TCONS_00004682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004682
Unique NameTCONS_00004682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004682 ID=TCONS_00004682|Name=TCONS_00004682|organism=Clytia hemisphaerica|type=transcript|length=2872bp
gaaaaatccaaaaattaaaTCGATGGAATATGAAAAAATGTCTGCTGCAA
GAAATTTAAAACGTAAAATCTCAGTGGCTACAAATGGCGAGTTCAACGAT
GaatcaacaaaaattaaaaaagctaaaaagagCTCTACACCAtcgtcaaa
aaatgaagaaaattgtaaaaaatgtatCAAGAATCGACTGTCCCTTAAGT
GTGCTGGTCCATACGTATTGGGGCCATCTCTTGGTCGTTCACCAGTTAAA
AGTATTGTTCAATGTTTAGCAAGAAAGATGAGTACTGACAATTTCTTCAC
CATAAAATTACTAACTCTAACCAATTCTAAGGAATCAATGAATGATGTTA
AGCAGGGTAAAATGTTGATACACACTGAGTATTCGTTGTTATCTTTACTT
CATAAGCAAGAAGGTGTTATACACACTCATGGACTGTTTCAAGATGAGGT
TATACCAGAGGATACATCAGATAAAGCCATCACCAGTGAAGAACAAGAAA
CTCGTTTTAAAAAATGCAGACGGTTATGTCTTGTTTTAGATTGCCTTGAG
CCTCACAATTATTGTCAATCTACACAAGATTTTGAGAATTTGCAATCGTA
TGTTATTAAAGAGAAGAAATTGTGTGAGAGGAAAGCTTTGGTTGTTTTCT
TGGATATTATCAAAGTTGTTAAGGGGCTTCATGAGaaaaatattgttCAC
AGAGATCTCAAGCTAGGAaatattgttttaaacaaaCGaacaaGACGGAT
TACTATTACTAATTTTTGTTTGGGCAAACATTTAGTCAGAGGTGATGATT
TGTTGAATGACCAGAGAGGGAGCCCTGCATATATAAGTCCTGACGTCCTT
AGTGgTCGTCCATACTCAGGCAAAGCATCAGACATGTGGGCGCTGGGCGT
TGTTCTATACACCATGCTGTACGGACAATTCCCATTCTACGATAGTGTAC
CACAGGAGTTATTTCGTAAGATCAAGACTGCTGAATACGTTATTCCAAAG
GATAAGAGAGTATCAGAGGACACAATTCTCCTGCTGCATCGATTGTTGAT
GTTGGATTCTTCAAAGAGGGCAACTGCTGATGATGCATTGATACAGCTAC
AAACTACTGTCAGTTCCTGGTATTGCTCAACCGTTCTACACGATGTTCAG
ATTGTGCCTGATATCGATCACCAACAAGATAAAGAAAACGCCACCAACTC
AAATACTACTTCAAACGGTAACCCATCCTCACGGAAAAGCTCTACAGAAT
CCATGGATAGCGTCATCTTGGTACAAACTCCAAAACATCTCAAACAACCT
CACAGACATTCAACTCGATATAGTCACCATAGACATCAACAAGAACTTCT
GAGGCGAATTCAAAGTATGACTTCACCTCCACCCACATTGAGACGTGTTA
GTCGTAGCACTCCTTCACTTACGGAAAGTGATTTAGAAGCATACGCTAGA
GGGATTCGATCAATTGTTCCACTATAAAGACTTTGCTTAATTTCGCAGCA
GAattgtatttttgtgaaatttcaatGACAGATGAGGATGCAGTATAGAA
TTATTTAAAGGTGGTTTCGTTTACATTTTCTGGTCGAAAGCCTCCTGTAG
CTGACTGTTACTGTCGCACAATTCTTTATAGGAACAACTTTCCATGAGGA
CCAGCTTAAGAATAAATCAAATGAAAGGGTCAATTTAAGCTTCTCTTAAG
TCCCTCGAGTGAAGAAAGCATAAGTATATTGTGGCCTAACCTAAAACTAG
AACAACCGATGTACAGGCAAAATTTACTGGTTATCAAACTGGttataaaa
attttctattAGAGTATTTTTTTTGACCGTGCGCTTCcattgaatatatt
ttaaattttgagtctCTGGTTAAACACGATATTTTTTTAGATCAAATATT
GGGCCATTTCATtatatatccatacaggggggttacgaacatttccaggg
ggaggggtaatccgagaagaatttccagggggagttgttttcatttttcc
agggtgTAATaacttattttaaatttttagggGGTTTCAGACTATgattt
