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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004682 ID=TCONS_00004682|Name=TCONS_00004682|organism=Clytia hemisphaerica|type=transcript|length=2872bp
gaaaaatccaaaaattaaaTCGATGGAATATGAAAAAATGTCTGCTGCAA
GAAATTTAAAACGTAAAATCTCAGTGGCTACAAATGGCGAGTTCAACGAT
GaatcaacaaaaattaaaaaagctaaaaagagCTCTACACCAtcgtcaaa
aaatgaagaaaattgtaaaaaatgtatCAAGAATCGACTGTCCCTTAAGT
GTGCTGGTCCATACGTATTGGGGCCATCTCTTGGTCGTTCACCAGTTAAA
AGTATTGTTCAATGTTTAGCAAGAAAGATGAGTACTGACAATTTCTTCAC
CATAAAATTACTAACTCTAACCAATTCTAAGGAATCAATGAATGATGTTA
AGCAGGGTAAAATGTTGATACACACTGAGTATTCGTTGTTATCTTTACTT
CATAAGCAAGAAGGTGTTATACACACTCATGGACTGTTTCAAGATGAGGT
TATACCAGAGGATACATCAGATAAAGCCATCACCAGTGAAGAACAAGAAA
CTCGTTTTAAAAAATGCAGACGGTTATGTCTTGTTTTAGATTGCCTTGAG
CCTCACAATTATTGTCAATCTACACAAGATTTTGAGAATTTGCAATCGTA
TGTTATTAAAGAGAAGAAATTGTGTGAGAGGAAAGCTTTGGTTGTTTTCT
TGGATATTATCAAAGTTGTTAAGGGGCTTCATGAGaaaaatattgttCAC
AGAGATCTCAAGCTAGGAaatattgttttaaacaaaCGaacaaGACGGAT
TACTATTACTAATTTTTGTTTGGGCAAACATTTAGTCAGAGGTGATGATT
TGTTGAATGACCAGAGAGGGAGCCCTGCATATATAAGTCCTGACGTCCTT
AGTGgTCGTCCATACTCAGGCAAAGCATCAGACATGTGGGCGCTGGGCGT
TGTTCTATACACCATGCTGTACGGACAATTCCCATTCTACGATAGTGTAC
CACAGGAGTTATTTCGTAAGATCAAGACTGCTGAATACGTTATTCCAAAG
GATAAGAGAGTATCAGAGGACACAATTCTCCTGCTGCATCGATTGTTGAT
GTTGGATTCTTCAAAGAGGGCAACTGCTGATGATGCATTGATACAGCTAC
AAACTACTGTCAGTTCCTGGTATTGCTCAACCGTTCTACACGATGTTCAG
ATTGTGCCTGATATCGATCACCAACAAGATAAAGAAAACGCCACCAACTC
AAATACTACTTCAAACGGTAACCCATCCTCACGGAAAAGCTCTACAGAAT
CCATGGATAGCGTCATCTTGGTACAAACTCCAAAACATCTCAAACAACCT
CACAGACATTCAACTCGATATAGTCACCATAGACATCAACAAGAACTTCT
GAGGCGAATTCAAAGTATGACTTCACCTCCACCCACATTGAGACGTGTTA
GTCGTAGCACTCCTTCACTTACGGAAAGTGATTTAGAAGCATACGCTAGA
GGGATTCGATCAATTGTTCCACTATAAAGACTTTGCTTAATTTCGCAGCA
GAattgtatttttgtgaaatttcaatGACAGATGAGGATGCAGTATAGAA
TTATTTAAAGGTGGTTTCGTTTACATTTTCTGGTCGAAAGCCTCCTGTAG
CTGACTGTTACTGTCGCACAATTCTTTATAGGAACAACTTTCCATGAGGA
CCAGCTTAAGAATAAATCAAATGAAAGGGTCAATTTAAGCTTCTCTTAAG
TCCCTCGAGTGAAGAAAGCATAAGTATATTGTGGCCTAACCTAAAACTAG
AACAACCGATGTACAGGCAAAATTTACTGGTTATCAAACTGGttataaaa
attttctattAGAGTATTTTTTTTGACCGTGCGCTTCcattgaatatatt
ttaaattttgagtctCTGGTTAAACACGATATTTTTTTAGATCAAATATT
GGGCCATTTCATtatatatccatacaggggggttacgaacatttccaggg
ggaggggtaatccgagaagaatttccagggggagttgttttcatttttcc
