TCONS_00004564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004564
Unique NameTCONS_00004564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004564 ID=TCONS_00004564|Name=TCONS_00004564|organism=Clytia hemisphaerica|type=transcript|length=1729bp
ATGTCAGATGTCATTTCGCAATTGATTTGAAAGAGTCACCAATGTATTAC
CACGGCAAAGAAAGCAAATATTGGaCGCAGAACCCATCGTGGTCGTTCGA
CATTTCACCTCACGCTTCGAAACCGCCTCACCTTTCACACTCGTCCGCGC
TTCCAATGACACACGCAGACCCTttgaacaacaacaacaacaacaacaac
aacaacaacaacaacaacaacatcaatAATAACCATCACCATCATCAACT
CGATTCAGTGCCAGGTGAAACAGATTTGAACAGTGCTGTATCATCAGAAA
CGATGCCAGATTCCGAAGATTCCATTTTCAAAGATGACGAAGATGAGaaa
gacaaaagaaaacaaaagaaacgagggatttttcccaaaatggcCACCAA
TATCATGAAAGCTTGGTTATTTCAACATTTAAATcaTCCATACCCCTCAG
AAGAACAAAAACGTCAACTGGCAAATGAAACTGGTCTTACCATACTTCAA
GTTAATAATTGGTTTATCAATGCAAGGCGGCGTATCGTCCAACCCATGAT
CGATGCATCAAACCGGGCAGGTAAATCACCGGTTGTCACAGTATATAAAT
CACGTAAACGTAAAAATTCGGGATCGGACAGTATTTCACCAGGACCTTTT
CCCTATCCACCAATGGGTGGCCATTATTCGGCGCCATATTTAAACGAACA
TTACTCTGGGATGTATTCACAATACCATAATGACATCACAGGAGCTTCAA
CGACTACACCGCATGCGCACTACAGTCCAAGGTCGTACGGGTGTGGCGCA
TCTGATCAACATTCGATGGGTGTCTCTCTACCTCCACAAACCAGCTGTGC
TCCTATGAGACAGCATTCTTCATCTTCTTATGGAACTTATAGGACCTCCC
CGGTCCCTCCTACTCCACAGTCTCCCTTCTTAGGGCACACACATCCTTCA
ATGATGCCACCGTCTACGAATACGCCCAACCTTCATGGTTACCACCAGAC
ACACCCAGCATCTTATCCGCCCCCTCCGCCTCACCAATACACGCCCCACG
AAGAACTCACGCCCCATACCGTTCATAGTGTTATGAATATGCATAATATA
TAACACTTGCCTCCCTTCTTTCTCCCTTATTACGATATAAATAGTTTTca
ccattaattttttctgtgtGTTGTTTTTTATactattttttaagaaattt
tatgTTGCTGTTATATTAAATAAATCATAGTTCATTCTCCTTAGGGCCAT
GTAATGGTCTggagaattttttaaaagaaattttaaccattttgttagat
aaaaaaaagttaaaagcggTCGTTAATATATGTTTTctataatattttta
acctaacTTCGGAGAATCGGTGATGAATATCCTTAAATAACATATTTTCA
CATTTTAGGAAGCTATTTCTAATGGATTCCTTTTGAAAATGCAATCGTTT
GatgtattttgagttttttaaattctaatttttcttaaaattccaGTTGC
TTTTCTGTCTTAActttaaattaattaaaaagtgcttaatatttatttta
tattatttcgcttgattttttaaagaaaatacttttttctgcttttagaa
atttttgacCGTTTAATAATGGGCTGTAAATAATGATGTAGCTTTGtcct
ttttgtaattttaccaTATTTTAATTAAAAGCAAGAACTTTAGTTCTTAC
CTTATTATatgagaaaatttgaaatagaa
Run BLAST on NCBI

transcript from alignment at sc0000045:648923..658947-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004564 ID=TCONS_00004564|Name=TCONS_00004564|organism=Clytia hemisphaerica|type=transcript|length=10025bp|location=Sequence derived from alignment at sc0000045:648923..658947- (Clytia hemisphaerica)