agttcgtccacccgcACTCAAAAGGTAGGAAAATCTATTTTCCAAgggtt
tttctgaaaattttcggGGGTAATCAcaaatttcaaagaatttttttttt
gacgtgaAAAAGCTCGTCCGTCCCCTGTATGGATTTTTAATGTAACAACC
CATTTCTCTGccaaaaagtttctaaaagacAAATGATTTGTGATAATTAG
AGATTCCATTGACAGACCTCTATACTTCCTACTCGTTAGAGAATATCAGA
AGCTGTCCATTGTACTTGCTGAGAATAACTACCTATCATGGTCTTTATTC
GCTATTTTTATATTCGatagaaaatatatattataaaaTTTCTCCAAAGC
AATATTATGTTGATCATAatgttatcaaaatatttttaatataacCTATA
CAATTTTTTGAACCTAAAAATActctctttttcctttttttcgtgtgact
tattttttacttgtaaaaatctattatatacatataatttttttgaaatt
taactcGTCTTGTTTTGGGACGatatggagtttttacaagctcttatttg
atttggttggtcgttaaccagtaataaaacaattttgttactttttataa
agaacgcgtcatttttattacttcaaatgaccaattattagagtatctta
taaaaactccatctcatctgcttGTTTTCCTTGTTTATCTTAAACAATCT
TCCcgtaaaaattatatttcctttTTGTCCCGAACAGACTTTGCACTAGT
CCCGGGATAACTTAATCTTTGACTAAACCCTAACTATTTCTTAGCTACGG
TATAGtttgtccatattcattt
Run BLAST on NCBI

transcript from alignment at sc0000047:338047..350279-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004682 ID=TCONS_00004682|Name=TCONS_00004682|organism=Clytia hemisphaerica|type=transcript|length=12233bp|location=Sequence derived from alignment at sc0000047:338047..350279- (Clytia hemisphaerica)
GAAAAATCCAAAAATTAAATCGATGGAGTGAACAGGTTCATTCATTTTGG
CTTTAACAAAACTGTATACTGTTGCTATATCAAAACTCTTAGCCCATTTG
TTCCATTAAATTTGTTCTATCTCACCCTTTGCTAGAAGGTTGGCGGCAGA
CGGATATCATCCACCAGGATTGAAGACGGGGGTTCGGTGTTATTATCAGT
TAGTAGGGTTATAGGGTTGGAGCTGGAGAGTCACAATATGAGGCTGAAGG
CCTTCTTAGGGGCATCCGTCCGTACCCTCAGAAAATCAGGATAGAAGATA
GGAAAGTAGAAAATAGGGGGGAAATAAGAGAGGATGCATCCTACTAGTTA
GCGACTCCAGAAGTCATGCAACTTTCGTTGACGTCAAACCAAATGTTTCA
TTTTTCCGTGAACTTTGAACCCTTCGAACTTTTTTTCTGTGTACGCTAAA
GCGTTCCAGTTTTTACTAAATGAAAGCCCGTGATCTTAGCTTTCCAGCGG
TATAACACTGTGGACACAGGCTAGACAGACGGCAAATTGGTAAAATGCCG
AACCTTTTGCAACATTTTGAAAATTGTTTGCCGACGGGAGAATGTAGTTT
TTTTCACTTTTTTGCTTCTTTAGCATGGGAATGTCCCCAAAAAAAGTTTT
TATTTCTGCCGAAATGGATTTTCTTTTCATTTGGGGTTTCTATGGCGCGC
GGAAGCACCAATAAATACTACCTTGTTTAAAACAAAACTATGTCATTTAA
ACTCTCTGAAACGAGCTACATTCGCAAATCCCGTCATTCTGACCATAAAA
AAGTGGGTCGGTCGGTTGGTCGGGCGAAAAATATTTTCTGTTTGAACGAA
ACAGTCCGAGAGGGAAGAATTTTCCTTAGAAAAGGCTGGTAAACGGACAT
TTGATCGCCTTAAGCCTCTTTTTCACTTCACAAAAGCTCCGCTGGTTTGT
TTTGATGCTTCCATATGGTCCGCAATGAAAAATCGGACTTGTAAATCGGG
AAAAAACGGAATTAACGTGTTTCGAATTGTTTTTTTGGGCGAGATTAGCG
TTTGCTCTTTCTCTCAAAAAAGAAAACATGGAGGGTGATGGTGGAGTTTC
AGCTGTCAAGAAAAATGGTTTCCGACTCTCCGACTCTAATTTTTCAGTAG