agggtgTAATaacttattttaaatttttagggGGTTTCAGACTATgattt
agttcgtccacccgcACTCAAAAGGTAGGAAAATCTATTTTCCAAgggtt
tttctgaaaattttcggGGGTAATCAcaaatttcaaagaatttttttttt
gacgtgaAAAAGCTCGTCCGTCCCCTGTATGGATTTTTAATGTAACAACC
CATTTCTCTGccaaaaagtttctaaaagacAAATGATTTGTGATAATTAG
AGATTCCATTGACAGACCTCTATACTTCCTACTCGTTAGAGAATATCAGA
AGCTGTCCATTGTACTTGCTGAGAATAACTACCTATCATGGTCTTTATTC
GCTATTTTTATATTCGatagaaaatatatattataaaaTTTCTCCAAAGC
AATATTATGTTGATCATAatgttatcaaaatatttttaatataacCTATA
CAATTTTTTGAACCTAAAAATActctctttttcctttttttcgtgtgact
tattttttacttgtaaaaatctattatatacatataatttttttgaaatt
taactcGTCTTGTTTTGGGACGatatggagtttttacaagctcttatttg
atttggttggtcgttaaccagtaataaaacaattttgttactttttataa
agaacgcgtcatttttattacttcaaatgaccaattattagagtatctta
taaaaactccatctcatctgcttGTTTTCCTTGTTTATCTTAAACAATCT
TCCcgtaaaaattatatttcctttTTGTCCCGAACAGACTTTGCACTAGT
CCCGGGATAACTTAATCTTTGACTAAACCCTAACTATTTCTTAGCTACGG
TATAGtttgtccatattcattt Run BLAST on NCBI transcript from alignment at sc0000047:338047..350279- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004682 ID=TCONS_00004682|Name=TCONS_00004682|organism=Clytia hemisphaerica|type=transcript|length=12233bp|location=Sequence derived from alignment at sc0000047:338047..350279- (Clytia hemisphaerica)
GAAAAATCCAAAAATTAAATCGATGGAGTGAACAGGTTCATTCATTTTGG
CTTTAACAAAACTGTATACTGTTGCTATATCAAAACTCTTAGCCCATTTG
TTCCATTAAATTTGTTCTATCTCACCCTTTGCTAGAAGGTTGGCGGCAGA
CGGATATCATCCACCAGGATTGAAGACGGGGGTTCGGTGTTATTATCAGT
TAGTAGGGTTATAGGGTTGGAGCTGGAGAGTCACAATATGAGGCTGAAGG
CCTTCTTAGGGGCATCCGTCCGTACCCTCAGAAAATCAGGATAGAAGATA
GGAAAGTAGAAAATAGGGGGGAAATAAGAGAGGATGCATCCTACTAGTTA
GCGACTCCAGAAGTCATGCAACTTTCGTTGACGTCAAACCAAATGTTTCA
TTTTTCCGTGAACTTTGAACCCTTCGAACTTTTTTTCTGTGTACGCTAAA
GCGTTCCAGTTTTTACTAAATGAAAGCCCGTGATCTTAGCTTTCCAGCGG
TATAACACTGTGGACACAGGCTAGACAGACGGCAAATTGGTAAAATGCCG
AACCTTTTGCAACATTTTGAAAATTGTTTGCCGACGGGAGAATGTAGTTT
TTTTCACTTTTTTGCTTCTTTAGCATGGGAATGTCCCCAAAAAAAGTTTT
TATTTCTGCCGAAATGGATTTTCTTTTCATTTGGGGTTTCTATGGCGCGC
GGAAGCACCAATAAATACTACCTTGTTTAAAACAAAACTATGTCATTTAA
ACTCTCTGAAACGAGCTACATTCGCAAATCCCGTCATTCTGACCATAAAA
AAGTGGGTCGGTCGGTTGGTCGGGCGAAAAATATTTTCTGTTTGAACGAA
ACAGTCCGAGAGGGAAGAATTTTCCTTAGAAAAGGCTGGTAAACGGACAT
TTGATCGCCTTAAGCCTCTTTTTCACTTCACAAAAGCTCCGCTGGTTTGT
TTTGATGCTTCCATATGGTCCGCAATGAAAAATCGGACTTGTAAATCGGG
AAAAAACGGAATTAACGTGTTTCGAATTGTTTTTTTGGGCGAGATTAGCG
