TCONS_00004604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004604
Unique NameTCONS_00004604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004604 ID=TCONS_00004604|Name=TCONS_00004604|organism=Clytia hemisphaerica|type=transcript|length=431bp
gtcaaaagTATCAACTGTGAATTGTAAGTTTTTGTCAAAGGAattaaatt
tattcaaaacatAAGGTATATCGTTTGGTTTGATCAGCAGAAGAGTATCA
TCAACGAATCTCATGTAATGTTTGATGTAGATTTCTCAATTAATTcattg
acaattttgatttcaaactgGGTCATAATGATGTTGGCTAGAACAGGCCC
AAGGGACGATCCCATTGACACACCGTCTATctgttcaaaaagtttttcat
taaAGGTGAAAGCAGTTTTCTTGCAGGAGtcattcaaaagctttttcaaa
GTGCGTTTCTGTAACTTGGTTGTAATGAGTTCTTGATCATATACACGCTT
AAGAATAATATCGATTGTtttctttaaagggacattagtAAACAATGAGA
CAACGTCAAATGAAACGTACTGGAAGCCTTC
Run BLAST on NCBI

protein sequence of TCONS_00004604-protein

>TCONS_00004604-protein ID=TCONS_00004604-protein|Name=TCONS_00004604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
EGFQYVSFDVVSLFTNVPLKKTIDIILKRVYDQELITTKLQKRTLKKLLN
DSCKKTAFTFNEKLFEQIDGVSMGSSLGPVLANIIMTQFEIKIVNELIEK
STSNIT
Run BLAST on NCBI

transcript from alignment at sc0000045:815757..816187

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004604 ID=TCONS_00004604|Name=TCONS_00004604|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0000045:815757..816187 (Clytia hemisphaerica)
GAAGGCTTCCAGTACGTTTCATTTGACGTTGTCTCATTGTTTactaatgt
ccctttaaagaaaACAATCGATATTATTCTTAAGCGTGTATATGATCAAG
AACTCATTACAACCAAGTTACAGAAACGCACtttgaaaaagcttttgaat
gaCTCCTGCAAGAAAACTGCTTTCACCTttaatgaaaaactttttgaaca
gATAGACGGTGTGTCAATGGGATCGTCCCTTGGGCCTGTTCTAGCCAACA
TCATTATGACCcagtttgaaatcaaaattgtcaatgAATTAATTGAGAAA
TCTACATCAAACATTACATGAGATTCGTTGATGATACTCTTCTGCTGATC
AAACCAAACGATATACCTTatgttttgaataaatttaatTCCTTTGACAA
AAACTTACAATTCACAGTTGATActtttgac

Coding sequence (CDS) from alignment at sc0000045:815757..816187

>TCONS_00004604 ID=TCONS_00004604|Name=TCONS_00004604|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000045:815757..816187 (Clytia hemisphaerica)
GAAGGCTTCCAGTACGTTTCATTTGACGTTGTCTCATTGTTTactaatgt
ccctttaaagaaaACAATCGATATTATTCTTAAGCGTGTATATGATCAAG
AACTCATTACAACCAAGTTACAGAAACGCACtttgaaaaagcttttgaat
gaCTCCTGCAAGAAAACTGCTTTCACCTttaatgaaaaactttttgaaca
gATAGACGGTGTGTCAATGGGATCGTCCCTTGGGCCTGTTCTAGCCAACA
TCATTATGACCcagtttgaaatcaaaattgtcaatgAATTAATTGAGAAA
TCTACATCAAACATTACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002598XLOC_002598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004604-exon-sc0000045-1491911889:815757..816187TCONS_00004604-exon-sc0000045-1491911889:815757..816187Clytia hemisphaericaexon
TCONS_00004604-exon-sc0000045-1510915933:815757..816187TCONS_00004604-exon-sc0000045-1510915933:815757..816187Clytia hemisphaericaexon
TCONS_00004604-exon-sc0000045-1575043694:815757..816187TCONS_00004604-exon-sc0000045-1575043694:815757..816187Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004604-proteinTCONS_00004604-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:815757..816187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15981	0.467519	0.361889	0.354052	2.58615	1.0218	1.64368	1.34645	0.538674	0	0.647634	1.17076	0.106284	0.662264	0.0907452	0	0.719811	0.368892	0	0.177768	0	0	0.183235	0	0	0.306263	0	0.467725	4.78916	3.79509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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