AAATCACAGTCGGTCGGGTGACAGTAACCAAACAATTTCACTCGCGGATA
GTGGAATTATTAGCGCCCCAAAAAAATAATTCCAAATTAGGAATAAAAAC
GAACTGCTGTTTTTATTATCACGAAGAAAAACAGAAAGTGAGTTTTATAA
ATAAGATGTCAATTTACCGGGAGAAGTGAAGTTTTTTCTAGGAATTACAG
CTCGGTCCCCCAAGCAAGTCAAGAGCTCAATCTTTCTTTCCCACCTAAAT
GGAATGGTAAAAATCTTATGAAGTACTTTTTAACGTGCAATTTTTTCTGT
TTTTGGAGAAAATCTAGGTATTTGCTTCATATTCCTAATTAGGAATACTA
GTAAAAGTAAGAAAAATATTCCTAATTTGGCTAAAGGTATTGACTGTTGT
TTGCCAACCTTGCTGGAACTGCCTGAGTCAGCGCATACGGGTACCCGGGG
TATGTCCGTTTGTCCGTTCTTCCGTCCGTCCGTTCGTCTTTTACCAGCTT
TTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCA
AAATGGCAATGCCCAGAACGTTACGGAGCCCGATTTTTGAGAAAAAATTT
ATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGAC
TTTGCGCAAAATCCTGTCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAAATATAGCTTTTCTCAATGTTGACTCATTATTTTTTTCTGATT
TTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCTGA
TTTTCAAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTGCCTAAA
AATAGGGTTTTTTGGACTTAGCACAAAATCCTGACATTACTTTTGTCTGA
TTTTTATTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTG
GTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAACGGATTTTCGTATTT
TGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAAAGTT
GACTCATTATTTTTTTCTGATTTCTTGCACAATGATGCAAAATAGCAATG
CCCAAAATGTGGCGGAGCCAGATTTTTAAGGAATATTTTTATGGGCAAAT
TTGGGCCAAAAACAGCTTAAAAAGTTTTTTGGGGCTGAATGGTTTAAGTG
ATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACAC
ACAAGCTTTATTTTTCCATTCTGAATTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCATTCTGAATTTTTGTAC
AATTATTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAG
GTCCATTCAGCATGTTGCTTGTTATTATGGAAACCAAACGAGTGAGAACA
AGTCATAAAACTAAAAGTCAGTTAGGAACATTTGGCGAGTTCCTGTACGC
AGCCGCAATAAAAAAATCATAACAACACTCATTAAAAATGGCGTTCGTGT
CTTTTCTCACTTTTTTTAACCTAGATGATGTAGCAAACAAAGTAAGTATA
AGCACACTGTGCTTTTAATTGGCTTTTAATTGGCTTTAATTGGCCCTTCC
AAATTTCCATTGGGACTTAATTTTGCGGATGACACCCGAATCAGCGAAAT
CCACAAAATTTAATCCTGGGAAAGTTTATCCCATTAAAGTAGTTTGAGTC
AATGGGAACGGCAAATTATAAAATACATGAGTTTGCTTTTGCAAAGAGTA
GGCTTTTAAATCGAAATATGAAAGAGATCCATATGTGGAACACGCACAAG
TGTCTGCACACTCTGAGAGGAAGAAGAACAAATCAGTGACAAATATACAA
TGGAGAATTTCTCAGTGCTACGACATCAGACGGCATTGTTCCCTCTTATT
TTGGATGGGTGCATCTTTTCAGTTGAACACCCTATCTGATTTTGGAGGTC
AAATTATTTTCAGGTCAAAACTTTCTTTTGTTTCATCTGAAATGTGAACA
CAGTAAACAAAGGGATTATCAATTTATAGTCATTTTGTAGTTTTCCATCC
TTTTATGTATATTCGTAAAGGTTTTACTATTGTATCAAAAAATCTGCTAT