ATGTCAGATGTCATTTCGCAATTGATTTGAAAGAGTCACCAATGTATTAC
CACGGCAAAGAAAGCAAATATTGGGTAAATTGAAGATGTATTATTGATTT
ACACGTTTTATTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTC
GAGGCCCAAAAATTTAAGAACATTCTAAGAACATTCTAAGGCTTTGGAGA
CTTAAAAACATGCATTTTCTCAAGAAATTAGATCAAAATGCTCAAAAAAT
GCTGAAAATAAGAACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAA
ACTAAGAACATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAA
AAAACGTGTAGCACCTTTTTTTACCCTCAAAACAAAGTAATGAAAGTGTA
GAAAAAAATGAGACATTCTAAGTAATTAAAGGTAAACATGGGGAATAAAT
TTGAGAAGTTGTCAATGTAAACGCGGGGTAGAGATTGACTTTTTGTCAGT
TTTCTTTTTTTTCTGCCACTTTGTCAAGTTGTCAACTTTCTTTTTTTTAT
TGTATTTGAAGGTCATCTTGTCTTGATTGATGTCTTCCAAATGTCCCTTT
CTTTGAATACGTTTTTCACTATGTACATTTTGCTATTTTCTTCTACGTCA
ACTAGTTGCAGTGGCAGAGTGTTGTTACTTTCTGTGTTCACATTGTTTTC
ATACCTAAACCTAAAGTCATTTTGTGAGTCATGAACTGTATCGCAAATTA
ATTGTTTTTGGAGTTTTTTTTGGAAGAATAGTGTTTTATTTTCTAATTCG
AAACATGGTCGCAATGCTTGGATATAATTTTAAGGTATTTATCATTTTTG
CAATTTGAAATTTCGCTTCATGCTGGAAATTCCTTAATCTTTCAAAATCA
ATATTGTTTTTTTTTTCAATAATACGCATCAGAACATCACCTAACATTTT
ATAATTCTGATATATTTCTTCCCTGCTAATCTAATGAAAATCCTCAGCGC
TGCTACATCTTAGGTTCTGCAGTTTTCAAAATCTTTTTTATCAAATTTCG
TCATCGGTTGATTTAGTTGCAACATTTTGCCTTGTTTTTTAATGGGGTGA
AGAAATTACGAATGGTGGTTCTTAGGACTTTGGCATTGTTGATAAAAAAA
TGTGTTTTGTTTATTTGTTTCTTTTCTCGAGTAGAACCGTAGGAAATTGT
TAAGAAGAGGTTGAGTTTATTTTTCTAACGCATCGAGTTCATCTCTACTT
CACGAACTGCAGCAGTGTGGAATCATTTAATTTGCCTTTCGTTACTTCGA
GAGTGTGTAGCTGCAGTTAATAATTGACAATTTTACGATAGTAGTTTGTT
GTAATCAAAAAAAACATTTTTGGAGTCTGAGGCTTAATTTGTAAGTTGTT
CTCTGTTATACTAAACTATGATATTTAAATGTGTACTTCTTCTGATTGGA
TTCAATTGACGTCATAACTCGGGTTTTTCATAACTCGGGTTTTCATAACT
TGGGTTTTTTAACTCGGGTTTTCCAAGCCTCTTTCAGTTCGGATTCAATT
GATGTTGTGGTGCAATAATACAGATCTTGACAAATCCCAGCTACATTAAA
GTAAAAGACCAGCACTGGCATTCCAGTCTACAATGTGCCGGATACCGATT
CCATTGGAACCCTCAATACTTTCATATCTTAATCTCAACCTTCTCAATCA
TCTTTCAATCTGTTCATCAATGGGTTTGTTACTCTGCTTGGCTGGTTGGA
TTTGGCTTTAGGTTTGTTGAAGTTGCTTGTCGAATAAATGATTCTGAGGG
ACCGAAAGATATCTGCAACATCTTCACATGAAAATTTGTTTGCCTGTTTA
CTTACTAAAAAAAAGCTTGAATAGAAAGAGCCCTTAAGAATTCCTTAATT
CATCATCAACTTCTAATGTTTTNTGTTTTCCTGTTTACTTACTAAAAAAA
AGCTTGAATAGAAAGAGCCCTTAAGAATTCCTTAATTCATCATCAACTTC
TAATGTTTTTTCCAAAACACTAATGACGTCATGCTAAAGGGGCCTTTTCT
