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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004520 ID=TCONS_00004520|Name=TCONS_00004520|organism=Clytia hemisphaerica|type=transcript|length=1559bp
cggaatagctattccggccggaacagctattccggttccggcattccgGC
ATTCCGCCGTTCTGCGTTTTGTCTCTACCCccgaaataaaaaatcgagGA
CATCGGAAACTACTTGTTTTTGcaggaaatttggaaaataaaacTACGTT
TAACGAATAGGATATATCATTGGTTTAGATGTGACGTATGGTTTAGCTTC
AAACTGCAGTTCTTGTAATTTCATATTGAAAGCTTCAAACTCATGGATGA
ACTTCTCGAGGTGATAGAAAACGAAAAGTCGTTATCTGACGAAGATGAAA
TCAATGCAGATGTGCATCAAGAGGGGGAGGAGGCTGTTTCTTCTATCATG
TTGTTCTCTGAAAACCCTAAAGTTGGCCAGCAGTCTTCTaagaagaaaaa
tatatctTTAAACACACCACAAacacaaaaaagaattttagttGGTAAAT
CGTCTCCTTTATTGGAAGGACCTCTTGCTGGTTCAGTATGTCGAAAAATG
TATTACACAAGAGATAAAGATTTATTGCTTTGTAAGGAAATTCTTCTAAC
TAATTTGCACGATACAAAGAAAGGAAGTCCTCTACGCAAAGAAGCATGGA
ATAAAGTGACACGCAAACTTCAAAGTACGTACGACGAACCGTTCCACCAT
CGGTCTGTTCGAGACAGGTTTGCACTACTCATTGATAAGTTCCGAAATAA
AATCGATATATCAGGATATAATGGGaaattttatgaagaagaaAGCGAGC
TGAAGGAGGCTTTGACGACGCTGGAACATCTTGATAAAATAGATGATGAA
ACACGACCACGGAAACGCACCATTCAGATTATAGAATCAAACAAAGTTAA
GAAGAGAAGAAGTAAGACATATCCAACACAAACAGGACCTATCATTATCA
ACAGACCTTTAAACAATGAAACCGCAAGTACATCAAAAACTAAGTCTCCA
TCAAAGAAAACGGCTTCACCAAAAACTAGTCAGACTCAAGAGGTACAACT
TCCTTTGATCAGTAACAATAAAGATTCAGACATGGTTATTTTCATGCGAT
ATTTACAGGACAAATCACGAGAAGACATCGAACTGCGTGAAAAAGAACTC
GATATGAGACAGAATGAGCTAACTCTAAGAAGACAAGAACTGGAGGAAAC
TAAAAAGATGGTCACGTATTTACAGACATTGGTTGCTACGCAACAAGAGG
TTATTAATAAGCTATTAGAAAAGAATACTAGTgaatagaatttgaaaaaa
tataaggcTCTATCATTCTTGGGATAAATATCTCACTGATAAACCTCATC
GAGTGATTAATGAAGATTTTGCATTCACCTCTTATGATGAGATGGCATAA
GTATTGCTTTATATAATGTTTTCATTTCcatgtaaattttcaaattatat
tttaaataatCATCCTATCAAACTTATTATTTCTTGCTTATTTTTATTCG
AGGTCAACTTTGATTTGTCTTTACCTATGATAGTTTCTATTTGAATTGCT
GTAGATACcacacatacacgtttttttttattagaacccactttataaga
acatttagg Run BLAST on NCBI protein sequence of TCONS_00004520-protein >TCONS_00004520-protein ID=TCONS_00004520-protein|Name=TCONS_00004520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MDELLEVIENEKSLSDEDEINADVHQEGEEAVSSIMLFSENPKVGQQSSK
KKNISLNTPQTQKRILVGKSSPLLEGPLAGSVCRKMYYTRDKDLLLCKEI
LLTNLHDTKKGSPLRKEAWNKVTRKLQSTYDEPFHHRSVRDRFALLIDKF
RNKIDISGYNGKFYEEESELKEALTTLEHLDKIDDETRPRKRTIQIIESN
KVKKRRSKTYPTQTGPIIINRPLNNETASTSKTKSPSKKTASPKTSQTQE
VQLPLISNNKDSDMVIFMRYLQDKSREDIELREKELDMRQNELTLRRQEL
EETKKMVTYLQTLVATQQEVINKLLEKNTSE Run BLAST on NCBI transcript from alignment at sc0000045:619861..627075+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004520 ID=TCONS_00004520|Name=TCONS_00004520|organism=Clytia hemisphaerica|type=transcript|length=7215bp|location=Sequence derived from alignment at sc0000045:619861..627075+ (Clytia hemisphaerica)
