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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004727 ID=TCONS_00004727|Name=TCONS_00004727|organism=Clytia hemisphaerica|type=transcript|length=2314bp
ggcAGACATTATTAGCAAGAGTGTTTCAAGCAttccaatttttcaatatt
tgctATTAAAATTGAACAAACATTTCAATAGTAAAAATAGTTTATAAGCC
AATAATTAACCTAAGAATTCatttaatcaaattaatttgTACTTGATTTT
GTTTCAAAGGTTGTTGTTGCATTGCAAAAGCTACTTACAAGATGAAATGC
TAGTTATCTAATAAATTATAAGGCTATCTTTAATGTATAAAACCAgttaa
aaatgaataaatagaATCAATCAGCTTTTTCATCTTTGCGATCCATTCTC
TCTTCTTTGATAGCAGTCCAAATATACAATGCAATAATAATATGAATAAC
AACAACAGCCAGAATAACAGAAGCAACTGAACCATCTTCATAACCAAAAA
TTGCTTCCAAAATATATGTTCTGACgaaaaaatatgaaacaattGGTACA
GATAACATTGCTATTGTAAACATTAGCAGAGTCTTTAAGACATCCATTTC
TTTTGGGCCTAAAGTACCATCACTTCCTGGCatgattatttttttacttt
gtctATTGGAATTTCActgaaacaacaaattaaaatttcattatAGTATA
TACCGGGTGCATCAAAAAAAGATACAGAAAAATACAGCTTTGTTGACATT
TTTtaagcttcaggatttaaatttctttcattctctatcgtatagaggat
actctaacttgaattttgagttatcatacattaaatttgaaaaagtagtg
ccaaagttattaaaaaaactttttttcatgttgaaatttcaaaaaatcat
caatcacagcaagcaaacttttctcttgacatttacacataaaaatacca
aaaaaatctgTGTTGCATCGAAACTCGGtacagaatttaaaaatatggta
aATCAAGCtgtgggataatatttttggaaaagctgaaaaaagttGTGGAA
ATCTGcaagagaggttttgatgttttgtgtgtgctatgtgagaacacttt
tgaaaaaatagatcaccattcctcgactagttgctcaaagaacttgggtc
tgcattgagtttgctcgtGTTAGAAATGTCCATATGGcgtgcaaataaga
tggagaaattgttggcaaaatataaataagaaaaaaaaattgtgtttttg
tcatttgcaactccccaagcgattttaagttaCCTTAAAAGACCCGTCCA
GACCGAGCGACCAAAAAGCGGTAGAACAGTGGCTTTTTACCGATCCCGCA
TCTTTTTCTATCGGCTATGGATCGGTCACTCTCCTTTCACTTTAAAGCGG
CTTTCTAAGCGGCCTCTGTTTTTTGTGGCTACTTTCCCCAGGGATTTACC
ACCTTTTTTTGAGttcttcttttccttctttcttGCTTTAATTCATAAAG
ATAAAATTAAAGACCTGAATTATAGTACCTTTTAATAAAATTAGACAACT
GTAATAAAGGGCTGACCCGAAAAAGAGCCTTATTTTATATCATAAACCAT
TTATATTTATGAAGTAAAACCGTTTCTTGCCTTTGCTTTGTGGTCTTCAT
TTGTGctcaatttattttctttttactctTTCGTTTTAACGAAAAGACTT
CCTGCCCCAACACGACCTCCTCTAGCTCTAATTATATTTTCCTCGTAAAA
AAAGACATCCCTGTCTATGTTTGACCTCTTCTATAATTGCGTCTCCTCTC
CGACTAAGCACATGCCCCTGTCTCAATGTGACCTCCTCCAATTTTGATTT
CTCTTGTAACAAAAAGGCCCTGTCTCTTTGACCTCCTTTATATTCTCAAT
ATTTCGTGTGACCTGGGAAACTATAAGTTACCCATACTTCAGTTTGATCT
GCCTGTTTAACCCTCTTCTGTTTTACCAACTCTGTTCTTTATTTTATATA
TACCGTTTGCTTACAGCCTTCTTTCCTCTTAACTGATGACCGACCAAAac
aataaagaataaaaattaattatctTACCTTTCTTCTTTGTCTTTGATGA
AAGTGCTAAGTCTATTTACTCATCATAGTAAATTAATCTCACCTTGCAGC
TAACAAATAACTGGTTTTCTAAGAGTCCCacgtatataaaaaaaaagata
aaactcATCACTACTCTTCGAACTTTTTCCTTCttccttctttttgtttt
gattttaaaaaaagtctagtcatttctcagtacagccctcactaaccggt
cattattgtattagggTTAGGATTGGAGCTTGAAGTCACAATTTAAGGCT
GATGGCCTTCTTAAGGGCATTCGTAACCTGAGACTTAAGTTAGGATCCCG
TACGGGGAGAAGAC Run BLAST on NCBI transcript from alignment at sc0000047:701001..703314 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004727 ID=TCONS_00004727|Name=TCONS_00004727|organism=Clytia hemisphaerica|type=transcript|length=2314bp|location=Sequence derived from alignment at sc0000047:701001..703314 (Clytia hemisphaerica)
GTCTTCTCCCCGTACGGGATCCTAACTTAAGTCTCAGGTTACGAATGCCC
