TCONS_00004739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004739
Unique NameTCONS_00004739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004739 ID=TCONS_00004739|Name=TCONS_00004739|organism=Clytia hemisphaerica|type=transcript|length=1752bp
CATTCATCGTTCACACAAGTTTTGAATATTCATTAAGCTTAATAATATGC
TGCTCGACAACCAATGAAAATGTTCATATTTTTGGATCAACAATAACAAA
TTGATATTGtattcattttttaaatagaaTTTCATATTTATTTCAGAATT
TAGTTTTATTCATTGATTGTCTTTTGTCATAATCAGAATTTATGACTCCT
GAAAAACACTTTTCAAGCTTCTCTTAAAGAGGTATAAGACTTTACGGTGT
TGAGTCATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGC
AATCTTTATCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTA
CTAATGAAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACC
ACTGCATACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGC
ATGCGTGTATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATC
AACCCTGGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAG
TATGTAGATGCTGAAGGGGTCGACCACTATGACACAGGATGGACTTCGTT
GACTATCATCACAAACAGTGCTCAAAATTCTTGCTTAATATCCGGAGGAA
GAAGTTGTGAGTTAGGAACCAGTACGAATTGGATCCATGTTCATGTAGAG
ACTGATTGGAATATCTGTCTTACACATCGGGCCGCTTTGTTCAACTACGA
CCATCAAACAGGGCGACTCCACCACCACTGCACTGGCTACCCAGTGTGTG
TTGATTTCAGTACCAAATGGGTGCAGATCAATAAAAACGGATGCCAGCAT
TATCCTGACATTGAGCACTTCTGGTTTACTTGGAGGCGAAGCTTTTCTGG
ATATCTGTGGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGG
TACAAGGCGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCT
GAAAGACAGTTTATTTTCAGATCCATCCCTCACGGTCCAGTCTACGTAAC
AGCATTCACCGGTCTACCTAGCTACGACATAGACAGTTCCTGGAACTCGT
TTGTTGGGAACGGTAAGTTTCCAAACAACCCTGACTGGTTCGGATACCAA
GATGACTTCCTCACACCTTCAAGTGAATGGCGAGATCAGTATGGTATGCG
CATGGAGGCATATTTCATTCCGCCAACAACAGGGAATTATCGATTCCGAA
TGGCTTGCGATAACATGTGCGAGTTTAACATAGGAGGAGATGATGGCACA
ACTTCTCATAAAACATTAGTGATTGATATGCGAGCTCACAATTTATACAC
TGGAATGTTTTCATTCGATACATACACCCAACAATACAGTGGGCACCATC
ATTTGCTTAAAGACAAACAATACTATGTCGAGTTATTGCTTCGGGAATGG
GGTGGAGGTGATCATGCCGAAATCGAATTTCTTGAACCCGATCGGAATAC
ATGGATTCCGATGACATCCCGATTTCTCAGAAAGTGCCGGTAATGCAATG
GGTCAAGAATTGATATATGAAGGATTCATATTAtgcacttttgaattttt
gtttcgaaataaAGGGTAGGCCTAAAACCTTTTACTTGAAATTGGTCTTT
GAAATTCATCCAAGGACCTAAATTGTTTGTCCCATATAGAAAGATGTATG
TCAGACAAAATCAAGTTCCCCTAGAATTTATCCAGATCTCTCaagttttc
at
Run BLAST on NCBI

protein sequence of TCONS_00004739-protein

>TCONS_00004739-protein ID=TCONS_00004739-protein|Name=TCONS_00004739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MGKISYYLCVICAIAIFIKTISTHNIIRLPATNEGIFSLRKKNKRIATTA
YKTFEVNELFDCADACVYDTSCKSINVDKSNQPWVCELVADDRNTKDEYV
DAEGVDHYDTGWTSLTIITNSAQNSCLISGGRSCELGTSTNWIHVHVETD