TCTGCAGTAACATTATTCAAAATTCCAACTGCAGTTCTGATTTTTTATCC
AAAAAATTATACTGTTTTTATTCCTGAAAAAGAGCATCAAACTATTTGTT
CTTCCTCTTTCTTTTAAAGCCATTTGATCTCCTTTCAAAGTAGGATTTTC
TCCCTTTTATATTGATTTTTAAGATGGTTATTGTTTATCACCTGGCTTTC
TCTTCATGCTATATTGTATATATTATCATTTTAATTAAATTTGAAACGTT
AACTTCTATAATGTATTAGACTACCCACCCAGTCTCCCTATTTCTTTTTT
CATGGCTTATGATTGTATTTTTCTCTTTACTTTCATTAATCTTTATTTCT
TATTTTGTCAGAACACGATGTTTGAAATACTATTTTACCAACCCACTTTC
AAAGGATGTCTGCTTCAACTCTCAACCTTGATTTTGATATGGGTTTTCAA
ACAAACTAAATACACTTTATCACTTTAGCTGTGTGGTCAGTTTTTGAATG
GGCTGGTAATTAATTTACAAGGAAATGACGCCTAATTCTTTGTCTTTTAC
GATGTCAATGCAAGGACTTCAGACATTTTGAGATCTTCCTTTCTGGTAGA
CTTGAGCCCAGTCTCCTCACTTTTTGTAGATTGAAGTGTATTATGATAGA
CATTGCAAAGACATTTGGTTTGATGAGTATGGAAAAAAGGTGTAATACTT
AAATTCAATATAATATTCTAGCATTAAAAAAAAGAGGAAATGAGACACTT
TAAAATAGATTTAGGATGGCATTAAGTTGATCATCAAATCTAATATCAAT
TCTGCTTTAAATTCACACACAAAATATTTCGATCAGATTTTTTCACTTCG
TGAATTGTTTTAAATGTTCTCAAAATTTTATTTACTGTTTACCATTTGTT
TGTGTAACAAACTTTTGTAAACAATCTCTTTAAAACGTCTACTGTTGAGT
ATAACTAATTATTTTGTTTTTAAAAACCTCTTTCTTTTTTATTTAGCAAG
ATATGAAAAAATGTCTGCTGCAAGAAATTTAAAACGTAAAATCTCAGTGG
CTACAAATGGCGAGTTCAACGATGAATCAACAAAAATTAAAAAAGCTAAA
AAGAGCTCTACACCATCGTCAAAAAATGAAGAAAATTGTAAAAAATGTAT
CAAGAATCGACTGTCCCTTAAGTGTGCTGGTCCATACGTATTGGGGCCAT
CTCTTGGTCGTTCACCAGTTAAAAGTATTGTTCAATGTTTAGCAAGAAAG
ATGAGTACTGACAATTTCTTCACCATAAAATTACTAACTCTAACCAATTC
TAAGGAATCAATGAATGATGTTAAGCAGGGTAAAATGTTGATACACACTG
AGTATTCGTTGTTATCTTTACTTCATAAGCAAGAAGGTGTTATACACACT
CATGGACTGTTTCAAGATGAGGTTATACCAGAGGATACATCAGATAAAGC
CATCACCAGTGAAGAACAAGAAACTCGTTTTAAAAAATGCAGACGGTTAT
GTCTTGTTTTAGATTGCCTTGAGCCTCACAATTATTGTCAATCTACACAA
GATTTTGAGAATTTGCAATCGTATGTTATTAAAGAGAAGAAATTGTGTGA
GAGGAAAGCTTTGGTTGTTTTCTTGGATATTATCAAAGTTGTTAAGGGGC
TTCATGAGGTAAGATTTAGATTTTGATATATTTACATTACAAGAGTCTTC
TACATATTCATTTAATAAGACTATGTATAATATATTTTTTAAATTTATTT
GTTTAGTTTACTTTAATTGGATTAATCTGCTTGAGGTTTCAATTTTGCAA
GCCTTAGAAAATTGCGAAATTTTGTGGATTTATTTTTGTAAACAAACATA
CAAACCAACGTTTTCAAATATCTCTTGTGGATTTAATTTCAGAGATCAGC
TAAAAATCAGTTGAAAATTGTCCTGAGAACGCCAATTTTGACAAAATTAG
CAGATACACAGATTTTTTAAGCCGAAAATCTGACCTTAAAATGTTGCATT
TATTTAATTTCGTGAGTTTTATTTTTGCAAAACAGTAAAAAGATTCACAA
AAATTCTAAAATTAGATCTCACGAAAATTAATTGATCCAAAAATGAAAGT
AATACGAATTTTTTCGTTTTGAATCGTTCGATTGTCAGCTTAATTCATTT
AAATCTTTAGCTATGGAAAATCTTTTAATTTTGGCTTTTTCTATCATTTT
TTCCTTTTTTTTGTTTTAGAAAAATATTGTTCACAGAGATCTCAAGCTAG
GAAATATTGTTTTAAACAAACGGTAAGCTTTCCATGTAACTTTTTAAGTC
