TCONS_00004728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004728
Unique NameTCONS_00004728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004728 ID=TCONS_00004728|Name=TCONS_00004728|organism=Clytia hemisphaerica|type=transcript|length=236bp
NNTTTCGACAAAGTCGATCATGCAGTTGTACTTGGGAAATTAAAGCAATT
GGGTATATCCGGACCAATCCACAGATGGATTGAATCATTCCTTACTGAAA
GATATTAAACAGTAATAGTAAATGGTGTTAAGTCCAAAGCCCAGAAAGTA
ATTTCAGGAGTCCCTCAAGGCAGTGTATTGGGACCTCTTATATTTCTAAT
ATTGATTGGTGACATTGATGAAAAAGTACTGTACTN
Run BLAST on NCBI

transcript from alignment at sc0000047:750881..751116

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004728 ID=TCONS_00004728|Name=TCONS_00004728|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at sc0000047:750881..751116 (Clytia hemisphaerica)
NAGTACAGTACTTTTTCATCAATGTCACCAATCAATATTAGAAATATAAG
AGGTCCCAATACACTGCCTTGAGGGACTCCTGAAATTACTTTCTGGGCTT
TGGACTTAACACCATTTACTATTACTGTTTAATATCTTTCAGTAAGGAAT
GATTCAATCCATCTGTGGATTGGTCCGGATATACCCAATTGCTTTAATTT
CCCAAGTACAACTGCATGATCGACTTTGTCGAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002676XLOC_002676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004728-exon-sc0000047-1491911889:750881..751116TCONS_00004728-exon-sc0000047-1491911889:750881..751116Clytia hemisphaericaexon
TCONS_00004728-exon-sc0000047-1510915933:750881..751116TCONS_00004728-exon-sc0000047-1510915933:750881..751116Clytia hemisphaericaexon
TCONS_00004728-exon-sc0000047-1575043694:750881..751116TCONS_00004728-exon-sc0000047-1575043694:750881..751116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:750881..751116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.26369	4.55308	5.6056	6.42599	25.7661	20.9499	23.3119	30.5259	12.336	11.6732	6.20395	8.69983	6.80881	4.13162	6.40791	4.31614	2.16034	1.81358	5.2739	4.23818	0.241131	2.35584	0	0	19.6053	18.6275	8.2782	9.96866	0	2.00048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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