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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004624 ID=TCONS_00004624|Name=TCONS_00004624|organism=Clytia hemisphaerica|type=transcript|length=1217bp
GTTAAAACTGCAATCTGCTTACATTTCCAGCACTTGCTTTATTGTCTAAG
ATAAAAATGATGTGAATGGTAGTAGTTTATGGTAGTTTTGATGGATTCac
tgcattttttttgctttaactCTCACTAAGGTCCCCAATAAACTGTCCTC
CAGTtattaaaaaattccattctTATTAGAAGccctgtttatttattttt
agctAAGGAAAGCTGagttgctctaaatagcctggtttTAATAATTACCT
TATGTTGGGTGGTTTCGAACCCCAGACAGCTTATCCCTTTCTCCTGAAGG
GTGTTATCCTTTAAAAGTATTATTTTAAGCTGTTAAAAATTCTTATCACT
TAATTTTAGTGGATACTTTTAGACAATCGTATGGAAAAGATTTGgatgtt
ttatttcattttcttcagATACTATAAAATACTAagtataaaatcaaaat
gatgTGCGGTGGTGTTGGAAATGCTAATCCTGCTGATGAGGAAGTTATTG
GAATCTTGAATCAGGTTAAAGGACAAGTTGAAGGCAAAACAAATGATAGT
TATGATGTATTTGAAGCTCATTCTTATTCAACTCAAGTTGTTGCaggaac
aaatttttttatcaaggtAAAAGTTGGTGATGGAAAATACATCCATGTCA
GGGTATTCCGTCCATTACCACACACCAATGGTAGCCCTGAAGTACATTCT
GTACAAATGGATAAAAGTGAACAGGATGCTATTGTTCATTTTTGAAGAAG
TGcacaaaaaatagaaattatttCTAATGGGAATGTCTTAGGATAAAGTG
tggttttttttaatgataatttttttttctaaattataCTGAAATGTATA
TAGTCAAATTTCTAGCTCAACAATATTTTGCATTCACCAATTTTATTTTT
CCGGTAATAACATTGGAAACAATATCTAACTAAACAATATAACTAGAAAC
TGTCATAGGTTTCACTTTCTTACGGaggttattttttgtttactatgTGT
CTACAACCAAGTCTTGCTTCTAAACATTTTCAAGttacaattatttttta
ttataatataattttcacagtcatgaaataatttcttaaagaaaaagaat
gaggaattaaaaataatatctaaaaatggaaaatgatTATTTCATTATAA
AAATGTATATATGATTTTGGGGATCATTTTATTCGTTTGAATCTGTTTAT
TCGACAAAATGTTTGAG Run BLAST on NCBI transcript from alignment at sc0000047:378856..381125+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004624 ID=TCONS_00004624|Name=TCONS_00004624|organism=Clytia hemisphaerica|type=transcript|length=2270bp|location=Sequence derived from alignment at sc0000047:378856..381125+ (Clytia hemisphaerica)
GTTAAAACTGCAATCTGCTTACATTTCCAGCACTTGCTTTATTGTCTAAG
ATAAAAATGATGTGAATGGTAGTAGTTTATGGTAGTTTTGATGGATTCac
tgcattttttttgctttaactCTCACTAAGGTCCCCAATAAACTGTCCTC
CAGTtattaaaaaattccattctTATTAGAAGccctgtttatttattttt
agctAAGGAAAGCTGagttgctctaaatagcctggtttTAATAATTACCT
TATGTTGGGTGGTTTCGAACCCCAGACAGCTTATCCCTTTCTCCTGAAGG
GTGTTATCCTTTAAAAGTATTATTTTAAGCTGTTAAAAATTCTTATCACT
TAATTTTAGTGGATACTTTTAGACAATCGTATGGAAAAGATTTGgatgtt
ttatttcattttcttcagATACTATAAAATACTAagtataaaatcaaaat
gatgTGCGGTGGTGTTGGAAATGCTAATCCTGCTGATGAGGAAGTTATTG
GAATCTTGAATCAGGTTTGTAAAGATCTTTATAATGCGTAAATTAAGGTA
TCACACAATCAGAGTAATCCATATCTTTACTTTTTAATGACTTTCTTGAC
CCAGATGATATCCAAACTGATTTTTATTGATTAACATAACTGATAGAAGG
GCAAAATAAGTCAATGAATCTGAGGAAATTGTCATAAAAATGTCattgaa
aaatgttaaataaaactcaatttgatacaccttttcaaagtatttttgaa
aatcttcaaaagtaGATTTTTACTTCTAAAGCTTATACATTTTGAACCAC
TGCAAactaaattcaaaaagtttagtATAATACATGTTTTCCTTTTCTCT
TTAGAATTCAGaaagaattttgcaaaaaaatcatattaTACAGAAACATT
TAGTTATCAAATCTACTTCATATACTTTTCTGTTTAATAATTTCAGGTTA
AAGGACAAGTTGAAGGCAAAACAAATGATAGTTATGATGTATTTGAAGCT
CATTCTTATTCAACTCAAGTTGTTGCaggaacaaatttttttatcaaggt
ATTTTTTTATCAAGGTATATTTTTCAACGAAAAGGCTCAGTATACtttaa
ggcaaaaataaaaaaatatcctGTTTCCATAAATCGACCcgttgaacttt
ttttcgagAGTCATCCGgccgcaaaaaaaaaattttttttataagcaacg