CTATTATGAAAAACGTTAACCAAGTATGGTCAATAATTTTTCCTTGACTG
GATAGGTAGTAAAATTGACTAAATCTAAACTGCAACAGTTTAAAAATTTC
AATTTGACTCTTCGCTGATTCAATCGAAGTGGAACGGGGATCTAATGTTT
TTGAATTAAAAAAAGATTCGAATATTAGAATAAAGCATTTTAAGAGGGTT
CCCTTTGGCGCGGAATGAGGATTAGTTTGAATTATAGAAATATTCAAATA
CTAGAAGTTCAAATTAGCAAGATTGTACTGCATTCGTTGGTATGCTGCGT
CTAGTTAATTCTAGGCCAATAAATGACTGTTTCCTCAAGAAATGCAATAC
AAATCATTTTTCCAGCAATCTAGCAAGGAACCTTGGCTTTTTTAAGGGTA
AGAATGAGGGATAAGCTGACGAAAATAAGAATACAGTTAGAGTGCGAAAA
GAAGGCCGTTATCCTTCTTTGTTGACAAAACAGGAAACCATCTCTTTGTT
CTTAACACCTTTCGTGTTACCTATATTTTTTTCTCCTTTTTTTTGCGTTT
ATTTTGTTTGATACTTTGATCAGGTGCTTTTTCGTGCCTTGACACGAGCT
TTTCTGAGAATGATGATAGAACTTTCATATTTGATATTTGCTAAATGTTA
GTCACCTGTGGAGTTTTCAATTACGTAAGGGTTTGAGTTTTATTTTCCTT
TTCTGATATAAAAATAATTTATAAAAACAATGAGGCTCAAAAACGACCAA
AAGTAAGAACAATTTTAGGGTCAAAGTAGTAAATATTAGGAAATTTTAGG
TATAGAGTACCTCACTTTTGTTTTAAAAACAAGAACAGGATAAGAACAAT
TTGAGGCTCAAGGTACAAGAAAAAAATAATCTTCTGATTCCGCTCTGATA
AAAAATTGGTTTATAACAAAAATTACCCAAATTATTTAAAGTGGTAAAGT
TTTCGCCTCATTTAAGTCACTTAAAGCTAAGGCTAAACAACACCTAAATT
CTTCATTTTTTTATGAATCAAATTAATTGATTTTTTATTGATTGGAAAAG
ACCTCGCGTGGAAAATAGCCCGTTTTCTTCCACAAATATGAAAGAAGCTT
AGTCAGCGGTATTGGTCTTGGTGTCCCAGCTCTCGGAAATAGCCTCTCAT
GGAATTGTTGACTCTTCAACCGCAGCACTTCCTTCACAAAGGCTTGCAAA
TACATGCATACAACAAAGCAAGTAAAAATTTGCGGCTCAAGCACTTTGTC
TTATATTATATCACAGTGGTGTGCGAAGTCTAACAGGTTGGACCATTATT
TCATGATATTCACCTTTATCTGGTATCGTTATTTTTCACCTATTTTCCTC
AACTTTGAATGTCTTTCAGGCCTCCTCTTATATACCGTGAAGCTTCATTC
AAAAAAGTTGGAGTTAGACTTAAATTCGCTTATTTTTTGAGTTGTTATAA
AAGCATTTTAAGACTCTCTCGTGAAAGAATTCAATTTGCTTGACCCTTGA
CCTAAGCTACTAAGCAACTATGGGATATCGTGCCAAGAGGAATTTTATGA
CTCCTTTCTCAAAGACCACCCTATGCTTATAGATACAATAAGTAGGAGAG
AAATTTGTTCAATTTTAGAGGAAGGATCTGAAAAATTCGAATGAACCTTC
AAGTCATTAAGTGATTTTATTGTTATTTTTGTCTAAATATAGTTATTACC
TGTTTCTAATCCGGATTCGAAATGAACCTCATCAAAATGCAAATATCCCC
AGTTACTCGAGGAAGTTTGCAACTTTTTATTGTTATTGATTTTGACTTTA
AAAAACCGCAAAATTTGTTTAGGAAACGGGAGAAACGGGAAAGATATCTG
TTCACATGCGAGAGTCATAGAAAGAAATGCCGTAAAATAAGGGACTTTTT
TCTTCCCTTTTCTGTTTCTCCCTTCAGCACCCCTATCTTCTCTAAAGGCC
GGTAATTTTCTAAAACATTATGCGGTTTAAGGCATTGTTTCCACTTCAAA
ATAAAAGCAATTTTTTTGTTTTCTTATTAAACATACTTGTATTATAGTTA
TAAAACTTTTAGGGTATCGCAGTCTTTCAAGAAACTTTTAACATTTACAT
TTTTTGTTTTATCCTTTGGGCATCAGGATATTGGTTAAATGGTTTCATTG
GGTTTTTAGGGAAGTAATTTGATTAATATAGCGTTTGGTGATCTTGAATA