ATGTATCTACTTCCCTATTGGTAGAGATTGAATGAATAATATACTGTAGC
CAGTTTCGAAAAAGGGTGTTGTTTACTCTCGTGTACCTAATAGCCGGGGG
GGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAA
GCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGA
ATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGG
TGGAATAAGCGGGGGGGGTGGAATAAGCAGGGGGGTTGGAAAAAATCTGA
ATCAAAAATCAGAATTAATACAAAAAAGGGAACTTTCAAAAACATTTTCC
CAAAAATTAATAAGCGGGGGGGTTGGAATAAGAATGTCCTGGGTGGCTAT
TAGGTACCCGAGAGTAGGTCATTTTTTTTTCGATTTCTAAAGCTAATAGT
CTTGATTAATTTTAGGGAATCAATTATGTCCACTTAAAATCCTCTATATC
GTTTTGAAAGCTTCTAAATGATGTATTTCAGGTCTGAAGTGGTTTTTGTG
TCAGTCTTTGTCAATGAAAATCTGAGACCTTATTCACTCACCCCAATATT
AATTCTATATGAGCCGATTCCTATACACGTGTACGCCCGAAAAAAACAAA
CTAAGAAAGTTCATTTTCGTTCATCATCGATCGTTCACCTCTATTCTTTT
TTAGAACAAGACGGATTACTATTACTAATTTTTGTTTGGGCAAACATTTA
GTCAGAGGTGATGATTTGTTGAATGACCAGAGAGGGAGCCCTGCATATAT
AAGTCCTGACGTCCTTAGTGGTGAGTTCTTTTAATTATTTTTGGGCGGAT
TGTCAAAGTTTTGAACGTTTCTTGGAACTTAACTCTTTCTTTCATCCTTT
TTAACAAAAATCATAAAAGCTATAAGGGCCATTCCGAGAAAGTGTCAACC
ACGCTGGGAGAATTTATGCCTGATTGAACCACTTCTATGGGTGCTATGAA
ATGTTGCAATGGTCACGGTGTTCCTAGGTCTCTGCTGGCGGTATCCAGTC
AAAGATAAGCGTGACGTAACGTACCCCTTACTCTGGAATGGCCGCTAACT
CGATGCTATATTTCGATTGTATTTTGAATAATTTATCCAAAAATGTCACT
TTACTATTCTACTAGTGAACAAAAAATGAGGTAGGGGGTGAAGCATCAAT
AAGGGTTATGTATACAATTACTTTATATTTTTATGAATTTTTAGGTCGTC
CATACTCAGGCAAAGCATCAGACATGTGGGCGCTGGGCGTTGTTCTATAC
ACCATGCTGTACGGACAATTCCCATTCTACGATAGTGTACCACAGGAGTT
ATTTCGTAAGATCAAGACTGCTGAATACGTTATTCCAAAGTATGTTTCTT
TTATGTGCGTATAAATGCCGTTGTGATTTTTAAGATGTAGCACTTTGAAG
TCTTTAAAGAGTATCATTTTATCTCCCTTCATTTTTACACAACATTTTAG
ACAAATTTTTTTCCTTTTCGCGCCACGTGGTTACAAATTAAAGAAATTGT
TGTTTATTTTGCTACGTCAGCATATGGTACACTTTCAAAAGAAAATTGTT
AAGCTTAAATTGTCGAATACCCTTACAATGAACCATCTCTTTAATTTGCC
CTTACAGTGCAATTACTTTCGGAAGCTGAAAAACATATTCTGCTTATCCT
ACGGATGTGAAGCATTTTGGGTTCAAAACTCTTTATGATACGGCGGAGTC
TCCCTAACTCGAACACGAACAGAGAACACAAATCTGTTCGAATTATGGAA
ATTTCGAGTTATAAAGATTGTTAACTTAAGGTTACAAAAAGATTTGACTG
AATTTTTGGACCTACCCCGGTGGGGTGAAGGTCCTATAAATTAACCCGTG
TTCGTTAGTTCGTTCGTTCGTTAGTTACCAACTTTTCTCGAGATTGGCTC
ATTCAATTTTTCTGATTTTTTGCACAAAGGTGCATTACTATAAACCCTCG
AATGTGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGGCCGCT
AGAACCGGAAATGTCCCGAAAAAAGCGGTTTTTTGAGATTTTCTCGAGAT
TTTCTCATTAGTTTTTTGCGATTTTTTGCACATAGATGCACATAAGTACT
GCCGAAAAGGTGTTTCTTAATTGCTTTTTCCGTTCCAATAGATATATAAT
TCGAAATTTAAAATTATACATTACTTCCATTAAATTCTAATTATTCGTTT