WNICLTHRAALFNYDHQTGRLHHHCTGYPVCVDFSTKWVQINKNGCQHYP
DIEHFWFTWRRSFSGYLWINNYCLVINNGNWVQGERVHVWSPCHDNYSER
QFIFRSIPHGPVYVTAFTGLPSYDIDSSWNSFVGNGKFPNNPDWFGYQDD
FLTPSSEWRDQYGMRMEAYFIPPTTGNYRFRMACDNMCEFNIGGDDGTTS
HKTLVIDMRAHNLYTGMFSFDTYTQQYSGHHHLLKDKQYYVELLLREWGG
GDHAEIEFLEPDRNTWIPMTSRFLRKCR
Run BLAST on NCBI

transcript from alignment at sc0000048:116831..122836+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004739 ID=TCONS_00004739|Name=TCONS_00004739|organism=Clytia hemisphaerica|type=transcript|length=6006bp|location=Sequence derived from alignment at sc0000048:116831..122836+ (Clytia hemisphaerica)
CATTCATCGTTCACACAAGTTTTGAATATTCATTAAGCTTAATAATATGC
TGCTCGACAACCAATGAAAATGTTCATATTTTTGGATCAACAATAACAAA
TTGATATTGtattcattttttaaatagaaTTTCATATTTATTTCAGAATT
TAGTTTTATTCATTGATTGTCTTTTGTCATAATCAGAATTTATGACTCCT
GAAAAACACTTTTCAAGCTTCTCTTAAAGAGGTATAAGACTTTACGGTGT
TGAGTCATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGC
AATCTTTATCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTA
CTAATGAAGgtataaaatttaatttaatttcatatttctttccTACTACT
AGCCTTTAATTTAAGCCTTTATAATCCGAATCTTTTGAAACTAAATTGAT
GATTTGAATCGTTCTATAATTCGAAGTAAAACAACAGTCCCTCATgttta
atttcttttgaaatccgttttttgaaattcgaatcctTCTTCAAATTTGA
AGGGAATTCTTGGTCCCTTTAAAGATCGAATTAAGGAAAGTCAACTATAA
CTCTATAATTCGACAAAACATCCGGTGTTTTTTTCGGTCATGTTAGCTCT
GACTGAATGTGAGCTCTAGTTTGTTAGACGACCAACTTTCTGCCCTGTCC
ATTCTAATTGTTAGAATAGGCAAAAAGTGGGCACATAGTTTACAGTCAAA
ATATTTGCTTGAAAAGGATTGAAAGAAgtcaatgcattgactttagacag
cccactttatgctcACTTCAATCCACAATTAAAATAGGAAAGgtgaaaag
tgggccgtcttaACTAGAGCTGACAGCAGCAATGTCTTAGTTGGAATTCT
GATGAAAAATGAATGGATATATGAATTAGTTGAAGTTTCCACCCTAATCA
AAACTCATGCTCataagaggcccccccagcggttggcgtgatggcgtgat
ggagggtttttcgtggcgtgatggcgtgaaatgttgaaaaaaacggcgtg
atggcgtgaaaatgaagtgccggcgtgatcgtgaaatcgagtttttttag
gcgtgatggcgtgaaatttgcagttNTAATTCACGCaaattcacaattaa
tgcccccccccctcaagttgcttgtacttttaaaagatttccattatttt
tacaggaattatttttcaaatttaattgaaatggatcctaaaatagcact
ttgaacccttcaaaattcaaaaattttctccgttacCCAACGGGGCTTTG
TTAATTTACTCAAACCGGTGCCCTTTGATGTAACCAGTTgtccaacaatt
tttgatatgcataagtcaagattacgtcatttttcctatcgaaaacaccc
gaaaaagCTGGAAATTACCCctgtgtattactaaaaatagaaaaacagag
gttaaatttcttccagatttttcgggtgtttccgataggaaaaatgatat
aatcttgacttactTACGCGTATGAGAATGCCGATGAAAAACTGANCGGC
CCCGACTGTGGTGGGGCCTCCTAtaaattagatttcattttaaaacataa
aagaaacggtgcaaacagttctaTTCATATGCCATACATCCTTGTAACTT
CCGATTGTTTTTAGCAGGTGCTAGCTAGTCTTTAAAATAAAGccgaatgc
tatgagagggtcgaaaattgaaaattttccccgtcagcgcaaaccatggt
tgcgcttcctccgtaactaacatttCCCTCTCTTTCTTAGATNGtttata