TTTGCTCTTTCTCTCAAAAAAGAAAACATGGAGGGTGATGGTGGAGTTTC
AGCTGTCAAGAAAAATGGTTTCCGACTCTCCGACTCTAATTTTTCAGTAG
AAATCACAGTCGGTCGGGTGACAGTAACCAAACAATTTCACTCGCGGATA
GTGGAATTATTAGCGCCCCAAAAAAATAATTCCAAATTAGGAATAAAAAC
GAACTGCTGTTTTTATTATCACGAAGAAAAACAGAAAGTGAGTTTTATAA
ATAAGATGTCAATTTACCGGGAGAAGTGAAGTTTTTTCTAGGAATTACAG
CTCGGTCCCCCAAGCAAGTCAAGAGCTCAATCTTTCTTTCCCACCTAAAT
GGAATGGTAAAAATCTTATGAAGTACTTTTTAACGTGCAATTTTTTCTGT
TTTTGGAGAAAATCTAGGTATTTGCTTCATATTCCTAATTAGGAATACTA
GTAAAAGTAAGAAAAATATTCCTAATTTGGCTAAAGGTATTGACTGTTGT
TTGCCAACCTTGCTGGAACTGCCTGAGTCAGCGCATACGGGTACCCGGGG
TATGTCCGTTTGTCCGTTCTTCCGTCCGTCCGTTCGTCTTTTACCAGCTT
TTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCA
AAATGGCAATGCCCAGAACGTTACGGAGCCCGATTTTTGAGAAAAAATTT
ATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGAC
TTTGCGCAAAATCCTGTCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAAATATAGCTTTTCTCAATGTTGACTCATTATTTTTTTCTGATT
TTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCTGA
TTTTCAAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTGCCTAAA
AATAGGGTTTTTTGGACTTAGCACAAAATCCTGACATTACTTTTGTCTGA
TTTTTATTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTG
GTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAACGGATTTTCGTATTT
TGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAAAGTT
GACTCATTATTTTTTTCTGATTTCTTGCACAATGATGCAAAATAGCAATG
CCCAAAATGTGGCGGAGCCAGATTTTTAAGGAATATTTTTATGGGCAAAT
TTGGGCCAAAAACAGCTTAAAAAGTTTTTTGGGGCTGAATGGTTTAAGTG
ATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACAC
ACAAGCTTTATTTTTCCATTCTGAATTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCATTCTGAATTTTTGTAC
AATTATTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAG
GTCCATTCAGCATGTTGCTTGTTATTATGGAAACCAAACGAGTGAGAACA
AGTCATAAAACTAAAAGTCAGTTAGGAACATTTGGCGAGTTCCTGTACGC
AGCCGCAATAAAAAAATCATAACAACACTCATTAAAAATGGCGTTCGTGT
CTTTTCTCACTTTTTTTAACCTAGATGATGTAGCAAACAAAGTAAGTATA
AGCACACTGTGCTTTTAATTGGCTTTTAATTGGCTTTAATTGGCCCTTCC
AAATTTCCATTGGGACTTAATTTTGCGGATGACACCCGAATCAGCGAAAT
CCACAAAATTTAATCCTGGGAAAGTTTATCCCATTAAAGTAGTTTGAGTC
AATGGGAACGGCAAATTATAAAATACATGAGTTTGCTTTTGCAAAGAGTA
GGCTTTTAAATCGAAATATGAAAGAGATCCATATGTGGAACACGCACAAG
TGTCTGCACACTCTGAGAGGAAGAAGAACAAATCAGTGACAAATATACAA
TGGAGAATTTCTCAGTGCTACGACATCAGACGGCATTGTTCCCTCTTATT
TTGGATGGGTGCATCTTTTCAGTTGAACACCCTATCTGATTTTGGAGGTC
