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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004422 ID=TCONS_00004422|Name=TCONS_00004422|organism=Clytia hemisphaerica|type=transcript|length=2751bp
ctccaaagtcatagcttggaatacaaAAACATCGCGTGAACAGAAATTTA
GCGTCTTtagcgctccaaagtcatagcttggaatacaacaacaaaaagcA
ACGAAGCAACTTGGGACCAGTTGGTTTCAGAAAGTAGAAAGTATATAATC
CCATATACTGTTCTGCAACTTTGATAaaaagaaacaaaaacgcAAAAATC
CACCATCCCAAAAACTACAACAACAAACCAAACTACAAAAATGATTCTCA
GTAACAGTTCTCACCTCACTGGATATGTTATCATGGCATTAGTATATATC
ACAACATTACACGGACTATCAGTAAATGATGTTAGGAATCAACTAGCTAG
GGAACTTAAACAATCAATCGATTATGATGAATATCAGACGTTCAGAAAGA
GACAGCTAGGAAATGGACTTGGTGAGAACCCTCTTGATAGACTAGCCACT
GGTGTACCCAAGGATTTCGAATGTGAGCATATGACGGCACCTGCAAACAG
TAAAATCAAATGTGGAGGTCGATTATGTCTTGTTAAATGTGATGAAGGAT
ATGTATCACACCCAAAGAATGCATTTGTGTACAGATGTAAAGTTGAAACG
AAAGAATGGATTACTTTACCAAAAGGTTTACCTCTTCCAATCCCAGGATG
CATCAAAATATCTGACTTAGTACCGATCTATTAACGATTACCCACAGAAG
GGAAAACTTGGAAAATGGTACAAAGACGAAAGAAAAATCCATAACTTCCA
AAAGATCCAAACGACGTGATGAAAGAAGAAAGACCCTTGGTCCCCCAAAA
ATGACGCccttttaagatattaaaattttattatttattatatatACATT
ACAATATACATTATAATGCAAATAACgactatatattttattttatttaa
tggATAATTATTTCATACTAAAATTGTgtaaaaattactttttattaAGG
TATAATTTACACTGTCAtacaatttttagatttttttcttctaaaatctt
tttgacttTGGAACCTTTGCAAGTGTTTTGTACAGTGATGATATATTATC
TCTGCTAGCGGAGAAAAATTAATGATGATGGTTAAAAAGAAATTATGCaa
tgcaaaaataaaatctactaTTGACTGTTAATgttacaaccctgtctcac
agccccatggaatatttctatcgaaatctaAATGTGGTTAGAAATTCTAC
TGTTCCTAGCTAACGAAATTCTGTAGGATGGTTTCGGTGTACAACATCTT
CTTTTACATTGGATTTCGAATAGGGATGAAATCGAAGTCATTTGTCAGTG
GGACTGAACTTGTTGGgagatatctttccaacggggacgaaattttggcc
aaattttcaagTGGGACGGGGGTCGTAGACAGAGCCActtttggatttta
ctgatggatGCTGGTGTCAATATTTGACGACTAccttcactttcgttttc
taattgtTTACTTTTGTCGGTTGCAGGACTCTTAGTCTGTAGTCTTGGCC
TAGTCTTTTCTCGTGTTTTTCTTGTCTGCTTTCATAATGGGGCGCTAGTT
ACAAAGTTACAAATCAAACTTTAAGACGTTAATCTGAAAGAAGATTCTAT
CCAGTTCATTGTACATTTTACTGTCTCCATACTTCTTGTCCATCATGTTT
CCCCACAGCCATTTCCTCGAGCAAATCAACAGCTGGTTGGTTCGAGTTTG
AGGGGTGTATTGCTGCACTCTCCAAGGGGTCCGAACTTCGCCTCTACATG
CTTTTTCTTATAACAACGTACTCCATAAGGATATTCGTGAAAAAAAATCG
GAAAGTAGTTTTGTACTTTTATCCATGATGTATAAGATAAACAGGTACCA