tgattttttagataatctaaagATTAGTTTTTATATTActaaatagtaaa
aaaaaataaccTGCTTATTTGAAGGTTCAAACCTGGTTGCTTATGAAATG
TGTATTTTTTGATTGTATATTTTACGctgtattatttttgttttttgaaa
ctATAAAAACAATCTATAATTTCTACAAAGAAAATCAAGGAACAAAGCTA
AACACACTTACAAGTTTTGTATTtctgtttaaaaagaaaaaaatcaagac
tgtaagaaaaatttcaaaatgtaaaaaacaaattatacgGCCGGCcggct
gattttttttcatcagcTACATTTCCGGAAACTTTTGGCCTAACTTTTGC
TTTATCTGAGAATCTAAACTTAATCAAAATTTTCGTATTCAATGTTTTTA
GTTATTATTGTTTGGAgtaattttaaagatattacaTTCTCCAATTAtaa
tgctttctttttctttcaggtAAAAGTTGGTGATGGAAAATACATCCATG
TCAGGGTATTCCGTCCATTACCACACACCAATGGTAGCCCTGAAGTACAT
TCTGTACAAATGGATAAAAGTGAACAGGATGCTATTGTTCATTTTTGAAG
AAGTGcacaaaaaatagaaattatttCTAATGGGAATGTCTTAGGATAAA
GTGtggttttttttaatgataatttttttttctaaattataCTGAAATGT
ATATAGTCAAATTTCTAGCTCAACAATATTTTGCATTCACCAATTTTATT
TTTCCGGTAATAACATTGGAAACAATATCTAACTAAACAATATAACTAGA
AACTGTCATAGGTTTCACTTTCTTACGGaggttattttttgtttactatg
TGTCTACAACCAAGTCTTGCTTCTAAACATTTTCAAGttacaattatttt
ttattataatataattttcacagtcatgaaataatttcttaaagaaaaag
aatgaggaattaaaaataatatctaaaaatggaaaatgatTATTTCATTA
TAAAAATGTATATATGATTTTGGGGATCATTTTATTCGTTTGAATCTGTT
TATTCGACAAAATGTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004624-exon-sc0000047-1491911889:378856..379369 | TCONS_00004624-exon-sc0000047-1491911889:378856..379369 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1510915933:378856..379369 | TCONS_00004624-exon-sc0000047-1510915933:378856..379369 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1575043694:378856..379369 | TCONS_00004624-exon-sc0000047-1575043694:378856..379369 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1491911889:379802..379903 | TCONS_00004624-exon-sc0000047-1491911889:379802..379903 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1510915933:379802..379903 | TCONS_00004624-exon-sc0000047-1510915933:379802..379903 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1575043694:379802..379903 | TCONS_00004624-exon-sc0000047-1575043694:379802..379903 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1491911889:380525..381125 | TCONS_00004624-exon-sc0000047-1491911889:380525..381125 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1510915933:380525..381125 | TCONS_00004624-exon-sc0000047-1510915933:380525..381125 | Clytia hemisphaerica | exon |
| TCONS_00004624-exon-sc0000047-1575043694:380525..381125 | TCONS_00004624-exon-sc0000047-1575043694:380525..381125 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:378856..381125 + |
Blast
BLAST of TCONS_00004624 vs. Swiss-Prot (Human)
Match: CYTB (Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 4.618e-24 Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 2
Query: 449 MMCGGVGNANPADEEVIGILNQVKGQVEGKTNDSYDVFEAHSYSTQVVAGTNFFIKVKVGDGKYIHVRVFRPLPHTNGSPEVHSVQMDKSEQDAIVHF 742
MMCG PA E I +QV+ Q+E K N + VF+A S+ +QVVAGTN+FIKV VGD ++H+RVF+ LPH N + + Q +K++ D + +F
Sbjct: 1 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
The following BLAST results are available for this feature:
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