTGAGTGTCCTTCACGATTGCATGCAATATGGTATCAAAGCGAAAGTTTG
GGTCAGGCGTTACAAGGGTTTACGTGGTTGTTTGACTGGATATATTGCTG
CTTTTGACCATCATATGAACCTGGTAAGATTTTAAAACATAGAGCTCTTT
TTTTTAGTCCAGGATGTGTAACTCAACACCCCCTGCTACACGCTTTTTTT
TTTATAAGAATACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAA
ATTAAGAATATGGTAAGAATATCACCATCATGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAGCGTTTAATTCCAACCCC
ACTTATTAAGTTTTGAGATTTTTTCCAAGCCCACGCTTTTTCTAATACAC
TGTCTATTAGGTACCCGGGAGTACTTATTAACAGGCTATGTATGAATTGA
AAATTTCCTTTATGCTGTCGCATAAAGTTAAGAGAGTGTTGGTTCTGCGA
CTCGTGCCAAATCTTAGAAAATGACACTTGGTGTCTCATCTTAATACTAA
ACGCTTGAAGTTAAGGTGGGTTCAATGGTAAACTAGGGGAGGAGACGCAC
TCTTTCCTAATTTGGGAAGATAGCTAAGGAAAGGAGGGGTTTAAAGGTCG
CCCTCGGCTGCGGATGGAAACCTTTACTTACAGTTATTATAATTCTAATG
CTCGCTCAACAGTCAAATGAAAATATTTTTGCTGAAAAAGCAAATTACCG
AATATTTCGAGATATGAACCAATCTGGTTACTCATAAAAACTGTTCAACA
AAACCTTTTTTTGCCAGTTTGGTTTTTAACTTATTTTAAAGTGGCTGTAC
CGCAGAACTTCCTTAAGTGGATTAACTTCGGCGGGGATTTAATTCCGATT
GATCAATTCTGTAAAAATTGCTGGGGATTTTTTAAAATTTGGCGAATTGG
GAATTTGGTGACACTAAAATGGATGAAAGTTACTATAAAATATACTAAAA
AGGTTTGATTATTCACATAATGTTCTTTTTGTTAAATTTAGCGGGAATTT
AATTTGGCGAGTGGCCGATTTTTGAGAAATTTTGGCCAAATTTGATCCCC
GCCAAAATTAATCCATTTAAAGGGCTCTGACCATAGTCGAAAAATTGATT
TTAGTATGTAAACATAAAAGTTATGTTTTAGGTTCTTTAACACTTGGAAT
TGCCTTTATAAATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGAAT
TTAATTGCAAAAATGACGTTATGAACTTTAAAAAGACGTTAATAATATGT
TGCATCGTTGCATCACCTTCTTTTATAAAAAGTGTTGGGTAATTAACTTT
TTTGTTTCGAATTTTTTTTAAAACTGTCCGCAAAGAATTGAACTGTTTTA
CATTTTTTGGAAAAATTTTCTAAATTAATGCATCAAAAGTTATGGCTGTT
GAACTATGAAAAATTGGGATGGAAAACGGGTCAAAAAGCACTATTTTCAA
GATTTTGAAGCAAATAAGCTTTTAGAAAAATTTTCCGAAGAAATAGTTTT
AGTTCGATAAAAGATACACCATATACAGCAAAAAAAAAATTCAAAATATT
TTTTCTTTGCCGAAACTAAGCTCTTCAAAGTTGAAATACTCTTCTTCGCA
AAAGTCTTCATTTTCTTTTCTAGAACTTTATATTTTGTAAGTGGCAAATA
TTAAAAATTCACTATGGTCAGAGCCCTTTAAGGTATCCGAAATTTTACGA
TTTTGGCGCGTTTGATATTTGAGTAAACTTTTGTTTAGTCATCCGTGAGT
ACAGTATGTTTATGTACACATATAGATTTTATCAAAGAGTTTTATGTGTT
TTAGGCTTTGATTGACGTGGAAGAAGTCTATACATTAGAAACATGGATGG
TTGGCGAACCGTTGAAGAAATACCAAAAAAAAGTCTTAAAAAAACGTGAA
GAAAAGTGTCAACTAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAACC
GTCTACAGGCGCTACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGATT
ATCTGAAGAAACTAACGCAGTCTTTGCGACAAAATACATCATCTCCTACA
TTGTTTGCCAACCTTCACCGAAACTCAGCAATGACAACCAATAAGCCATT
AGAACAAGAACGAAAAATCGTAAGTGGGCCAACAGTCGATAAAAACCCAG
ACTCCACCATAGATAAGGATTCTAATATTGCTGTTAAAACTTCTCACATA
GTTAAATCAGCCAAACCAGAAATTGTTACTGGTCCACGCTTACACACATC
GAATGACACTCTTACCAACCGAAACATTGATAAAAGTTCGCAAGAGAATA
GAAGTTCCGTTGTTCTTCAACCTTTAGATGAAGACGCTTCTAACAAATGC
CAAAATGTTACCAAAAACATCTTATCAGATCCGCGGAGTCATAGAAAGGA
CAAGAATGTCGATAAACTCGCGAAACAACCTTCAGAAATCGATCCTTCGC
AAGAAGCTAAACCTAATAATGATATATGGTCTGTTTTAAAGGGCATAGAC
TTTGATTCGTTGACGAAAAAAGTTTTAACGGTTAACAAAGAAACAAAAGT
TGAGGACAGTGTGACAATACCTTCCAACAAGGAAGTTAACTTGGACACTG
AAACGGGAAACTCGAACCTTCAGAAAACATATAAAACAGATTGCTCTAAT