TATAAATAGGTAGGTCCATTAAAGTATTGCTTGTTATTTCTTACTTAACT
ATCATTGCTGTCGTTTCCATTCTACCAGGGATAAGAGAGTATCAGAGGAC
ACAATTCTCCTGCTGCATCGATTGTTGATGTTGGATTCTTCAAAGAGGGC
AACTGCTGATGATGCATTGATACAGCTACAAACTACTGTCAGTTCCTGGT
AAGATCTCCCAACATCACTTCCTTCTACCTCTCCCTACCCACTCGAAAAA
TACGAATATATTGTCTCCAGGCTTCAGAAAGATTCCGTAAAACTTCATCC
CCGTAAGAAAAAGACACTGACGTCTGATGGATTTTCATCCTGAAATAAAG
TTTTGACAACAAAAATTATTTTGTAAAACAGGTGCCAAAAAGTTTGACAA
AAAAAATATTTTGTAAAATAGGTGCCAGTTTAGAGAAAGAATCAACACTA
TTTTTTTTATTCTGTTACTGACTTTTTCATTACAAGATTGGAGTCTATTT
TACGTTTCATTGAGATTTTTAAAGCTGGTTGCAACACTGGAGGACGTTGA
TATTTTTTTCACGTATTAACAAATATTTGTTTGTGCAAAGTTATTTTTAC
ATTGGATTCTAAGTACTTCATTATTCTATCTCAAAATTTAAGTTAGCCTT
CCCTTAACATTTTTAGTTTGCTCACAGTCTGAATTCGATCTTGTACACTT
TTTTTTCAAACACCTGGTATCTCTCTTCAGGTATTGCTCAACCGTTCTAC
ACGATGTTCAGATTGTGCCTGATATCGATCACCAACAAGATAAAGAAAAC
GCCACCAACTCAAATACTACTTCAAACGGTAACCCATCCTCACGGAAAAG
CTCTACAGAATCCATGGATAGCGTCATCTTGGTACAAACTCCAAAACATC
TCAAACAACCTCACAGACATTCAACTCGATATAGTCACCATAGACATCAA
CAAGAACTTCTGAGGCGAATTCAAAGTATGACTTCACCTCCACCCACATT
GAGACGTGTTAGTCGTAGCACTCCTTCACTTACGGAAAGTGATTTAGAAG
CATACGCTAGAGGGATTCGATCAATTGTTCCACTATAAAGACTTTGCTTA
ATTTCGCAGCAGAATTGTATTTTTGTGAAATTTCAATGACAGATGAGGAT
GCAGTATAGAATTATTTAAAGGTGGTTTCGTTTACATTTTCTGGTCGAAA
GCCTCCTGTAGCTGACTGTTACTGTCGCACAATTCTTTATAGGAACAACT
TTCCATGAGGACCAGCTTAAGAATAAATCAAATGAAAGGGTCAATTTAAG
CTTCTCTTAAGTCCCTCGAGTGAAGAAAGCATAAGTATATTGTGGCCTAA
CCTAAAACTAGAACAACCGATGTACAGGCAAAATTTACTGGTTATCAAAC
TGGTTATAAAAATTTTCTATTAGAGTATTTTTTTTGACCGTGCGCTTCCA
TTGAATATATTTTAAATTTTGAGTCTCTGGTTAAACACGATATTTTTTTA
GATCAAATATTGGGCCATTTCATTATATATCCATACAGGGGGGTTACGAA
CATTTCCAGGGGGAGGGGTAATCCGAGAAGAATTTCCAGGGGGAGTTGTT
TTCATTTTTCCAGGGTGTAATAACTTATTTTAAATTTTTAGGGGGTTTCA
GACTATGATTTAGTTCGTCCACCCGCACTCAAAAGGTAGGAAAATCTATT
TTCCAAGGGTTTTTCTGAAAATTTTCGGGGGTAATCACAAATTTCAAAGA
ATTTTTTTTTTGACGTGAAAAAGCTCGTCCGTCCCCTGTATGGATTTTTA
ATGTAACAACCCATTTCTCTGCCAAAAAGTTTCTAAAAGACAAATGATTT
GTGATAATTAGAGATTCCATTGACAGACCTCTATACTTCCTACTCGTTAG
AGAATATCAGAAGCTGTCCATTGTACTTGCTGAGAATAACTACCTATCAT
GGTCTTTATTCGCTATTTTTATATTCGATAGAAAATATATATTATAAAAT
TTCTCCAAAGCAATATTATGTTGATCATAATGTTATCAAAATATTTTTAA
TATAACCTATACAATTTTTTGAACCTAAAAATACTCTCTTTTTCCTTTTT
TTCGTGTGACTTATTTTTTACTTGTAAAAATCTATTATATACATATAATT
TTTTTGAAATTTAACTCGTCTTGTTTTGGGACGATATGGAGTTTTTACAA
GCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATTTTGTT
ACTTTTTATAAAGAACGCGTCATTTTTATTACTTCAAATGACCAATTATT