cggaatagctattccggccggaacagctattccggttccggcattccgGC
ATTCCGCCGTTCTGCGTTTTGTCTCTACCCccgaaataaaaaatcgagGA
CATCGGAAACTACTTGTTTTTGcaggaaatttggaaaataaaacTACGTT
TAACGAATAGGATATATCATTGGTTTAGATGTGACGTATGGTTTAGCTTC
AAACTGCAGTTCTTGTAATTTCATATTGAAAGCTTCAAACTCATGGATGA
ACTTCTCGAGGTGATAGAAAACGAAAAGTaagttttatatgtttttttta
tgtgcttaattctatttgactttgaCAGTTTGAGTCAGTctaaaacttaa
actcctataccCAGGGGATGTCAATTGAACGTTTGGTtgccaatcgaacc
aatcgaattaaTTGAATTTACTCGAatccaatcgaatgattgattttcga
ttagccgAATTGATCGCGAACGCCAATCAAATTCTAATCGAAACCGAAAA
AcatgtgaaattcgattggtttcgattggagTTCGACAAGCTacgattaa
cgttcgatcaacttggattaacgttcgatcaacttcaGTTAACGttcaat
caacttcgattaacgttcgatcaacttcgattaacgttcgatcaacttcg
attaacgttcgatcaacttcgattttactttaaaaagtttaaattttgca
gggctaaatttggaagattttttgtAACCACCACCATGAAATTCCCTTCC
CGCCAAAAGAAGTTAGCGGAAGAATGTTTGCTTAACTCCTGGGAAAAGCa
atcgaaactaatcgaacatcaatcgaacacCCAATTGAACGGTAATCGAa
tccaatcaaaaaaaaaatgtgaaattcgattggcagtgtggctcgaatcc
ttcagatccttggttagaaaaagctatatctgtttacttttttctcctca
gattcaacaagccatcaaccaacaaaaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNctatttttacccccgctttttaaacagcgtcttctgtgggcgtgat
atcaggcggagacaaaacgccctcatcgtaagattctcgggtcgtcttat
ttaattgtttgttccttttgtcgAGTCTGTCGTTCCTATTATTCATGCTA
AATCCATACACGATGACGTCAATGTTTGGcggcatacctgaaaataaaaa
caaaaagattatcatattatatttgcatgaattacgctaccttatacgtc
attataaaattatacaagaCGAAAGCGAGTCTAGGCCGCCCGCCTAGAGC
GCGggccctaatattttttctctcgcggttttcaggggaaaacgaaagtg
atcgatattcttcgaaggaagaacttgccaaaaaaaccctagacaaaaag
atgtNAGGAAGAATTTGCCAAACAAACCCCTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGGGGAAtacgaaagtgatcgatattcttcaa
aggaagaacttgccaaaaaaaaacctagacaaaaagatgtattttgaggt
tgggaatggatcctgcaaagataaaaaaattttgactaggtgtttttttg
gcaaacccaaaaactctaattaatcaagctaaaaaggttacgggttttga
gcaatcgaggcaaaaatcagcaaaaagctggtgttttccgtaaatctgag
aatcgcgataagatcctcactgattggcgttcgatcaattcagctaatcg
aaaatcaattATTCAATTGGCTTCAATTAAGTTTGATTGATTCGGTAatc
gaatttttcgattgacatcccctggctATACCTATAtacaggattagaaa
ctaggctagtcttacatcttttatcttttccttgaTAACAATACaagaga
cctttttttaaagaggcagccataattaacgtgagattgggtaacttgca
tcagtggaggctaacatgcatagccctcaaatgaaagacttggctggtca
ttaaaatacaactacgcagctcctcTCGCAGCTCTAGTCTACCATTTTTG
TTTTgacttaactttgtattttaatgaccagctaggtctttcatttgagg
gctatgcatgttagcctccactgatgcaagttacccaatctcacggtatg
tactctagcataaaaacaatgatacagccatgcatagttactgtatcatg
catattttaaaaattatgcatggctgtatcattgtttttacgCTGAAGTA
CATAATTAtagctgcctctttaaaaaaaggtctatgctgacaagttgaca
caacacatagGTATGTACATGTaaattgacaagtaatccctgagagattt