AAATGCCGAGAGCCGAGGAGACCACTGTAACCAAGAACAACCAGAAAAAC
AAACGATCCAGTACTCGAGCGAGTAGCCTCCAGTCTTCTTGCAGTTCACT
TTTCTGATGACTGCTTAACATTCcttttgttataatttgaatTTCCTTTA
AAATCACATCAAGCGTCCCGCTAAAATTATTTGTCTGAAGGGTTGAATTT
GGATTGCTTTTCTGAAGGTCATTGTATTCATCTGACATGTAGAAACCATT
ATCATAAGCGGAGGAGTGGTTTTTATTCGCATCCTCGCCTAACCTGGTTT
CTGTCTGCATTGTCTCAAGTTCATCATAGTAACCATGGATACCGAAAAAT
TTTGCACATGTACCAAGAAAGAAACTGCGTACCCACTTCGGCATAGGTGC
TGCACCTCTTTCACTAGACCGGTAATGAATAACCAAGACAATACACGTAG
TTATCAGGCTAAATGCACTTTCAGCCATAATCGCCATATAGAAGACGGCT
AGCATTGGAACACTATTCGAGTTGCGAGGTAATGCGTCGGATATCAACTG
GAGAAACACGGCAACAGCAAGCAAAATAGTGATGGTCAAAGATATGCGTT
CTCCACTTTCAGGGGGtagaaaaaaaccaaaaaatacaGTCATAACTAAA
ACCAAGCAAGGTGCTATAACGTTGAACACGAAATATAATGGTTTCCGTAA
TAACACTAAATTGAATGTTATATCAACATAAGGCTCTGGGCAACACTGGT
ATTTGACAACATGTCGGAGTTTCTCAGCTTTGATTAAATCCCATTCACTG
GACGCAGAATACTGGTCAGTAATCAATGGACGATTATCCTTGAGTAAATT
GATACCAGCAATATCGAAAGTCCAAGAACCAAATTTCAAATGACATTCTT
G Run BLAST on NCBI transcript from alignment at sc0000044:613370..623564- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004422 ID=TCONS_00004422|Name=TCONS_00004422|organism=Clytia hemisphaerica|type=transcript|length=10195bp|location=Sequence derived from alignment at sc0000044:613370..623564- (Clytia hemisphaerica)
CTCCAAAGTCATAGCTTGGAATACAAAAACATCGCGTGAACAGAAATTTA
GCGTCTTTAGCGCTCCAAAGTCATAGCTTGGAATACAACAACAAAAAGCA
ACGAAGCAACTTGGGACCAGTTGGTTTCAGAAAGTAGAAAGTATATAATC
CCATATACTGTTCTGCAACTTTGATAGTAAGTATTAAAGAATTTCTTTTT
GCTTTGTATCCTTGTTTGTTGTATAATCAGGCATCAGTTACTTTACTGTT
ACTTTTGGGTACTTATTATCAGAAATTGGAAAAAACTTTGCATACTACCA
TTAACGAACTTTCTGTTTATCTCCAGGCAATGTCAATTGAATTCAATTGA
TCCAAATTTTTGTAATTGAACTATCAAATTTTATCAAACAGAATCAAACT
ATAGGTGTTTGGTTACTGAACCTGATCGAAGACAACCCTGTCTAACGAAA
GAAATATTTCTATCCCCAGACAAACAAATTGCGCTGCCAGATAAGTGAAC
CACGCGGCTGGATAAGTGAACGTGTTGTCACGAGTTAACGCGCGGTCGAC
TAAGTTCGCATGAAAGCAGGCAGAATAGGGATGGCCATCCATATGGTGAA
ATTGACGCCCATGTGTGATCGCCCAATTGTTTAAGTACGTCTTGCAGACC
ACGCGTTCAGTCCGGGGTAAGTCTCATAAAGTAATATTAAATCCTCGGAC
ATGCAACAAGAAAATCCCTGGAGTCCTGGGAATCGGCAGGGTCGTTCGAA
CATTCAACTTTACCAGAATCTTTTAGTTTCGTGACTGTTCGATTTGGTTG
CGCGGTAATCTAACACCTATCGTTCAGTGTAGCTCTAAAGCTCTAAAAAC
AGCATCTAATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAA
ACTATAAAGTGCACTTACAAACATCAATTTGTCAGATCTAACAAAATTTA
TAACGGCACTGCCAACATTGACAATAAAACAAACAATATTCTGTCAAGAG
CCTTGTAAACATTCCAACAACTTCCATCGAAATGATCTATCACAGCTCAG
TCTACCATTTTAGCGCGGTCCGAGGATTGAGCCGAGAACTCTTGCAGAGC
GCCCGAGCTCCCGCGCGACGCGCACCGCGGGGATGAAAAACTTCAATCTG
TCAATCATTTTCTCAAGCGAAAAGTACGCGAAGCGATTCTAGCTTTACGA
TAGTGCCGCAGATCATCAATGGATAGTATTCAATTAGCATTATCCCTTTA
TTTTCATTCCTAGAACTTTTGCAAAAAAAAGGAAAAATAGAAAAGTTGCA
TTTTTTACTGCTCTATTCACATACTGAATTTGAAAGATCTTCTATGTGGC
GTTTTTTTGCAAACTTAAAAAAACTGATTTTTGTCCCGCCTTTGCGGGAT
TTTGGCCCAAGTGCTTCAGTGCAGCATAGGGTACAAAGTCCAAATATGCG
TTTCCCGTAATTTTTGTATGAAGAGTTAGGTCTACACTGTCGTTTGATAA
TGTTAGATTAGATTGGTACCTGTGGAAAAGGGTAATTTGCATCATTTGAG
GGAAACTTTACATTGCCTCCAAACTGCAGACCTTTCTTGGTTTGCGCTTT
GTCTAAGCTAAAATGTAAATGAAATGTTTTACAATTTTAGTACCAGAAAG
CTCTACTATTTGGAGGCAATACCAGTTTCGCTCCAGTGATTACCCTTTTT
CACGGTAATCAAACAGTCTGATTGACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCCTTCGTTCATTCACCATGACAAATACCATATTAACCATTAAAGTAG
TTTTACACGTTGGATGTACCGTCAACTGCTTTAAAGCCAGATTGACATTA
TATATTTTTACGAGATCTGAATCGCTGCTTCAAATACGCTGAGTTTGCAC
AAAGATAGCAGTTGTTCAACCAATCATCAAACTTCATTTTAATATAATAT
TTTATTGACAAGAGAGTTTTGACTTCAAAATGTTGAACAAGAATTGGAAT
GAATTGTCTGCGTTTTTAATGGAGCTGTGCAATGTTTGTGCAATGGGACA
CCAAAACAGCAACCATTTTCACCGAACATCCACAGAATTNNNNTATCTCA
AGTAATCCCATTTTAGAGCAGTTGACGGTACACAAACTTGACATTAACAC
TCCTTTTGTTGGAGAAATTCCTGAAGGATATTTCATGTTATGTACCTGTT
GTTTGGTTGAATCATTTTGGTTTTGGAATGCTTCTGTACCCACTGTATTC
TTTACAAAACAATATTACATTACGATATAGACAACAACTTAGCTGAAAAT
TATATCATTGTCAAAATATAGTCTTGGAAATTATAAATTCATGTTTTGAT
TTATGTTTGTTATTTTTATTTTTGTTATTGTTGTTTCAAAGAAAATGCTT
TTGAGAAGAAGGTGCTCTAAATATTTCCTGAAGATTATTCCAAGACCCTG
CCTATAAAACTACGATGGCCCAGGAGGCTCAAAACACGCACTTCTAGTTT
TCACGCACTTCCAGTTCTTATAAAATTTGTGAACTAGAATTGTCTAGGGT
CAATGGCCCAGAAGGCTCAAGTGACACTGCGCAATTCTGACTTTTTGTCA
CAGCGGGAAATTTCCAAGTGAACGGCCCGCGCAATGAAATTTTTTTTGGT
CTTTAAAATTAATGTCGAGTTGCGCAAAACGAGTTAATATTTTCGAGTTG
TTCATATCAAGAGTTACAGGTTTAAATTTCCGAGATAAGTGCTAGTCAGC
AAAATTTCCCTTCAGCGGCAAAAATCGGGGAATTTCTCGGGCTTAAATCG
GGGAAGAAAAAAGTGACCAAATATTAACTTTGTGAAAACTAGAACGTAGA