TTTATAAGGAGGAGCAAAAGAGATTTTTGTTTCATTCAATTGAAAGGGTT
TGTTCGTGTTTTCCCACTCACAATAAAAGGTAAAAAATTTCTTGACAGGT
CCCATCAAACATAAGATCCCTTGGTATTATTTCAAATGACAGAATTATGA
CAAAGTGGTTTTTGAACTTGATGGTTTAGACTGAAAGTGCCTAGAAGCTG
TTTTAACCATTGATTGGACTTATTTTTCTTAGAATTTAATGTTTCAGATT
TAATTTCATAATCTTTTGGAATTTTTCCTGGTTCCATTTTTTCTTGGCAA
GGTTGAATTTTTTGAGAACTCTTCCTGAAGTATATAACAATATAATTAGG
TACAATAGGCACAGAAGAAGGTTGAAATGAACTTGTCTCAATGTAATTTA
GGTATAAACCATCCCTGTATTTCGCTTAGTTCGCCAGCTCTCATTAAGAA
GACCGGTTGAAGTACAGTACCACTAGTTGCAATTAAATCAACCGAAGTCG
TTAGAAATCAAAAGTTCAATCACAACGACCCTACCATTGGTGGATATACT
TAAAGAGCGTGTAAATATTGAATTACTTTTATTTTATTCAGACGCAGAAC
CCATCGTGGTCGTTCGACATTTCACCTCACGCTTCGAAACCGCCTCACCT
TTCACACTCGTCCGCGCTTCCAATGACACACGCAGACCCTTTGAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACATCAATAATAAC
CATCACCATCATCAACTCGATTCAGTGCCAGGTGAAACAGGTAAATAGTT
TTCTCTTTATTCACTTACATGAACTGAACCTTGAGGAGTGGAGACCATCA
AATGTGGTGGATCTCTGAAGTTTCAAAATTTATGACGAAGGGTGTTTCTT
TTATCCATACTCCTTATAAGGAAATAACACTCTCCCTCATAAAATCTGAA
GCCTCCTTCGATCAGCAACTGTGATCTATAATGTTTCCCGCCCGTCCACC
TACGCCACAAAACGCCATAAGAACCGTTTCTAACCGTTTCTGTATATCGT
CAATGGAATGTTTTTTGAACATTGAAGCTAGTCGGCTCAAATCCACACTT
TTTCGATATTCATTCAATCGATAATCAATCAATGGACATCAGACGATTGT
ATGTAAATCACCTTAGGTAGGAATCTCGTTGGCACCTGCTTCAGTCTGAT
GGGGAAATTTAACATTAAAATAAAAGATGAGCTTGGAGATTGATTCTCTG
GTGGCGAAAGTGAGTAAACCATCGCACGCAGGTTCATCTGTAGTTGTGCT
CAGAACTAATTCAATTTGATCGTTGAGAATGAATAGTCTCCATTCACTAA
ACGAATGGCAACAGTCACGCGATGGGTGCGCTAAAAATTATCAGCATGAT
CAGAGCTTCGAAATCAGAATGTATATTCATCAATTCAATTTGTTCTTTGT
TAACAATCTAATAATCTATACTTATGATGGCCAAAGACTACACGTTTTTT
ATAAAAACAAACTAAAGAACACGAGGCTTTGACAGCAAAAATATTAAGAA
CAACTTGAAAATATGTTGAGGTTTTGCCAGGAGTTTTGCGGAACCTTGAA
CACCCGATTTCTTAGGAAAATAGCCAATGTGGTAAAAATATGAATATGTT
AAGAAAATCTTTTGGCTTAAAACGCAAAAATCAAAATCCGTAGGCTTTAA
AAATTTTGGATGTTCTTAAAAAAATGTGTATTTGAAGAACGGACCTATCC
CAATCTAAGACCACACCCATGTTCAAAAAATGTTTTCCTCCAGGAGTATT
TATCGAAGATTTGTTTAGATGTGATAGCTGATAATAATTCATCATTCATT
TATTTCGAAAGTTTTGACACTAATATCAAGTGATCACCTTGAGCTGCTTG
ATTGATTACAATCTATCCCTCTTTCTTTATTTTCTAATCCATGAACAGGA
GGATTTGGAATCCTATCAAATTAATATTTTTTTTTACTTTTCCCGACATT
AAGTAGTTTTGATCCGGCGACAACCTATTTTTTCTTCTCCAGCCAAAGTT
CATAATATCTGGAATGGGTTAATTTTTTACAATAAAAGTGGACGCTGAAA
TTTGACCCAGTGAATTGATAAATATACAACAGTAATATGCGTTTTTTTTT
TTATAAGTACGTCAAAAATTTTCGAAGCCTTCGGATGTTCTTAGTTTTTT