GAAGCAAATTTAAAGAATTCAAAAGGGATTTTCCACAAAATACCGCTTGA
ACTTCAAGCAATGGATTTTACACGGGGATTGAGCCTGGATCCTCTTCATC
CTGATCCGAGGCTAAGACCAAGAGAAGTGTTTAAGAAATATTCTCAGACT
TCGAAATTGAAACCAAAGAAAGATAGTACTACGGAGAAAAAAAATACTGA
CATGCCTTTCTCAATTCAAGCACACCAATCTAACAAAAAGAAACACATGG
AACATTCTAACAAGCCACAGCTAGAAGAAAATTTAAAAGAACGACCGTGT
GATACTGAGAAACAACTGTCGAACGAGGATAAAGTATCACTTCCAAAGGA
AAAACGACCATTAAAAAGTAAAGGACTTTCATTGGACAAAAAACGACCAC
TCTGCGAGGAACGAACTTCTACCAAGGAGCAACGAGTACTTGATGACAAA
CGACCGAACGAACAAGGAACTCTAGATAAATCGAAGTCATTCATTGATAA
GACACCTTTAGAAGAAAAACAACAAACTTTAGAAGATGGAAAACAAAAAG
TAGAAAATGATGAACCACTTCATCCCAAGGGATTGTTCGAACAATCGAGA
ATAGCTATAGAACGTAGTATTAAACCATCCGTAACAACTCAAAAATTACC
CGACGATAGAACATTGCAACCTGAGGAAACGAGAACATTGCAACCTAAGG
AAACGAGAACATTGCAACTTGAGAAACCTGAACGACGAGCCAACAAACAA
AAACTGCAACCAGTCAAACTAATCAAAGCATCCTTCGATAGTAAAGAACT
TCTCGATATTCCTTTACCTTCGAAACTCGATTTGAGCCTATTTTCTGATG
ACTCTCAAGAATCACGTGTTGAAAATGAAGTTATTCTATTGGACAAATCT
CATGATGTGACCAATGAAAACCCAGCAAAAATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004421-exon-sc0000044-1575043694:561035..561160 | TCONS_00004421-exon-sc0000044-1575043694:561035..561160 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1575043694:560515..560746 | TCONS_00004421-exon-sc0000044-1575043694:560515..560746 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1575043694:560188..560327 | TCONS_00004421-exon-sc0000044-1575043694:560188..560327 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1575043694:556425..558206 | TCONS_00004421-exon-sc0000044-1575043694:556425..558206 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1510915933:561035..561160 | TCONS_00004421-exon-sc0000044-1510915933:561035..561160 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1510915933:560515..560746 | TCONS_00004421-exon-sc0000044-1510915933:560515..560746 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1510915933:560188..560327 | TCONS_00004421-exon-sc0000044-1510915933:560188..560327 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1510915933:556425..558206 | TCONS_00004421-exon-sc0000044-1510915933:556425..558206 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1491911889:561035..561160 | TCONS_00004421-exon-sc0000044-1491911889:561035..561160 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1491911889:560515..560746 | TCONS_00004421-exon-sc0000044-1491911889:560515..560746 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1491911889:560188..560327 | TCONS_00004421-exon-sc0000044-1491911889:560188..560327 | Clytia hemisphaerica | exon |
| TCONS_00004421-exon-sc0000044-1491911889:556425..558206 | TCONS_00004421-exon-sc0000044-1491911889:556425..558206 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:556425..561160 - |
Blast
The following BLAST results are available for this feature:
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