taacaaaaattaTGAGCATGAAAACTAAATGTAAATTTTAaaggcgtaat
ggcgtgaaatcgaaaaaaattggcgtgatcgtgaaaatcaaatttttcag
gcgtgatggcgtgaaatcgaaaaaaattggcgtgatcgtgaaaatcaaat
ttttcaggcgtgatggcgtgaaatcgaaaaaaaattggcgtgatggcgtg
aattttgggtccgctgggggggcctctcaTAAAATTCATCTTCGTAATCA
TATAAGATGGACAAGTGAAAAATTCGTAGCTAATATTAAAATCGACGGTT
TGGCCACCTCTTTTGGAAAACTATAAAGCTTCTAAATTAAAGGCATTGAA
GTAAATTTGACAAACTTTTGTCACCGATTCAGTGAGACACCCGACGGGAA
AAAACCCTACAATCTAAGCCCCTCTGggaaatttactttgatttcatctc
aATTAGAATTTCAATGTAAAAAGTtctactccaaaaccatccccactgga
ttgtTTGAGCTTAAATCAATAGAATTTCTACctacatttgaaattcaata
aaaattctAATCCTCGCTGTGGGGAAAGTTTCACCGGGGATGTGGGGCAG
GGGTTATTTGGAGATGAATTGTGAAACAGCATTCTGTTTACATTGGTATG
ATAACAACTTGCTAAATTTTCAATATCCTCAATCCTTAATCTTCAAACTT
TAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACCACTGCA
TACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGCATGCGT
GTATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATCAACCCT
GGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAGTATGTA
GATGCTGAAGGTAGCTTGTTTTTCATGAAAACATTTTGGGTTAAATCATT
AGTACTCTTAAAAAACACGTGGCCTTCCAGCTCTCATACTTTTTTCGTAA
AATTACCAAATAAAATTGAGAATCAAATGAATATTTTCAGTATCGGAAAT
ATATACGGCCGTTGAGAATCGGTTTCAGCCTTCTAAAGGGttaagaaaac
aacaaaattaatGGTCAGAATCTACACCATCGGTTAGGAATAAAGTCCCT
TTTTCTCTaatttagtctctctaagggcaACGGTTCGTGGTTCTGGTCCA
CACATACGCGACAATTTGCAGCCCTCTTCATGGGTATTGTTACTCTGAAA
AGCCTTTATTTAAAAGGTGGAATATTCATTTCTTTTTTCGTTACAGGGGT
CGACCACTATGACACAGGATGGACTTCGTTGACTATCATCACAAACAGTG
CTCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAACC
AGTACGAATTGGATCCATGTTCATGTAGAGACTGATTGGAATATCTGTCT
TACACATCGGGCCGCTTTGTTCAACTACGACCATCAAACAGGGCGACTCC
ACCACCACTGCACTGGCTACCCAGTGTGTGTTGATTTCAGTACCAAATGG
GTGCAGATCAATAAAAACGGATGCCAGCATTATCCTGACATTGAGCACTT
CTGGTTTACTTGGAGGCGAAGCTTTTGTaagttttgttaatttcataAAC
CAAGCCCACACGTCACACTTATTTAACAAGTTTCACACCATTGTGACACT
ATCATGCTCACAACTCTCTGAAACTTTTTTCGTTCTTACAGCCAATGAAT
TTTTCGTTCGTCTAAGTTTATCGTTCATAACATTAAGGACTGACTTAATG
TTacagtctctataactcgaacacgcaaggagaacgcaaatttgttcgag
ttaaaagaACATTCGAGAGCTTGAGTAGGGTTTATAAGgtatttttaact
gaagggactagaaaacttattcgagttaaggagacattcgagttaaagag
tttCAAATTAAAGAGACTCCATTATCATTTATTTTCAAGCTGGATATCTG
TGGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGGTACAAGG
CGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCTGAAAGAC
AGTTTATTTTCAGATCCATCCGTAAGTATCTTTTACATTTCTTAAGTAGC
GATGACCGAGGGATCAAGGCATCAGTGTTTGAAATCACGGGCTCCCGGTT
TGAATCCCTGCTCTTttcaatgttccgttcagttcataaaTAGCCAAATC
GGTTGACTGTCTGGCCCAGTAAATACAATCaaaaaagtcctagattactg
ggctatccacgtaaaatattgacTTTAAATCATTAAAAGTCAGAGAAAAG