AGATTTGAAGCCTAAAAATGTTCTTATAATGTTCTTATTTTCAGCATTTT
TTGAGCATTTTGATGTAATTTCTTAAGAAAATGCATGTTTTTAAGTCTCC
AAAGCCTTAGAATGTTCTTAGGTTGTTCTTAAATTTTTGGGCCTCGAAGC
CTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAACGTGTATGCTTC
TAGCTATACCAGCCTTGTTAATCTAATATGATTACACCATTACACAATTT
TAAGATATTAGATTACAATGGACAATCAATACCCATTTTCGATGAATTTG
TAGGACAATAGAATTGTTCTCAAAGAGTGCTTAATTAAGCTCTTCATTTG
ATAGCGTGAAATTGTAACCTACTACAAGTCCCCGTAATTGAATTTATAAG
CCACACTTTCCTGTCACAGTTTCAAACAGATTCCATTTTAAATGATTGAA
ATGTCTACTAAAGACGGCGTGTGAATGAATGGAAGGTTGGTTTTCTGTGG
AAGTTTTTTAGAGGAAGAATTTTCTTTTGAAATTTTGCTTGTGATGAAAG
GCATTCAAGCGTGTGAAGTATTTCTTTCAAAAGTGTCAAAAAGTTTATTC
GTTTCTTGTCTTCAGGCTGTAAATGTTATCAGTTTTTCAATCAAAATTTC
TGTTTGGTTCAAATATGGTTCAATCAACATATTTTTGGTTCAAGCAGTAA
TTTTTAGAAACTATTTTTGTAACAAGGTTTATGTTATAGTTAGTGTAATA
ATTCGTAAACAAATGTTCTTCGCTATACAGCTGGTGCGAAAATTTTCGAA
CATCCTGTCGTAAACTTGTCATATCGAAATTGCTCGTAGCTATTCAAACA
GTGTGAAAAGTGTCGAAATTTCATGTCGAAAATAAACTTGTCTAGGGATT
ATCTGTCATTTGCTAATTATTTTTTTGGTAAATTTTTTTAACATCTGTTT
ACGGTAAGTGGCATTTCTTGTCGTGAAAAACTGACAAATAAATTTTTTAG
ATGATACCAAAATAAAATTATTTTGTGAATTTCATTGATGGTTAGCTATA
TGGGCTCTTGGTTTTCTTGTAAATTTTGTAGAAGAGTTTTTGGGTAGAAA
TCGCAAGTTTAACCATCATGGGAGAGAAAGATGTTTATTGTATTGATAAA
ACTATGGCTGTACTGTATAACATTATAATGTCATTGATAGATTGCAGGTT
TGTTAGCTTTGAAAATCGGAATGTGTCTTTTGTAGATGTTCTAAAAGAAG
TTGGCGTGAAAAATTACGGAGAATATACGTGAATGTATTTTTGGTCTAAA
ATGTGAAGTTACAGTGATGGTAAATAGCCAAGCCTGGCTATTTCAAACGA
AGATGTGTTGATGAGACCTCGACCAGTAATCACGTGGTCAAATTTCGCCG
TTAGATTTCTGTTGACCCTAAAATTGCACACTTTTTATGAAAAAAATTCT
ATATGGAGATTGAGAAAAGTCACGATAAGAAAATTTATAAAATGTAACCC
AAAGGAATTATTATCTTCGGTAATTAAAAAACGAATTTATTCTTCTTTCA
CCAGATTTGAACAGTGCTGTATCATCAGAAACGATGCCAGATTCCGAAGA
TTCCATTTTCAAAGATGACGAAGATGAGAAAGACAAAAGAAAACAAAAGA
AACGAGGGATTTTTCCCAAAATGGCCACCAATATCATGAAAGCTTGGTTA
TTTCAACATTTAAATGTAAGCAGTATATTCAATATCTCATTTAGGCTTTG
CGAAATTGAATACGATTGTAATTTTCAAAACCACTCTTGTTTGAGTTGAT
TCTACTCACATGTTACCTACTTAGGCTCATTAGTTTGGACTCCCACAGTA
ATAATGTAATAACTAAATTGATGCCTAAGCAGATTATTCACGTTAAAGTG
TTACCCCATCTATCAATGCATTCATGAACCTATCTGCCGCATCTGTAACT
GAAACTTTTATGAATATTTAACACTTCTTTTTTTTCTAGCATCCATACCC
CTCAGAAGAACAAAAACGTCAACTGGCAAATGAAACTGGTCTTACCATAC
TTCAAGTTAATAATTGGTATGTTTTCCAACAATCTTTTAACAACCTGGCT
ATTCGTAAACGATAGACAGTATTCCGGTTCTAGAAGGCTGCCCTGTCCGT
AGACGTCAAATTTCATTTTTTTACCTTGCGCTGTAATTTTACATAAAACT