AGAGTATCTTATAAAAACTCCATCTCATCTGCTTGTTTTCCTTGTTTATC
TTAAACAATCTTCCCGTAAAAATTATATTTCCTTTTTGTCCCGAACAGAC
TTTGCACTAGTCCCGGGATAACTTAATCTTTGACTAAACCCTAACTATTT
CTTAGCTACGGTATAGTTTGTCCATATTCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002639XLOC_002639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004682-exon-sc0000047-1575043694:350253..350279TCONS_00004682-exon-sc0000047-1575043694:350253..350279Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1575043694:345072..345729TCONS_00004682-exon-sc0000047-1575043694:345072..345729Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1575043694:344458..344510TCONS_00004682-exon-sc0000047-1575043694:344458..344510Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1575043694:343610..343725TCONS_00004682-exon-sc0000047-1575043694:343610..343725Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1575043694:343041..343185TCONS_00004682-exon-sc0000047-1575043694:343041..343185Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1575043694:340332..340451TCONS_00004682-exon-sc0000047-1575043694:340332..340451Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1575043694:338047..339799TCONS_00004682-exon-sc0000047-1575043694:338047..339799Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:350253..350279TCONS_00004682-exon-sc0000047-1510915933:350253..350279Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:345072..345729TCONS_00004682-exon-sc0000047-1510915933:345072..345729Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:344458..344510TCONS_00004682-exon-sc0000047-1510915933:344458..344510Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:343610..343725TCONS_00004682-exon-sc0000047-1510915933:343610..343725Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:343041..343185TCONS_00004682-exon-sc0000047-1510915933:343041..343185Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:340332..340451TCONS_00004682-exon-sc0000047-1510915933:340332..340451Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1510915933:338047..339799TCONS_00004682-exon-sc0000047-1510915933:338047..339799Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:350253..350279TCONS_00004682-exon-sc0000047-1491911889:350253..350279Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:345072..345729TCONS_00004682-exon-sc0000047-1491911889:345072..345729Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:344458..344510TCONS_00004682-exon-sc0000047-1491911889:344458..344510Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:343610..343725TCONS_00004682-exon-sc0000047-1491911889:343610..343725Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:343041..343185TCONS_00004682-exon-sc0000047-1491911889:343041..343185Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:340332..340451TCONS_00004682-exon-sc0000047-1491911889:340332..340451Clytia hemisphaericaexon
TCONS_00004682-exon-sc0000047-1491911889:338047..339799TCONS_00004682-exon-sc0000047-1491911889:338047..339799Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:338047..350279 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.41732	2.32558	0.335406	0.707627	13.3342	13.9108	6.89303	10.06	7.48446	8.73515	11.1672	11.3451	10.4936	11.8727	7.88257	10.515	9.5169	10.5003	9.44815	7.74884	5.25642	2.33874	5.82324	5.51419	9.46607	4.58075	5.67386	7.30146	4.73847	9.22962
Blast
[Close]
BLAST of TCONS_00004682 vs. Swiss-Prot (Human)
Match: STK40 (Serine/threonine-protein kinase 40 OS=Homo sapiens GN=STK40 PE=1 SV=2)

HSP 1 Score: 409.838 bits (1052), Expect = 1.578e-132
Identity = 207/332 (62.35%), Postives = 249/332 (75.00%), Query Frame = 2 
Query:  197 KCAGPYVLGPSLGRSPVKSIVQCLARKMSTDNFFTIKLLTLTNSKE---SMNDVKQGKMLIHTEYSLLSLLHKQEGVIHTHGLFQDEV--IPEDTSDKAITSEEQETRFKKCRRLCLVLDCLEPHNYCQSTQDFENLQSYVIKEKKLCERKALVVFLDIIKVVKGLHEKNIVHRDLKLGNIVLNKRTRRITITNFCLGKHLVRGDDLLNDQRGSPAYISPDVLSGRPYSGKASDMWALGVVLYTMLYGQFPFYDSVPQELFRKIKTAEYVIPKDKRVSEDTIXXXXXXXXXDSSKRATADDALIQLQTTVSSWYC-STVLHDVQIVPDIDHQ 1174
            K AGP++LGP LG SPV SIVQCLARK  TD+F+ +K+LTL    +      + +QGKML+HTEYSLLSLLH Q+GV+H HGLFQD    I EDT    +         K  +R+CLVLDCL  H++   T D  NLQ YVIKEK+L ER+ +V+F D+++VV+ LH+KNIVHRDLKLGN+VLNKRT RITITNFCLGKHLV   DLL DQRGSPAYISPDVLSGRPY GK SDMWALGVVL+TMLYGQFPFYDS+PQELFRKIK AEY IP+D RVSE+T+ L+ +LL+LD  +R  A D L  L   ++SW   S++   +Q+VPDID Q
Sbjct:   30 KRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVK-------KMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQ 354
The following BLAST results are available for this feature:
BLAST of TCONS_00004682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STK401.578e-13262.35Serine/threonine-protein kinase 40 OS=Homo sapiens... [more]
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