tatagaaatctgcaacaaaaacgaaagtggtctcttacTTCTACTGGTTG
CTTCCCAACGCTCCTTCACAGctatttatcaaatttccaccaatgaggtt
gccgcattttTGGCACCCAtagcctttcagtgccttgcacgacgggcggc
atagattttttctcatcttcaatttactgaagaaagcgggaatttgatag
gagagttagattgtcaacaaagtgctgtaaaaaatcattgaataaaagag
gaacttaaaatcttaaatattttaattttgaagaataggttcaaaaaagt
gaaacatagaaaagtttcatttttcattgcattaattgaaataggggatt
tggaaaattttctatgtttggtcttttgcacaaacccctatAACTATGGG
CAAggaccccgttgctaagatgttggcttgaaatttaaaatgaaaccact
caaaacaaaagtaaaaattggcccgtactcgaaatcccgtaatctggATA
TACAATTTTAAATCTATACTACTATGAGTGCTTCCATTAGCATTACATTG
AAGATAAATGAAGAAGGAGCCAGTCTGGAAATTGCAGCTTGTGCCCCGGA
TATCTCCATGATGAGATCTGCTGCCCTCAACTTTTCCCAGTTAAGTTGGC
GCAGCTCCAGCGTAACATTCGCCTCCTTTCCAGACTGGAGAAGGAGAAAG
ATAAaaatgcgctggttaattttgtttaaataggtTTGTTCTATCATATT
GTTGAAAGCTGGATAAATTTCTACTGACACAgaaattttttacagaaaat
taaaGGCACAGTCTTCTTATACTTACTTATTTTACACTTATatgataaag
tctatgtaagactGGATTTATCTCGAAACCCATAATTTGATGTATCTTTA
tgaattttacaagatttttctggattttttggcttttttcaacaaattat
cttcctttGAAtgtaattcaaccttcctttattataacaaaaggtcattt
agacagctaattatcattttttataaaactgAAACGAAATATACTGACGC
ATCAtgtgtaattatgcttctgtttaaattgattggtcgatttttaacgt
ttttgagcacacACGAAAGTATCTAAAGAACCtgaaatttcaaacattta
TAAATTCGAAGATGAAGGGTTTGCTAACGATAAGCAAGTTTAATGGATGA
TGTGCAGCGATCTTGCTTATGTAAGTTTAAAGATTACCTGTATACTAATT
CAAAACTAATGGTGCACTATATACTAGTCTGTGACAGCATGATGAGTTAA
GATTTAAGTTAAACCTGGTGTGAGTGAATACGGATTTTCTTTATCTGCTA
AAAAGAGCTTTTATGAATATTTACTTTCAATGTCACTTACAGTTACTTTA
CTGTTACTTTCAATGTACCTGATTAATATAGAAGttggttttaaaatttc
ttgatattCAAAAGTTTTATAGGCATGAACTTTTCAAACTTCATTGAAGA
ATGTGTTTTGAGTGGCCATGTGGTTAATACTAGCAATTTCTACTAGTATA
ctttatttatacttttttgcaGTATATATGAAGTATATATTTCCATGcag
tatacttaaagtatatGGAATATTGTTCCAAAAATTTAGTACTTTAAGTA
TACTTCCTATAACATCAAAATATatactgaaagtatacttttaATACTTC
TGAAAGTATACTTGCAGTATAAAAAAGCatatacttaaagtatactgAGT
TTTGGTAAGggaaattcaataaatgaccagtcaaaatttaagtttatcct
ttcttctttccaatggaataggaatggttcttttaaaatctttagattac
gagaaaattagttttagagaaaaaccttttttttggcGCACCTGGTATGA
TATTTAACTCGTATTAGGTCTTCTTGTCAACGACTCTAATTTGGGAGTAT
ATGACAAAACATGGGTTGGcaattccaccaccatttcaccaaacctccga
AGTCATTTAATTTGATTAAATGCAATCAGCAaatttagcctgggaatcca
agcgctaaactttgttcacagtctagtttatgttttttttgtatcagcat
aacataacggggaggtagacactgtcctgatatgaaatgtgtgtctgata
tgaaacgggaacacttatgtaaaaataaaacctttagcGTTGGCGCAGGT
AAcgcgcctgcagggagatttttccctgcaatgcaagTTCAGTCTGATTG
GCCAGATTTTGTGcgtacttagcagtacttttgcgtgcattttgataatt
ttgattttaatcaatgaaaaaatagattcattttgaaaacaaatggctgt
tggctggaagtctaaatacatgtggctgatttttggtggtttttagtact
gtagttttgaaagtctttagagcttgtaaAAAGGTTTTAATGGTAAGTTG
Atcatgtgtgtttgcctgggtttctaaagttcagaaagtctgtcaacaag