AAATTATTTTCAGGTCAAAACTTTCTTTTGTTTCATCTGAAATGTGAACA
CAGTAAACAAAGGGATTATCAATTTATAGTCATTTTGTAGTTTTCCATCC
TTTTATGTATATTCGTAAAGGTTTTACTATTGTATCAAAAAATCTGCTAT
TCTGCAGTAACATTATTCAAAATTCCAACTGCAGTTCTGATTTTTTATCC
AAAAAATTATACTGTTTTTATTCCTGAAAAAGAGCATCAAACTATTTGTT
CTTCCTCTTTCTTTTAAAGCCATTTGATCTCCTTTCAAAGTAGGATTTTC
TCCCTTTTATATTGATTTTTAAGATGGTTATTGTTTATCACCTGGCTTTC
TCTTCATGCTATATTGTATATATTATCATTTTAATTAAATTTGAAACGTT
AACTTCTATAATGTATTAGACTACCCACCCAGTCTCCCTATTTCTTTTTT
CATGGCTTATGATTGTATTTTTCTCTTTACTTTCATTAATCTTTATTTCT
TATTTTGTCAGAACACGATGTTTGAAATACTATTTTACCAACCCACTTTC
AAAGGATGTCTGCTTCAACTCTCAACCTTGATTTTGATATGGGTTTTCAA
ACAAACTAAATACACTTTATCACTTTAGCTGTGTGGTCAGTTTTTGAATG
GGCTGGTAATTAATTTACAAGGAAATGACGCCTAATTCTTTGTCTTTTAC
GATGTCAATGCAAGGACTTCAGACATTTTGAGATCTTCCTTTCTGGTAGA
CTTGAGCCCAGTCTCCTCACTTTTTGTAGATTGAAGTGTATTATGATAGA
CATTGCAAAGACATTTGGTTTGATGAGTATGGAAAAAAGGTGTAATACTT
AAATTCAATATAATATTCTAGCATTAAAAAAAAGAGGAAATGAGACACTT
TAAAATAGATTTAGGATGGCATTAAGTTGATCATCAAATCTAATATCAAT
TCTGCTTTAAATTCACACACAAAATATTTCGATCAGATTTTTTCACTTCG
TGAATTGTTTTAAATGTTCTCAAAATTTTATTTACTGTTTACCATTTGTT
TGTGTAACAAACTTTTGTAAACAATCTCTTTAAAACGTCTACTGTTGAGT
ATAACTAATTATTTTGTTTTTAAAAACCTCTTTCTTTTTTATTTAGCAAG
ATATGAAAAAATGTCTGCTGCAAGAAATTTAAAACGTAAAATCTCAGTGG
CTACAAATGGCGAGTTCAACGATGAATCAACAAAAATTAAAAAAGCTAAA
AAGAGCTCTACACCATCGTCAAAAAATGAAGAAAATTGTAAAAAATGTAT
CAAGAATCGACTGTCCCTTAAGTGTGCTGGTCCATACGTATTGGGGCCAT
CTCTTGGTCGTTCACCAGTTAAAAGTATTGTTCAATGTTTAGCAAGAAAG
ATGAGTACTGACAATTTCTTCACCATAAAATTACTAACTCTAACCAATTC
TAAGGAATCAATGAATGATGTTAAGCAGGGTAAAATGTTGATACACACTG
AGTATTCGTTGTTATCTTTACTTCATAAGCAAGAAGGTGTTATACACACT
CATGGACTGTTTCAAGATGAGGTTATACCAGAGGATACATCAGATAAAGC
CATCACCAGTGAAGAACAAGAAACTCGTTTTAAAAAATGCAGACGGTTAT
GTCTTGTTTTAGATTGCCTTGAGCCTCACAATTATTGTCAATCTACACAA
GATTTTGAGAATTTGCAATCGTATGTTATTAAAGAGAAGAAATTGTGTGA
GAGGAAAGCTTTGGTTGTTTTCTTGGATATTATCAAAGTTGTTAAGGGGC
TTCATGAGGTAAGATTTAGATTTTGATATATTTACATTACAAGAGTCTTC
TACATATTCATTTAATAAGACTATGTATAATATATTTTTTAAATTTATTT
GTTTAGTTTACTTTAATTGGATTAATCTGCTTGAGGTTTCAATTTTGCAA
GCCTTAGAAAATTGCGAAATTTTGTGGATTTATTTTTGTAAACAAACATA
CAAACCAACGTTTTCAAATATCTCTTGTGGATTTAATTTCAGAGATCAGC
TAAAAATCAGTTGAAAATTGTCCTGAGAACGCCAATTTTGACAAAATTAG
CAGATACACAGATTTTTTAAGCCGAAAATCTGACCTTAAAATGTTGCATT
TATTTAATTTCGTGAGTTTTATTTTTGCAAAACAGTAAAAAGATTCACAA
AAATTCTAAAATTAGATCTCACGAAAATTAATTGATCCAAAAATGAAAGT