TTAAGAAGGCCATCAGCCTTAAATTGTGACTTCAAGCTCCAATCCTAAcc
ctaatacaataatgaccggttagtgagggctgtactgagaaatgactaga
ctttttttaaaatcaaaacaaaaagaaggaaGAAGGAAAAAGTTCGAAGA
GTAGTGATgagttttatctttttttttatatacgtGGGACTCTTAGAAAA
CCAGTTATTTGTTAGCTGCAAGGTGAGATTAATTTACTATGATGAGTAAA
TAGACTTAGCACTTTCATCAAAGACAAAGAAGAAAGGTAagataattaat
ttttattctttattgtTTTGGTCGGTCATCAGTTAAGAGGAAAGAAGGCT
GTAAGCAAACGGTATATATAAAATAAAGAACAGAGTTGGTAAAACAGAAG
AGGGTTAAACAGGCAGATCAAACTGAAGTATGGGTAACTTATAGTTTCCC
AGGTCACACGAAATATTGAGAATATAAAGGAGGTCAAAGAGACAGGGCCT
TTTTGTTACAAGAGAAATCAAAATTGGAGGAGGTCACATTGAGACAGGGG
CATGTGCTTAGTCGGAGAGGAGACGCAATTATAGAAGAGGTCAAACATAG
ACAGGGATGTCTTTTTTTACGAGGAAAATATAATTAGAGCTAGAGGAGGT
CGTGTTGGGGCAGGAAGTCTTTTCGTTAAAACGAAagagtaaaaagaaaa
taaattgagCACAAATGAAGACCACAAAGCAAAGGCAAGAAACGGTTTTA
CTTCATAAATATAAATGGTTTATGATATAAAATAAGGCTCTTTTTCGGGT
CAGCCCTTTATTACAGTTGTCTAATTTTATTAAAAGGTACTATAATTCAG
GTCTTTAATTTTATCTTTATGAATTAAAGCaagaaagaaggaaaagaaga
aCTCAAAAAAAGGTGGTAAATCCCTGGGGAAAGTAGCCACAAAAAACAGA
GGCCGCTTAGAAAGCCGCTTTAAAGTGAAAGGAGAGTGACCGATCCATAG
CCGATAGAAAAAGATGCGGGATCGGTAAAAAGCCACTGTTCTACCGCTTT
TTGGTCGCTCGGTCTGGACGGGTCTTTTAAGGtaacttaaaatcgcttgg
ggagttgcaaatgacaaaaacacaatttttttttcttatttatattttgc
caacaatttctccatcttatttgcacgCCATATGGACATTTCTAACacga
gcaaactcaatgcagacccaagttctttgagcaactagtcgaggaatggt
gatctattttttcaaaagtgttctcacatagcacacacaaaacatcaaaa
cctctcttgCAGATTTCCACaacttttttcagcttttccaaaaatattat
cccacaGCTTGATttaccatatttttaaattctgtaCCGAGTTTCGATGC
AACAcagatttttttggtatttttatgtgtaaatgtcaagagaaaagttt
gcttgctgtgattgatgattttttgaaatttcaacatgaaaaaaagtttt
tttaataactttggcactactttttcaaatttaatgtatgataactcaaa
attcaagttagagtatcctctatacgatagagaatgaaagaaatttaaat
cctgaagcttaAAAAATGTCAACAAAGCTGTATTTTTCTGTATCTTTTTT
TGATGCACCCGGTATATACTataatgaaattttaatttgttgtttcagTG
AAATTCCAATagacaaagtaaaaaaataatcatGCCAGGAAGTGATGGTA
CTTTAGGCCCAAAAGAAATGGATGTCTTAAAGACTCTGCTAATGTTTACA
ATAGCAATGTTATCTGTACCaattgtttcatattttttcGTCAGAACATA
TATTTTGGAAGCAATTTTTGGTTATGAAGATGGTTCAGTTGCTTCTGTTA
TTCTGGCTGTTGTTGTTATTCATATTATTATTGCATTGTATATTTGGACT
GCTATCAAAGAAGAGAGAATGGATCGCAAAGATGAAAAAGCTGATTGATt
ctatttattcatttttaacTGGTTTTATACATTAAAGATAGCCTTATAAT
TTATTAGATAACTAGCATTTCATCTTGTAAGTAGCTTTTGCAATGCAACA
ACAACCTTTGAAACAAAATCAAGTAcaaattaatttgattaaatGAATTC
TTAGGTTAATTATTGGCTTATAAACTATTTTTACTATTGAAATGTTTGTT
CAATTTTAATagcaaatattgaaaaattggaaTGCTTGAAACACTCTTGC
TAATAATGTCTgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004727-exon-sc0000047-1491911889:701001..703314 | TCONS_00004727-exon-sc0000047-1491911889:701001..703314 | Clytia hemisphaerica | exon |
| TCONS_00004727-exon-sc0000047-1510915933:701001..703314 | TCONS_00004727-exon-sc0000047-1510915933:701001..703314 | Clytia hemisphaerica | exon |
| TCONS_00004727-exon-sc0000047-1575043694:701001..703314 | TCONS_00004727-exon-sc0000047-1575043694:701001..703314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:701001..703314 . |
Blast
The following BLAST results are available for this feature:
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