ggctcacacacagactgtttataacattctgtgttagactaatctacctg
caccaagctctataatctttgaactttgtgaggtgaggtatttttgtttt
ttctaagattattggattcccaggctaacgagaaattatgaaataaacaa
atttgCTTTTTGCACCGAGTAGGTGTAGGTTTTAtcgaaaaatccctagg
aaaatgacagaagggcaaaaccgcaaaaattaaaacccCCAAAAAgctat
ttttcagatttttttccgacCGCGAATTTTAGTTCCCCGAATGAAGAAAG
ATGTTGATACTTTGCCAAATTTACCTTTTTATGAACTTAAGCTTTGTGTG
AGAATGTACCAGTATATAAGTTTAAGACATTTTAGGAGATTTAAAGACAA
TTTTAGACgtttaaaaggggggggggttaagaTTAACAATTGGTTTCTAC
AAACATTTAATCATTTCGATTTATTGTTGATAGGTCGTTATCTGACGAAG
ATGAAATCAATGCAGATGTGCATCAAGAGGGGGAGGAGGCTGTTTCTTCT
ATCATGTTGTTCTCTGAAAACCCTAAAGTTGGCCAGCAGTCTTCTaagaa
gaaaaatatatctTTAAACACACCACAAacacaaaaaagaattttagttG
GTAAATCGTCTCCTTTATTGGAAGGACCTCTTGCTGGTTCAGTATGTCGA
AAAATGTATTACACAAGAGATAAAGATTTATTGCTTTGTAAGGAAATTCT
TCTAACTAATTTGCACGATACAAAGAAAGGAAGTCCTCTACGCAAAGAAG
CATGGAATAAAGTGACACGCAAACTTCAAAGTACGTACGACGAACCGTTC
CACCATCGGTCTGTTCGAGACAGGTTTGCACTACTCATTGATAAGTTCCG
AAATAAAATCGATATATCAGGATATAATGGGaaattttatgaagaagaaA
GCGAGCTGAAGGAGGCTTTGACGACGCTGGAACATCTTGATAAAATAGAT
GATGAAACACGACCACGGAAACGCACCATTCAGATTATAGAATCAAACAA
AGTTAAGAAGAGAAGAAGTAAGACATATCCAACACAAACAGGACCTATCA
TTATCAACAGACCTTTAAACAATGAAACCGCAAGTACATCAAAAACTAAG
TCTCCATCAAAGAAAACGGCTTCACCAAAAACTAGTCAGACTCAAGAGGT
ACAACTTCCTTTGATCAGTAACAATAAAGATTCAGACATGGTTATTTTCA
TGCGATATTTACAGGACAAATCACGAGAAGACATCGAACTGCGTGAAAAA
GAACTCGATATGAGACAGAATGAGCTAACTCTAAGAAGACAAGAACTGGA
GGAAACTAAAAAGATGGTCACGTATTTACAGACATTGGTTGCTACGCAAC
AAGAGGTTATTAATAAGCTATTAGAAAAGAATACTAGTgaatagaatttg
aaaaaatataaggcTCTATCATTCTTGGGATAAATATCTCACTGATAAAC
CTCATCGAGTGATTAATGAAGATTTTGCATTCACCTCTTATGATGAGATG
GCATAAGTATTGCTTTATATAATGTTTTCATTTCcatgtaaattttcaaa
ttatattttaaataatCATCCTATCAAACTTATTATTTCTTGCTTATTTT
TATTCGAGGTCAACTTTGATTTGTCTTTACCTATGATAGTTTCTATTTGA
ATTGCTGTAGATACcacacatacacgtttttttttattagaacccacttt
ataagaacatttagg Coding sequence (CDS) from alignment at sc0000045:619861..627075+ >TCONS_00004520 ID=TCONS_00004520|Name=TCONS_00004520|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000045:619861..627075+ (Clytia hemisphaerica)
ATGGATGAACTTCTCGAGGTGATAGAAAACGAAAAGTCGTTATCTGACGA
AGATGAAATCAATGCAGATGTGCATCAAGAGGGGGAGGAGGCTGTTTCTT
CTATCATGTTGTTCTCTGAAAACCCTAAAGTTGGCCAGCAGTCTTCTaag
aagaaaaatatatctTTAAACACACCACAAacacaaaaaagaattttagt
tGGTAAATCGTCTCCTTTATTGGAAGGACCTCTTGCTGGTTCAGTATGTC
GAAAAATGTATTACACAAGAGATAAAGATTTATTGCTTTGTAAGGAAATT
CTTCTAACTAATTTGCACGATACAAAGAAAGGAAGTCCTCTACGCAAAGA
AGCATGGAATAAAGTGACACGCAAACTTCAAAGTACGTACGACGAACCGT
TCCACCATCGGTCTGTTCGAGACAGGTTTGCACTACTCATTGATAAGTTC
CGAAATAAAATCGATATATCAGGATATAATGGGaaattttatgaagaaga