AGTGCGTGTTTTCGAGCCTTCTGCTGGGAACGCCAAAATAACTCGAGTCG
AGAATCTACAGGAAGGAAAATAACTCAAAAATTTAAAAGAACGAAAATAA
ACCGAGTTAAAAAACGAGAAATAGCTCGAAAATTCAAAGGGAGGAAAAAT
ACTCGAGTTAAAATACCAGAAATAACTCGAAATTTCAAAGTCAAGGAAAT
AAAAACGAGTTACGAAATTGAGAATGACTTCATGAGGTACATACAAAATG
ACGTCAATATTTATTTCCGAAAATAACGCCATAACTCGTTTTTTTCGTAA
CTCGGTTCTTTAACTTGGGATTTCCGAGCCTCTTCGCTATATTATCATCA
ACTCATTTATTAAAACTCGGTATCTATTTTGCTGACCATAACGGCTATCT
TTCGAGAGGGACTTTTGCGTCTCTAAAATATTTTTAGAAGAACGCAGTGT
CGTCACTGTCGTCACAAAAAAAGTCGGAAGTGCGCAGTGTCTCGTGAGCC
TTCTGGGCCATGACCCTAGACAGTTCTAGTTCACAAATTTTATAAGAACT
AGAAGTGCGTGGTGAGCCTTAGGGGCCATCGTATAAAACATGAAAAGCTT
TGTAATTCAAGCCTTATAAGGTATCTATTAAAGGGGGCATGTTTAGTGCA
AGCTATGGCTGAGAATAATTGAATACTTTGCAATATCACTGTATTTCTGA
CAAAAATAAACACGGCATTTCGCCTTTTCTGAATTTCAATCAATCACTGT
CAAATGCCTGTCATCGGGAGCATCATAGCGAAAGCTACTTGCTAGTAGTA
CTTTATACAGGATTCGAAAATAATATAAACAAAATCTCAAGAATAGATTT
TCATTATTTTAATACATATATAAAACAAGGAAGAGAATCCGTTTAGTACA
GCTCGTTTCTGATAAGGGAGAAGAGAAAAAAACTATTTCAAGGCTAGATA
ATTTATTTCCTTCGTCAGCGACAAGCAAGAAAATAAAGAAAATTTCCAGA
TCGAATCTACTTACAAAATTTTCAATGGATTTGGCAATAACATGAATTAG
AGAAGGAAAAAACAATGATGAAAAAATCTAGATAAAATATTTTAAATGAC
GTATAATCCAGATAAAATTTCATCCTAAATTTCGATATTGTCAAAATATC
GGATTATCCATACTCAATAAAGGCTACAAACCTTTTACCGTTTCAGCCGG
ATAGAAATAATTTTTAGAGAAATAAGTATGACGTCATCGCCCTGTCCCCC
AACAAAAGAGAATCCCTTTTCCATTGTTAAGGAAATTACTATATTATGAG
AGTGAAAAGGGTCCTGGTCCATAAGACAGTTGACAGACTACTTGTTCATT
GTCTAGTGAGGTGTTCACAGTTTTGAATATTTCTGTGGACAATTTCTGGA
AGATTAATGCAAGCCCATCTGGAAGGTACAGTTGACGCTCTCTAATTCGA
TTTTCAAGAGGAATTAGATTTTCATCGAATAAGGGAACGTATCGAATAGT
AGAGCGTCGTTTATGAGAGTTTCTCGTTTCTCGTTGACGGTGACTTTCAA
TATTATCGAATAATTGGAACTTAATAATTAGAATTACGTGATTTATAAAT
TCGTTTATTGACCTTATAAGAAGCTGTTTCTTGTTCATTTTGAAAACCAA
AAATTTTGTCATGTGTCACTAAGAAAAAAGCCGTCCTAGGATGTTTCCAT
TTATAAGAGACCAATTTTTTATCTTTTTGTTTTTATAATTCTATTTGGGA
GATGAGAAGGTAAAAAATGAATCAGTGACCCAAATCCGTGGAAAATCCTT
ACAGTTTTTATTTTAATTATCTTTTTGAGTTTCAAACTCGAACCCAGTCC
TATAATTCGCTTTTTTATTTTTTTGATTGCGAATCGGAGAAAATAACGCA
AGTGGCTCTGGGTACGAGATTGTTCGAATTGTGAAATCATACAATTTTGT
TTTGTTTTCTCAAAACTTTTAATTATGTCTTTCTAATCCTTCGCAATAGT
ATTTTGTTGCACCGGTAATCCTTACCGAAATAAAACCAATTTCGAATGAT