AATACGAATTTTTTCGTTTTGAATCGTTCGATTGTCAGCTTAATTCATTT
AAATCTTTAGCTATGGAAAATCTTTTAATTTTGGCTTTTTCTATCATTTT
TTCCTTTTTTTTGTTTTAGAAAAATATTGTTCACAGAGATCTCAAGCTAG
GAAATATTGTTTTAAACAAACGGTAAGCTTTCCATGTAACTTTTTAAGTC
ATGTATCTACTTCCCTATTGGTAGAGATTGAATGAATAATATACTGTAGC
CAGTTTCGAAAAAGGGTGTTGTTTACTCTCGTGTACCTAATAGCCGGGGG
GGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAA
GCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGA
ATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGG
TGGAATAAGCGGGGGGGGTGGAATAAGCAGGGGGGTTGGAAAAAATCTGA
ATCAAAAATCAGAATTAATACAAAAAAGGGAACTTTCAAAAACATTTTCC
CAAAAATTAATAAGCGGGGGGGTTGGAATAAGAATGTCCTGGGTGGCTAT
TAGGTACCCGAGAGTAGGTCATTTTTTTTTCGATTTCTAAAGCTAATAGT
CTTGATTAATTTTAGGGAATCAATTATGTCCACTTAAAATCCTCTATATC
GTTTTGAAAGCTTCTAAATGATGTATTTCAGGTCTGAAGTGGTTTTTGTG
TCAGTCTTTGTCAATGAAAATCTGAGACCTTATTCACTCACCCCAATATT
AATTCTATATGAGCCGATTCCTATACACGTGTACGCCCGAAAAAAACAAA
CTAAGAAAGTTCATTTTCGTTCATCATCGATCGTTCACCTCTATTCTTTT
TTAGAACAAGACGGATTACTATTACTAATTTTTGTTTGGGCAAACATTTA
GTCAGAGGTGATGATTTGTTGAATGACCAGAGAGGGAGCCCTGCATATAT
AAGTCCTGACGTCCTTAGTGGTGAGTTCTTTTAATTATTTTTGGGCGGAT
TGTCAAAGTTTTGAACGTTTCTTGGAACTTAACTCTTTCTTTCATCCTTT
TTAACAAAAATCATAAAAGCTATAAGGGCCATTCCGAGAAAGTGTCAACC
ACGCTGGGAGAATTTATGCCTGATTGAACCACTTCTATGGGTGCTATGAA
ATGTTGCAATGGTCACGGTGTTCCTAGGTCTCTGCTGGCGGTATCCAGTC
AAAGATAAGCGTGACGTAACGTACCCCTTACTCTGGAATGGCCGCTAACT
CGATGCTATATTTCGATTGTATTTTGAATAATTTATCCAAAAATGTCACT
TTACTATTCTACTAGTGAACAAAAAATGAGGTAGGGGGTGAAGCATCAAT
AAGGGTTATGTATACAATTACTTTATATTTTTATGAATTTTTAGGTCGTC
CATACTCAGGCAAAGCATCAGACATGTGGGCGCTGGGCGTTGTTCTATAC
ACCATGCTGTACGGACAATTCCCATTCTACGATAGTGTACCACAGGAGTT
ATTTCGTAAGATCAAGACTGCTGAATACGTTATTCCAAAGTATGTTTCTT
TTATGTGCGTATAAATGCCGTTGTGATTTTTAAGATGTAGCACTTTGAAG
TCTTTAAAGAGTATCATTTTATCTCCCTTCATTTTTACACAACATTTTAG
ACAAATTTTTTTCCTTTTCGCGCCACGTGGTTACAAATTAAAGAAATTGT
TGTTTATTTTGCTACGTCAGCATATGGTACACTTTCAAAAGAAAATTGTT
AAGCTTAAATTGTCGAATACCCTTACAATGAACCATCTCTTTAATTTGCC
CTTACAGTGCAATTACTTTCGGAAGCTGAAAAACATATTCTGCTTATCCT
ACGGATGTGAAGCATTTTGGGTTCAAAACTCTTTATGATACGGCGGAGTC
TCCCTAACTCGAACACGAACAGAGAACACAAATCTGTTCGAATTATGGAA
ATTTCGAGTTATAAAGATTGTTAACTTAAGGTTACAAAAAGATTTGACTG
AATTTTTGGACCTACCCCGGTGGGGTGAAGGTCCTATAAATTAACCCGTG
TTCGTTAGTTCGTTCGTTCGTTAGTTACCAACTTTTCTCGAGATTGGCTC
ATTCAATTTTTCTGATTTTTTGCACAAAGGTGCATTACTATAAACCCTCG
AATGTGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGGCCGCT
AGAACCGGAAATGTCCCGAAAAAAGCGGTTTTTTGAGATTTTCTCGAGAT
TTTCTCATTAGTTTTTTGCGATTTTTTGCACATAGATGCACATAAGTACT
GCCGAAAAGGTGTTTCTTAATTGCTTTTTCCGTTCCAATAGATATATAAT
TCGAAATTTAAAATTATACATTACTTCCATTAAATTCTAATTATTCGTTT
TATAAATAGGTAGGTCCATTAAAGTATTGCTTGTTATTTCTTACTTAACT
ATCATTGCTGTCGTTTCCATTCTACCAGGGATAAGAGAGTATCAGAGGAC
ACAATTCTCCTGCTGCATCGATTGTTGATGTTGGATTCTTCAAAGAGGGC
AACTGCTGATGATGCATTGATACAGCTACAAACTACTGTCAGTTCCTGGT
AAGATCTCCCAACATCACTTCCTTCTACCTCTCCCTACCCACTCGAAAAA
TACGAATATATTGTCTCCAGGCTTCAGAAAGATTCCGTAAAACTTCATCC
CCGTAAGAAAAAGACACTGACGTCTGATGGATTTTCATCCTGAAATAAAG
TTTTGACAACAAAAATTATTTTGTAAAACAGGTGCCAAAAAGTTTGACAA
AAAAAATATTTTGTAAAATAGGTGCCAGTTTAGAGAAAGAATCAACACTA
TTTTTTTTATTCTGTTACTGACTTTTTCATTACAAGATTGGAGTCTATTT
TACGTTTCATTGAGATTTTTAAAGCTGGTTGCAACACTGGAGGACGTTGA
TATTTTTTTCACGTATTAACAAATATTTGTTTGTGCAAAGTTATTTTTAC
ATTGGATTCTAAGTACTTCATTATTCTATCTCAAAATTTAAGTTAGCCTT
CCCTTAACATTTTTAGTTTGCTCACAGTCTGAATTCGATCTTGTACACTT
TTTTTTCAAACACCTGGTATCTCTCTTCAGGTATTGCTCAACCGTTCTAC
ACGATGTTCAGATTGTGCCTGATATCGATCACCAACAAGATAAAGAAAAC
GCCACCAACTCAAATACTACTTCAAACGGTAACCCATCCTCACGGAAAAG
CTCTACAGAATCCATGGATAGCGTCATCTTGGTACAAACTCCAAAACATC
TCAAACAACCTCACAGACATTCAACTCGATATAGTCACCATAGACATCAA
CAAGAACTTCTGAGGCGAATTCAAAGTATGACTTCACCTCCACCCACATT
GAGACGTGTTAGTCGTAGCACTCCTTCACTTACGGAAAGTGATTTAGAAG
CATACGCTAGAGGGATTCGATCAATTGTTCCACTATAAAGACTTTGCTTA
ATTTCGCAGCAGAATTGTATTTTTGTGAAATTTCAATGACAGATGAGGAT
GCAGTATAGAATTATTTAAAGGTGGTTTCGTTTACATTTTCTGGTCGAAA
GCCTCCTGTAGCTGACTGTTACTGTCGCACAATTCTTTATAGGAACAACT
TTCCATGAGGACCAGCTTAAGAATAAATCAAATGAAAGGGTCAATTTAAG
CTTCTCTTAAGTCCCTCGAGTGAAGAAAGCATAAGTATATTGTGGCCTAA
CCTAAAACTAGAACAACCGATGTACAGGCAAAATTTACTGGTTATCAAAC
TGGTTATAAAAATTTTCTATTAGAGTATTTTTTTTGACCGTGCGCTTCCA
TTGAATATATTTTAAATTTTGAGTCTCTGGTTAAACACGATATTTTTTTA
GATCAAATATTGGGCCATTTCATTATATATCCATACAGGGGGGTTACGAA
CATTTCCAGGGGGAGGGGTAATCCGAGAAGAATTTCCAGGGGGAGTTGTT
TTCATTTTTCCAGGGTGTAATAACTTATTTTAAATTTTTAGGGGGTTTCA
GACTATGATTTAGTTCGTCCACCCGCACTCAAAAGGTAGGAAAATCTATT
TTCCAAGGGTTTTTCTGAAAATTTTCGGGGGTAATCACAAATTTCAAAGA
ATTTTTTTTTTGACGTGAAAAAGCTCGTCCGTCCCCTGTATGGATTTTTA
ATGTAACAACCCATTTCTCTGCCAAAAAGTTTCTAAAAGACAAATGATTT
GTGATAATTAGAGATTCCATTGACAGACCTCTATACTTCCTACTCGTTAG
AGAATATCAGAAGCTGTCCATTGTACTTGCTGAGAATAACTACCTATCAT