TCTTCTGTTTGTGACTTATGTACCATATATTAACTGTCGTTTAAGGTTGG
GACAATAATTTTTGACATCGTTTTACGGTTTTGCTCTCATAGTTAGTATT
GAGTCTGATAGCCTCGAATTCAACTATCATTGGTTCTTTTTAAAGCTCAC
GGTCCAGTCTACGTAACAGCATTCACCGGTCTACCTAGCTACGACATAGA
CAGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTTTCCAAACAACCCTG
ACTGGTTCGGATACCAAGATGACTTCCTCACACCTTCAAGTGAATGGTGA
GTTATCTGTTTAAATGCCAACTCTAACTTCGTTCGCCTGGTATCATCGGC
ACCGGTATTTTTATGCTTACCGATAGAGCCGGATAATCTCCTGACTTTAC
CAAAGTAGTTTAAATAAAGCTTGTTATACACAGGGACGAGGTTGAGCCAA
CTCACTTAGTTTCTGCAACTCcaatttatttcaaaacataACGTATCCTC
CATGCAGAGGAATTCCAAAGAGGACTGCacaaatccgtcaaaaataaccG
GAATCCATCGGGGTTGATTTAAAAATCTGGTAAAAGTCAAAATCACAGGA
GCTTTAAACCTAAAAGTTGAGACAAACCTTTGACTTCGCACTTTAAGGTA
TCGAACACTCTCTCAAATAATAAATTCATGCTCAAATGATCAACAACGAT
ATTGCTGATAATTCTATCACTTTTTCTGTCGATCATTTCCTTCAATCACT
AGGCGAGATCAGTATGGTATGCGCATGGAGGCATATTTCATTCCGCCAAC
AACAGGGAATTATCGATTCCGAATGGCTTGCGATAACATGTGCGAGTTTA
ACATAGGAGGAGATGATGGCACAACTTCTCATAAAACATTAGTGATTGAT
ATGCGAGCTCACAATTTATACACTGGAATGTTTTCATTCGATACGTAAGT
AATATTCacgacagctgattggttataagtttcaaccaatcagctgttgt
tTCCGTGGAATATCATTTTTCAgcagtaaactgttgaaaattccatcgaa
aatcactgattttcaaatatattaaatatttcactgaagttttaaatcta
gagtaaaacaatggataacttttgttttcgaatcatacctaaaattcttt
aaattgagaaataatgataaaaaattaacgccgcttttaggttaaaattg
taaaatattggTCCTTTTTACACCAGCCTTTTTAACGCCACGAGCACAAC
AATAACGCCAATAAAGGTTGGTGTTCCGATAAATGACCGATAAAGTATCc
aagaaaattcaattttatcttttctattttttgatattttaggcGCTAGA
AGAACCTTTTTGGCTTTTCATAaatgaattatttttaattgtCGATTGAT
CTCTACAATTATTTGCAATTAGTATTCACCCCTTAAATTTTcctaattta
aattttaaaatttgtttaacTTCAGATACACCCAACAATACAGTGGGCAC
CATCATTTGCTTAAAGACAAACAATACTATGTCGAGTTATTGCTTCGGGA
ATGGGGTGGAGGTGATCATGCCGAAATCGAATTTCTTGAACCCGATCGGA
ATACATGGATTCCGATGACATCCCGATTTCTCAGAAAGTGCCGGTAATGC
AATGGGTCAAGAATTGATATATGAAGGATTCATATTAtgcacttttgaat
ttttgtttcgaaataaAGGGTAGGCCTAAAACCTTTTACTTGAAATTGGT
CTTTGAAATTCATCCAAGGACCTAAATTGTTTGTCCCATATAGAAAGATG
TATGTCAGACAAAATCAAGTTCCCCTAGAATTTATCCAGATCTCTCaagt
tttcat

Coding sequence (CDS) from alignment at sc0000048:116831..122836+

>TCONS_00004739 ID=TCONS_00004739|Name=TCONS_00004739|organism=Clytia hemisphaerica|type=CDS|length=9009bp|location=Sequence derived from alignment at sc0000048:116831..122836+ (Clytia hemisphaerica)
ATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGCAATCTT
TATCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTACTAATG
AAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACCACTGCA
TACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGCATGCGT
GTATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATCAACCCT
GGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAGTATGTA
GATGCTGAAGGGGTCGACCACTATGACACAGGATGGACTTCGTTGACTAT
CATCACAAACAGTGCTCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTT
GTGAGTTAGGAACCAGTACGAATTGGATCCATGTTCATGTAGAGACTGAT
TGGAATATCTGTCTTACACATCGGGCCGCTTTGTTCAACTACGACCATCA
AACAGGGCGACTCCACCACCACTGCACTGGCTACCCAGTGTGTGTTGATT
TCAGTACCAAATGGGTGCAGATCAATAAAAACGGATGCCAGCATTATCCT
GACATTGAGCACTTCTGGTTTACTTGGAGGCGAAGCTTTTCTGGATATCT
GTGGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGGTACAAG
GCGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCTGAAAGA
CAGTTTATTTTCAGATCCATCCCTCACGGTCCAGTCTACGTAACAGCATT
CACCGGTCTACCTAGCTACGACATAGACAGTTCCTGGAACTCGTTTGTTG
GGAACGGTAAGTTTCCAAACAACCCTGACTGGTTCGGATACCAAGATGAC
TTCCTCACACCTTCAAGTGAATGGCGAGATCAGTATGGTATGCGCATGGA
GGCATATTTCATTCCGCCAACAACAGGGAATTATCGATTCCGAATGGCTT
GCGATAACATGTGCGAGTTTAACATAGGAGGAGATGATGGCACAACTTCT
CATAAAACATTAGTGATTGATATGCGAGCTCACAATTTATACACTGGAAT
GTTTTCATTCGATACATACACCCAACAATACAGTGGGCACCATCATTTGC
TTAAAGACAAACAATACTATGTCGAGTTATTGCTTCGGGAATGGGGTGGA
GGTGATCATGCCGAAATCGAATTTCTTGAACCCGATCGGAATACATGGAT
TCCGATGACATCCCGATTTCTCAGAAAGTGCCGGTAAATGGGAAAAATAT
CTTATTATTTGTGTGTTATTTGTGCCATTGCAATCTTTATCAAGACCATT
TCAACACATAATATTATACGATTGCCAGCTACTAATGAAGGAATCTTCTC
ACTTCGCAAGAAAAACAAACGCATTGCAACCACTGCATACAAAACATTCG
AAGTGAACGAATTATTCGATTGCGCTGACGCATGCGTGTATGATACTTCA
TGCAAATCCATCAATGTGGACAAGAGTAATCAACCCTGGGTTTGCGAGTT
AGTTGCGGATGACCGAAACACGAAAGACGAGTATGTAGATGCTGAAGGGG
TCGACCACTATGACACAGGATGGACTTCGTTGACTATCATCACAAACAGT
GCTCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAAC
CAGTACGAATTGGATCCATGTTCATGTAGAGACTGATTGGAATATCTGTC
TTACACATCGGGCCGCTTTGTTCAACTACGACCATCAAACAGGGCGACTC
CACCACCACTGCACTGGCTACCCAGTGTGTGTTGATTTCAGTACCAAATG
GGTGCAGATCAATAAAAACGGATGCCAGCATTATCCTGACATTGAGCACT
TCTGGTTTACTTGGAGGCGAAGCTTTTCTGGATATCTGTGGATAAACAAC
TATTGTTTGGTGATTAATAATGGTAATTGGGTACAAGGCGAACGAGTTCA
TGTCTGGAGTCCTTGCCATGATAACTATTCTGAAAGACAGTTTATTTTCA
GATCCATCCCTCACGGTCCAGTCTACGTAACAGCATTCACCGGTCTACCT
AGCTACGACATAGACAGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTT
TCCAAACAACCCTGACTGGTTCGGATACCAAGATGACTTCCTCACACCTT
CAAGTGAATGGCGAGATCAGTATGGTATGCGCATGGAGGCATATTTCATT
CCGCCAACAACAGGGAATTATCGATTCCGAATGGCTTGCGATAACATGTG
CGAGTTTAACATAGGAGGAGATGATGGCACAACTTCTCATAAAACATTAG
TGATTGATATGCGAGCTCACAATTTATACACTGGAATGTTTTCATTCGAT
ACATACACCCAACAATACAGTGGGCACCATCATTTGCTTAAAGACAAACA
ATACTATGTCGAGTTATTGCTTCGGGAATGGGGTGGAGGTGATCATGCCG
AAATCGAATTTCTTGAACCCGATCGGAATACATGGATTCCGATGACATCC
CGATTTCTCAGAAAGTGCCGGTAAATGGGAAAAATATCTTATTATTTGTG