GGTGGAATTAGTTTTAGTTGAACCACAATCAAGCCATTTTGATAGCCTGA
TTTTGAGATAAAGACATCGTAATAAAAGTATTATCGAAAACTTTTGGATC
CATGAAATAGTAAACTTTTAGTTAGGGACAATTGTTCCATTTTAAGATTA
ACTTAAAAGTCGATTTTAAAAATATTAGTAATTTCAGAATAGAAAATATC
AACCCCGGAAAAATGCGATTTATAGTCTTAATAAAAATCTTAAGTATTAC
AGGAGATATTTTGCGCCAAAGATTCCGAAATGGTACTTGACGTGTCTCTA
CTTGGTTGAGATAGGTCAAGGGTTACTGGATCCGTGCTGACTGCGGTTTT
TTAGAGGTCTGCGATTCATAATAATTCAAGGGTAAAAGGAGACTTTGCGT
CCTCCCATACCTTCAGCTAATAGCAAGGTGTTCATTCTAGGGTGTGTTTT
TTACAAAAAATCTTCTTTTTTAAGTCAGAAAAGAAAAAGGAAGTAACTTC
TTGGTTATTTTAAAAATATATTTCTTCTTATTTTCTCAGAATTCTTAAAG
TATAAGATCCTCCAATTAATTTTAACGGTCTTACATTAGCGTGGGAAGAG
AAAGTTCCGCTCCTAAAATAGCTGGTTGTTCTTCTTTCAACTTTTTTTTT
TAAGTTTAGAAATTTCATTGAGTTTTTTTGCTTTCAATAAAACTTTTAAT
ATAATGTACACACTTATTAATCTTTAGCGGTCTGGTCATCTTGTAGGGGA
CTGGAATCGAGTTTACATGGGAGTTCTCCTCAAGCTTGTGAAGGTTGCAA
AAGTTTGCTCTAAAAATTCTAAGCCTACCAATGTTTTTAAAATGCTCTTA
TTTTCACTATTTTAATTTAGTGCGATTTTCCTAAGAAATTGGGTGTTTTA
GGATATATGAAGTCTTATAATGTTCTAACTGCTTATGTTCTTATAAATAT
TCAATATTCTATAAATATAGTTTTTATTCTCGTAAAAAACGTGTAAACTC
TTTACCAGTTTTTTCACAAACCGATCACGAGATTAATAGTAATAACAAGG
GCGGTAAAGTCGCAAAATACAATCTAGCATGGTTAAAATTGTGACCGATT
AAACTTTTAGAGTAAGCAATATTCAATTTGTTATTTTAGAAAAGAAACAA
AAACGCAAAAATCCACCATCCCAAAAACTACAACAACAAACCAAACTACA
AAAATGATTCTCAGTAACAGTTCTCACCTCACTGGATATGTTATCATGGC
ATTAGTATATATCACAACATTACACGGACTATCAGTAAATGATGTTAGGA
ATCAACTAGCTAGGGAACTTAAACAATCAATCGATTATGATGAATATCAG
ACGTTCAGAAAGAGACAGCTAGGAAGTAAGTACCCTTGCTATTTTCCATT
TAAATGGTTATGATTCTGAAAATATCAGTTAAAGGTGAAAATTCACTAAA
TTCTGATAAATGTATCCGACAGGATCGACTTTTTGTCGGGTGCATGTCAC
TAGTCCGACACTTTCTAGTCCGACAGTAAAATATTCCGAATCTATAAAAT
AAATTTAGAATTTGGGAGTCTTTTTTTCCGATGTCACTTTTGTCCGAAAA
CGAAACATTTTAGAGTGTCGAATGTTGAATAGGGTTTTTCACTGAGATAA
TATTAATGAAAGTTCATTTAAAGCGGAACTTCGGATTTTTATAAGCACGT
GGTTGCTTATAAAAGATGTGCCTCCTTTTCGGCGATTCATATTTCGTTTC
ATGTTTCATACATTCATGCATGTTTGTTTTTTGACTCGTTGTCGGACAAA
ATTGTTGTCGGAATACTGACGCATTCGTCAAATCCAACATCGGACATTTT
TACTGTCGGACTAGAAAGTGTCGGACTACTGACGACCTCCCTTTTTGTCA
TTTCAAGAACTTTTTAAGCTGAATTTCGAAAAACATCAAATACTTTCTCT
TCTAATATTCATCTGGCAGGGCCCAATATTTGCTATGAAAGTGATTTTTG
ACTGACAAGTTCCACTTTTTGAACCTTTGAATCATTTTATAATTTTGGTA