GGTCTTTATTCGCTATTTTTATATTCGATAGAAAATATATATTATAAAAT
TTCTCCAAAGCAATATTATGTTGATCATAATGTTATCAAAATATTTTTAA
TATAACCTATACAATTTTTTGAACCTAAAAATACTCTCTTTTTCCTTTTT
TTCGTGTGACTTATTTTTTACTTGTAAAAATCTATTATATACATATAATT
TTTTTGAAATTTAACTCGTCTTGTTTTGGGACGATATGGAGTTTTTACAA
GCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACAATTTTGTT
ACTTTTTATAAAGAACGCGTCATTTTTATTACTTCAAATGACCAATTATT
AGAGTATCTTATAAAAACTCCATCTCATCTGCTTGTTTTCCTTGTTTATC
TTAAACAATCTTCCCGTAAAAATTATATTTCCTTTTTGTCCCGAACAGAC
TTTGCACTAGTCCCGGGATAACTTAATCTTTGACTAAACCCTAACTATTT
CTTAGCTACGGTATAGTTTGTCCATATTCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004682-exon-sc0000047-1575043694:350253..350279 | TCONS_00004682-exon-sc0000047-1575043694:350253..350279 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1575043694:345072..345729 | TCONS_00004682-exon-sc0000047-1575043694:345072..345729 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1575043694:344458..344510 | TCONS_00004682-exon-sc0000047-1575043694:344458..344510 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1575043694:343610..343725 | TCONS_00004682-exon-sc0000047-1575043694:343610..343725 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1575043694:343041..343185 | TCONS_00004682-exon-sc0000047-1575043694:343041..343185 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1575043694:340332..340451 | TCONS_00004682-exon-sc0000047-1575043694:340332..340451 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1575043694:338047..339799 | TCONS_00004682-exon-sc0000047-1575043694:338047..339799 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:350253..350279 | TCONS_00004682-exon-sc0000047-1510915933:350253..350279 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:345072..345729 | TCONS_00004682-exon-sc0000047-1510915933:345072..345729 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:344458..344510 | TCONS_00004682-exon-sc0000047-1510915933:344458..344510 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:343610..343725 | TCONS_00004682-exon-sc0000047-1510915933:343610..343725 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:343041..343185 | TCONS_00004682-exon-sc0000047-1510915933:343041..343185 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:340332..340451 | TCONS_00004682-exon-sc0000047-1510915933:340332..340451 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1510915933:338047..339799 | TCONS_00004682-exon-sc0000047-1510915933:338047..339799 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:350253..350279 | TCONS_00004682-exon-sc0000047-1491911889:350253..350279 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:345072..345729 | TCONS_00004682-exon-sc0000047-1491911889:345072..345729 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:344458..344510 | TCONS_00004682-exon-sc0000047-1491911889:344458..344510 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:343610..343725 | TCONS_00004682-exon-sc0000047-1491911889:343610..343725 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:343041..343185 | TCONS_00004682-exon-sc0000047-1491911889:343041..343185 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:340332..340451 | TCONS_00004682-exon-sc0000047-1491911889:340332..340451 | Clytia hemisphaerica | exon |
| TCONS_00004682-exon-sc0000047-1491911889:338047..339799 | TCONS_00004682-exon-sc0000047-1491911889:338047..339799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:338047..350279 - |
Blast
BLAST of TCONS_00004682 vs. Swiss-Prot (Human)
Match: STK40 (Serine/threonine-protein kinase 40 OS=Homo sapiens GN=STK40 PE=1 SV=2) HSP 1 Score: 409.838 bits (1052), Expect = 1.578e-132 Identity = 207/332 (62.35%), Postives = 249/332 (75.00%), Query Frame = 2
Query: 197 KCAGPYVLGPSLGRSPVKSIVQCLARKMSTDNFFTIKLLTLTNSKE---SMNDVKQGKMLIHTEYSLLSLLHKQEGVIHTHGLFQDEV--IPEDTSDKAITSEEQETRFKKCRRLCLVLDCLEPHNYCQSTQDFENLQSYVIKEKKLCERKALVVFLDIIKVVKGLHEKNIVHRDLKLGNIVLNKRTRRITITNFCLGKHLVRGDDLLNDQRGSPAYISPDVLSGRPYSGKASDMWALGVVLYTMLYGQFPFYDSVPQELFRKIKTAEYVIPKDKRVSEDTIXXXXXXXXXDSSKRATADDALIQLQTTVSSWYC-STVLHDVQIVPDIDHQ 1174
K AGP++LGP LG SPV SIVQCLARK TD+F+ +K+LTL + + +QGKML+HTEYSLLSLLH Q+GV+H HGLFQD I EDT + K +R+CLVLDCL H++ T D NLQ YVIKEK+L ER+ +V+F D+++VV+ LH+KNIVHRDLKLGN+VLNKRT RITITNFCLGKHLV DLL DQRGSPAYISPDVLSGRPY GK SDMWALGVVL+TMLYGQFPFYDS+PQELFRKIK AEY IP+D RVSE+T+ L+ +LL+LD +R A D L L ++SW S++ +Q+VPDID Q
Sbjct: 30 KRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVK-------KMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQ 354
The following BLAST results are available for this feature:
|