ATTTGTTTTTTTTTTAGATTGACGATGTGCTCAAGCGCTAAACATTGAAT
TTCAAAAATTTTCATCATCTGTTGAAACTATAGTCCCCGATCAATACTTT
TCTTTTCCCTTTTCAGAAAAGCTTATCATCGTCAATATTTTTTCATATTT
CATGTAGGTTTATCAATGCAAGGCGGCGTATCGTCCAACCCATGATCGAT
GCATCAAACCGGGCAGGTAAATCACCGGTTGTCACAGTATATAAATCACG
TAAACGTAAAAATTCGGGATCGGACAGTATTTCACCAGGACCTTTTCCCT
ATCCACCAATGGGTGGCCATTATTCGGCGCCATATTTAAACGAACATTAC
TCTGGGATGTATTCACAATACCATAATGACATCACAGGAGCTTCAACGAC
TACACCGCATGCGCACTACAGTCCAAGGTCGTACGGGTGTGGCGCATCTG
ATCAACATTCGATGGGTGTCTCTCTACCTCCACAAACCAGCTGTGCTCCT
ATGAGACAGCATTCTTCATCTTCTTATGGAACTTATAGGACCTCCCCGGT
CCCTCCTACTCCACAGTCTCCCTTCTTAGGGCACACACATCCTTCAATGA
TGCCACCGTCTACGAATACGCCCAACCTTCATGGTTACCACCAGACACAC
CCAGCATCTTATCCGCCCCCTCCGCCTCACCAATACACGCCCCACGAAGA
ACTCACGCCCCATACCGTTCATAGTGTTATGAATATGCATAATATATAAC
ACTTGCCTCCCTTCTTTCTCCCTTATTACGATATAAATAGTTTTCACCAT
TAATTTTTTCTGTGTGTTGTTTTTTATACTATTTTTTAAGAAATTTTATG
TTGCTGTTATATTAAATAAATCATAGTTCATTCTCCTTAGGGCCATGTAA
TGGTCTGGAGAATTTTTTAAAAGAAATTTTAACCATTTTGTTAGATAAAA
AAAAGTTAAAAGCGGTCGTTAATATATGTTTTCTATAATATTTTTAACCT
AACTTCGGAGAATCGGTGATGAATATCCTTAAATAACATATTTTCACATT
TTAGGAAGCTATTTCTAATGGATTCCTTTTGAAAATGCAATCGTTTGATG
TATTTTGAGTTTTTTAAATTCTAATTTTTCTTAAAATTCCAGTTGCTTTT
CTGTCTTAACTTTAAATTAATTAAAAAGTGCTTAATATTTATTTTATATT
ATTTCGCTTGATTTTTTAAAGAAAATACTTTTTTCTGCTTTTAGAAATTT
TTGACCGTTTAATAATGGGCTGTAAATAATGATGTAGCTTTGTCCTTTTT
GTAATTTTACCATATTTTAATTAAAAGCAAGAACTTTAGTTCTTACCTTA
TTATATGAGAAAATTTGAAATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002564XLOC_002564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004564-exon-sc0000045-1575043694:658874..658947TCONS_00004564-exon-sc0000045-1575043694:658874..658947Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1575043694:653908..654106TCONS_00004564-exon-sc0000045-1575043694:653908..654106Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1575043694:650783..650943TCONS_00004564-exon-sc0000045-1575043694:650783..650943Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1575043694:650432..650508TCONS_00004564-exon-sc0000045-1575043694:650432..650508Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1575043694:648923..650140TCONS_00004564-exon-sc0000045-1575043694:648923..650140Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1510915933:658874..658947TCONS_00004564-exon-sc0000045-1510915933:658874..658947Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1510915933:653908..654106TCONS_00004564-exon-sc0000045-1510915933:653908..654106Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1510915933:650783..650943TCONS_00004564-exon-sc0000045-1510915933:650783..650943Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1510915933:650432..650508TCONS_00004564-exon-sc0000045-1510915933:650432..650508Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1510915933:648923..650140TCONS_00004564-exon-sc0000045-1510915933:648923..650140Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1491911889:658874..658947TCONS_00004564-exon-sc0000045-1491911889:658874..658947Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1491911889:653908..654106TCONS_00004564-exon-sc0000045-1491911889:653908..654106Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1491911889:650783..650943TCONS_00004564-exon-sc0000045-1491911889:650783..650943Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1491911889:650432..650508TCONS_00004564-exon-sc0000045-1491911889:650432..650508Clytia hemisphaericaexon
TCONS_00004564-exon-sc0000045-1491911889:648923..650140TCONS_00004564-exon-sc0000045-1491911889:648923..650140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:648923..658947 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.566452	0	1.03327e-06	0.107738	0.0626821	2.1666e-06	0.000284587	0	0.146372	2.25292e-06	0	5.02138	3.93249	1.132	1.43209	0	0	0.959352	1.16495	4.45202	1.01819	0.462418	5.18664e-05	40.9544	33.1973	3.5192	2.18631
Blast
[Close]
BLAST of TCONS_00004564 vs. Swiss-Prot (Human)
Match: ME3L1 (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.862e-35
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 3 
Query:  372 RGIFPKMATNIMKAWLFQHLNHPYPSEEQKRQLANETGLTILQVNNWFINARRRIVQPMIDASNRAGKSPVVT 590
            RGIFPK+ATNIM+AWLFQHL+HPYPSEEQK+QLA +TGLTILQVNNWFINARRRIVQPMID SNR G+    +
Sbjct:  165 RGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFS 237
The following BLAST results are available for this feature:
BLAST of TCONS_00004564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ME3L11.862e-3580.82Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]
back to top