aAGCGAGCTGAAGGAGGCTTTGACGACGCTGGAACATCTTGATAAAATAG
ATGATGAAACACGACCACGGAAACGCACCATTCAGATTATAGAATCAAAC
AAAGTTAAGAAGAGAAGAAGTAAGACATATCCAACACAAACAGGACCTAT
CATTATCAACAGACCTTTAAACAATGAAACCGCAAGTACATCAAAAACTA
AGTCTCCATCAAAGAAAACGGCTTCACCAAAAACTAGTCAGACTCAAGAG
GTACAACTTCCTTTGATCAGTAACAATAAAGATTCAGACATGGTTATTTT
CATGCGATATTTACAGGACAAATCACGAGAAGACATCGAACTGCGTGAAA
AAGAACTCGATATGAGACAGAATGAGCTAACTCTAAGAAGACAAGAACTG
GAGGAAACTAAAAAGATGGTCACGTATTTACAGACATTGGTTGCTACGCA
ACAAGAGGTTATTAATAAGCTATTAGAAAAGAATACTAGTgaatagATGG
ATGAACTTCTCGAGGTGATAGAAAACGAAAAGTCGTTATCTGACGAAGAT
GAAATCAATGCAGATGTGCATCAAGAGGGGGAGGAGGCTGTTTCTTCTAT
CATGTTGTTCTCTGAAAACCCTAAAGTTGGCCAGCAGTCTTCTaagaaga
aaaatatatctTTAAACACACCACAAacacaaaaaagaattttagttGGT
AAATCGTCTCCTTTATTGGAAGGACCTCTTGCTGGTTCAGTATGTCGAAA
AATGTATTACACAAGAGATAAAGATTTATTGCTTTGTAAGGAAATTCTTC
TAACTAATTTGCACGATACAAAGAAAGGAAGTCCTCTACGCAAAGAAGCA
TGGAATAAAGTGACACGCAAACTTCAAAGTACGTACGACGAACCGTTCCA
CCATCGGTCTGTTCGAGACAGGTTTGCACTACTCATTGATAAGTTCCGAA
ATAAAATCGATATATCAGGATATAATGGGaaattttatgaagaagaaAGC
GAGCTGAAGGAGGCTTTGACGACGCTGGAACATCTTGATAAAATAGATGA
TGAAACACGACCACGGAAACGCACCATTCAGATTATAGAATCAAACAAAG
TTAAGAAGAGAAGAAGTAAGACATATCCAACACAAACAGGACCTATCATT
ATCAACAGACCTTTAAACAATGAAACCGCAAGTACATCAAAAACTAAGTC
TCCATCAAAGAAAACGGCTTCACCAAAAACTAGTCAGACTCAAGAGGTAC
AACTTCCTTTGATCAGTAACAATAAAGATTCAGACATGGTTATTTTCATG
CGATATTTACAGGACAAATCACGAGAAGACATCGAACTGCGTGAAAAAGA
ACTCGATATGAGACAGAATGAGCTAACTCTAAGAAGACAAGAACTGGAGG
AAACTAAAAAGATGGTCACGTATTTACAGACATTGGTTGCTACGCAACAA
GAGGTTATTAATAAGCTATTAGAAAAGAATACTAGTgaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004520-exon-sc0000045-1491911889:619861..620137 | TCONS_00004520-exon-sc0000045-1491911889:619861..620137 | Clytia hemisphaerica | exon |
| TCONS_00004520-exon-sc0000045-1510915933:619861..620137 | TCONS_00004520-exon-sc0000045-1510915933:619861..620137 | Clytia hemisphaerica | exon |
| TCONS_00004520-exon-sc0000045-1575043694:619861..620137 | TCONS_00004520-exon-sc0000045-1575043694:619861..620137 | Clytia hemisphaerica | exon |
| TCONS_00004520-exon-sc0000045-1491911889:625794..627075 | TCONS_00004520-exon-sc0000045-1491911889:625794..627075 | Clytia hemisphaerica | exon |
| TCONS_00004520-exon-sc0000045-1510915933:625794..627075 | TCONS_00004520-exon-sc0000045-1510915933:625794..627075 | Clytia hemisphaerica | exon |
| TCONS_00004520-exon-sc0000045-1575043694:625794..627075 | TCONS_00004520-exon-sc0000045-1575043694:625794..627075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:619861..627075 + |
Blast
The following BLAST results are available for this feature:
|