TTTTGTGTTTTGCTAAATTTAGTTCGAAACAACAACTTTTTAGGCTGAAT
TTAGGAAAAAATATCAAATTTTACATCTGAAAGGGTTCAATATTTGCCAG
AAACTGTTTTATGACAGGATCGAATTTTAAAAACTTTAAATTATTCGACT
TTTCGGTATTTTGTGTTTTGAAAGAAAAACCTTGAACTAAAATGCACACT
TTAGGACTCAACATATTTTCATTATTTATCATTCATAGATGGACTTGGTG
AGAACCCTCTTGATAGACTAGCCACTGGTGTACCCAAGGATTTCGAATGT
GAGCATATGACGGCACCTGCAAACAGTAAAATCAAATGTGGAGGTCGATT
ATGTCTTGTTAAATGTGATGAAGGATATGTATCACACCCAAAGAATGCAT
TTGTGTACAGATGTAAAGTTGAAACGAAAGAATGGATTACTTTACCAAAA
GGTTTACCTCTTCCAATCCCAGGATGCATCAAAATATCTGACTTAGTACC
GGTAAGTTTTCTATTAAGACCAATCTTGTACCCAGCCCACCTACGCCATT
TTTTTATCTTAGAGACTGGGTTTGAATTAGTCTTATACCTAGAGCCACTT
ACGCCACTTCTTTTGATGTTACTGATGTTCATGTTACGTTAGCTGAATCA
TAAAAATCAAAAAACTTTAAGGGACTGGGTTTCCTTTTGTATCCAATCGG
AATAGCTTGAACCCCCATAACTTAAACTACACTAAATACAGTTGACTCTT
TTTAATTCCATCTTAAGTGGCAAAGAAATTTCTCCGAATGTGTAAGAAAT
ATTTGAGTTACAGTAATTATTCTATACCACTCAACAACTGTAAGGAAACC
AATATCTTAGTACTGGAAATTCTCTAAAACTCGAACTTTTGTCTGATTTC
TCCCTTGGCGTTCGATTTATGGAGAGTCTGTCTAGCTTTAAAACTGATGG
ATTTTATACTCTATTCTAGATCTATTAACGATTACCCACAGAAGGGAAAA
CTTGGAAAATGGTACAAAGACGAAAGAAAAATCCATAACTTCCAAAAGAT
CCAAACGACGTGATGAAAGAAGAAAGACCCTTGGTCCCCCAAAAATGACG
CCCTTTTAAGATATTAAAATTTTATTATTTATTATATATACATTACAATA
TACATTATAATGCAAATAACGACTATATATTTTATTTTATTTAATGGATA
ATTATTTCATACTAAAATTGTGTAAAAATTACTTTTTATTAAGGTATAAT
TTACACTGTCATACAATTTTTAGATTTTTTTCTTCTAAAATCTTTTTGAC
TTTGGAACCTTTGCAAGTGTTTTGTACAGTGATGATATATTATCTCTGCT
AGCGGAGAAAAATTAATGATGATGGTTAAAAAGAAATTATGCAATGCAAA
AATAAAATCTACTATTGACTGTTAATGTTACAACCCTGTCTCACAGCCCC
ATGGAATATTTCTATCGAAATCTAAATGTGGTTAGAAATTCTACTGTTCC
TAGCTAACGAAATTCTGTAGGATGGTTTCGGTGTACAACATCTTCTTTTA
CATTGGATTTCGAATAGGGATGAAATCGAAGTCATTTGTCAGTGGGACTG
AACTTGTTGGGAGATATCTTTCCAACGGGGACGAAATTTTGGCCAAATTT
TCAAGTGGGACGGGGGTCGTAGACAGAGCCACTTTTGGATTTTACTGATG
GATGCTGGTGTCAATATTTGACGACTACCTTCACTTTCGTTTTCTAATTG
TTTACTTTTGTCGGTTGCAGGACTCTTAGTCTGTAGTCTTGGCCTAGTCT
TTTCTCGTGTTTTTCTTGTCTGCTTTCATAATGGGGCGCTAGTTACAAAG
TTACAAATCAAACTTTAAGACGTTAATCTGAAAGAAGATTCTATCCAGTT
CATTGTACATTTTACTGTCTCCATACTTCTTGTCCATCATGTTTCCCCAC
AGCCATTTCCTCGAGCAAATCAACAGCTGGTTGGTTCGAGTTTGAGGGGT
GTATTGCTGCACTCTCCAAGGGGTCCGAACTTCGCCTCTACATGCTTTTT
CTTATAACAACGTACTCCATAAGGATATTCGTGAAAAAAAATCGGAAAGT
AGTTTTGTACTTTTATCCATGATGTATAAGATAAACAGGTACCAAAATGC
CGAGAGCCGAGGAGACCACTGTAACCAAGAACAACCAGAAAAACAAACGA
TCCAGTACTCGAGCGAGTAGCCTCCAGTCTTCTTGCAGTTCACTTTTCTG
ATGACTGCTTAACATTCCTTTTGTTATAATTTGAATTTCCTTTAAAATCA
CATCAAGCGTCCCGCTAAAATTATTTGTCTGAAGGGTTGAATTTGGATTG
CTTTTCTGAAGGTCATTGTATTCATCTGACATGTAGAAACCATTATCATA
AGCGGAGGAGTGGTTTTTATTCGCATCCTCGCCTAACCTGGTTTCTGTCT
GCATTGTCTCAAGTTCATCATAGTAACCATGGATACCGAAAAATTTTGCA
CATGTACCAAGAAAGAAACTGCGTACCCACTTCGGCATAGGTGCTGCACC
TCTTTCACTAGACCGGTAATGAATAACCAAGACAATACACGTAGTTATCA
GGCTAAATGCACTTTCAGCCATAATCGCCATATAGAAGACGGCTAGCATT
GGAACACTATTCGAGTTGCGAGGTAATGCGTCGGATATCAACTGGAGAAA
CACGGCAACAGCAAGCAAAATAGTGATGGTCAAAGATATGCGTTCTCCAC
TTTCAGGGGGTAGAAAAAAACCAAAAAATACAGTCATAACTAAAACCAAG
CAAGGTGCTATAACGTTGAACACGAAATATAATGGTTTCCGTAATAACAC
TAAATTGAATGTTATATCAACATAAGGCTCTGGGCAACACTGGTATTTGA
CAACATGTCGGAGTTTCTCAGCTTTGATTAAATCCCATTCACTGGACGCA
GAATACTGGTCAGTAATCAATGGACGATTATCCTTGAGTAAATTGATACC
AGCAATATCGAAAGTCCAAGAACCAAATTTCAAATGACATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004422-exon-sc0000044-1575043694:623389..623564 | TCONS_00004422-exon-sc0000044-1575043694:623389..623564 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1575043694:617090..617325 | TCONS_00004422-exon-sc0000044-1575043694:617090..617325 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1575043694:615914..616176 | TCONS_00004422-exon-sc0000044-1575043694:615914..616176 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1575043694:613370..615445 | TCONS_00004422-exon-sc0000044-1575043694:613370..615445 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1510915933:623389..623564 | TCONS_00004422-exon-sc0000044-1510915933:623389..623564 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1510915933:617090..617325 | TCONS_00004422-exon-sc0000044-1510915933:617090..617325 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1510915933:615914..616176 | TCONS_00004422-exon-sc0000044-1510915933:615914..616176 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1510915933:613370..615445 | TCONS_00004422-exon-sc0000044-1510915933:613370..615445 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1491911889:623389..623564 | TCONS_00004422-exon-sc0000044-1491911889:623389..623564 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1491911889:617090..617325 | TCONS_00004422-exon-sc0000044-1491911889:617090..617325 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1491911889:615914..616176 | TCONS_00004422-exon-sc0000044-1491911889:615914..616176 | Clytia hemisphaerica | exon |
| TCONS_00004422-exon-sc0000044-1491911889:613370..615445 | TCONS_00004422-exon-sc0000044-1491911889:613370..615445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:613370..623564 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006202 | Neur_chan_lig-bd |
| IPR006029 | Neurotrans-gated_channel_TM |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005230 | extracellular ligand-gated ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005230 |
extracellular ligand-gated ion channel activity |
Blast
BLAST of TCONS_00004422 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.644e-46 Identity = 94/326 (28.83%), Postives = 173/326 (53.07%), Query Frame = -1
Query: 1822 QECHLKFGSWTFDIAGINLLKDNRPLITDQYSASSEWDLIKAEKLRHVVKYQCCPEPYVDITFNLVLLRKPLYFVFNVIAPCLVLVMTVFFGFFLPPESGERISLTITILLAVAVFLQLISDALPRNSNSVPMLAVFYMAIMAESAFSLITTCIVLVIHYRSSERGAAPMPKWVRSFFLGTCAKFFGIHGYYDELETMQTET---RLGEDANKNHSSAYDNGFYMSDEYNDLQKSNPNST-------------LQTNNFSGTLDVILKEIQIITKGMLSSHQKSELQEDWRLLARVLDRLFFWLFLVTVVSSALGILVPVYLIHHG 2751
Q C LKFGSWT+D A I+LL + + + +SEW++I A +H +KY CC E Y DIT++ + R P+++ N+I PCL + F+LP + GE+++L I++LL++ VFL +I++ +P S VP++ + + M S++ T VL IHYR+ MP+WV++ FL + + D+ ++ L K +++ ++ + ++ KSN +T ++ + S ++ ++ +Q I + M S ++ E+++DW+ +A V+DR+F W+F++ V G+ + L + G
Sbjct: 170 QNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHT--MPRWVKTVFLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFH-CHKSNELATSKRRLSHQPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDRVFLWVFIIVCVFGTAGLFLQPLLGNTG 492
The following BLAST results are available for this feature:
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