TGTTATTTGTGCCATTGCAATCTTTATCAAGACCATTTCAACACATAATA
TTATACGATTGCCAGCTACTAATGAAGGAATCTTCTCACTTCGCAAGAAA
AACAAACGCATTGCAACCACTGCATACAAAACATTCGAAGTGAACGAATT
ATTCGATTGCGCTGACGCATGCGTGTATGATACTTCATGCAAATCCATCA
ATGTGGACAAGAGTAATCAACCCTGGGTTTGCGAGTTAGTTGCGGATGAC
CGAAACACGAAAGACGAGTATGTAGATGCTGAAGGGGTCGACCACTATGA
CACAGGATGGACTTCGTTGACTATCATCACAAACAGTGCTCAAAATTCTT
GCTTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAACCAGTACGAATTGG
ATCCATGTTCATGTAGAGACTGATTGGAATATCTGTCTTACACATCGGGC
CGCTTTGTTCAACTACGACCATCAAACAGGGCGACTCCACCACCACTGCA
CTGGCTACCCAGTGTGTGTTGATTTCAGTACCAAATGGGTGCAGATCAAT
AAAAACGGATGCCAGCATTATCCTGACATTGAGCACTTCTGGTTTACTTG
GAGGCGAAGCTTTTCTGGATATCTGTGGATAAACAACTATTGTTTGGTGA
TTAATAATGGTAATTGGGTACAAGGCGAACGAGTTCATGTCTGGAGTCCT
TGCCATGATAACTATTCTGAAAGACAGTTTATTTTCAGATCCATCCCTCA
CGGTCCAGTCTACGTAACAGCATTCACCGGTCTACCTAGCTACGACATAG
ACAGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTTTCCAAACAACCCT
GACTGGTTCGGATACCAAGATGACTTCCTCACACCTTCAAGTGAATGGCG
AGATCAGTATGGTATGCGCATGGAGGCATATTTCATTCCGCCAACAACAG
GGAATTATCGATTCCGAATGGCTTGCGATAACATGTGCGAGTTTAACATA
GGAGGAGATGATGGCACAACTTCTCATAAAACATTAGTGATTGATATGCG
AGCTCACAATTTATACACTGGAATGTTTTCATTCGATACATACACCCAAC
AATACAGTGGGCACCATCATTTGCTTAAAGACAAACAATACTATGTCGAG
TTATTGCTTCGGGAATGGGGTGGAGGTGATCATGCCGAAATCGAATTTCT
TGAACCCGATCGGAATACATGGATTCCGATGACATCCCGATTTCTCAGAA
AGTGCCGGTAAATGGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCC
ATTGCAATCTTTATCAAGACCATTTCAACACATAATATTATACGATTGCC
AGCTACTAATGAAGGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTG
CAACCACTGCATACAAAACATTCGAAGTGAACGAATTATTCGATTGCGCT
GACGCATGCGTGTATGATACTTCATGCAAATCCATCAATGTGGACAAGAG
TAATCAACCCTGGGTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAG
ACGAGTATGTAGATGCTGAAGGGGTCGACCACTATGACACAGGATGGACT
TCGTTGACTATCATCACAAACAGTGCTCAAAATTCTTGCTTAATATCCGG
AGGAAGAAGTTGTGAGTTAGGAACCAGTACGAATTGGATCCATGTTCATG
TAGAGACTGATTGGAATATCTGTCTTACACATCGGGCCGCTTTGTTCAAC
TACGACCATCAAACAGGGCGACTCCACCACCACTGCACTGGCTACCCAGT
GTGTGTTGATTTCAGTACCAAATGGGTGCAGATCAATAAAAACGGATGCC
AGCATTATCCTGACATTGAGCACTTCTGGTTTACTTGGAGGCGAAGCTTT
TCTGGATATCTGTGGATAAACAACTATTGTTTGGTGATTAATAATGGTAA
TTGGGTACAAGGCGAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACT
ATTCTGAAAGACAGTTTATTTTCAGATCCATCCCTCACGGTCCAGTCTAC
GTAACAGCATTCACCGGTCTACCTAGCTACGACATAGACAGTTCCTGGAA
CTCGTTTGTTGGGAACGGTAAGTTTCCAAACAACCCTGACTGGTTCGGAT
ACCAAGATGACTTCCTCACACCTTCAAGTGAATGGCGAGATCAGTATGGT
ATGCGCATGGAGGCATATTTCATTCCGCCAACAACAGGGAATTATCGATT
CCGAATGGCTTGCGATAACATGTGCGAGTTTAACATAGGAGGAGATGATG
GCACAACTTCTCATAAAACATTAGTGATTGATATGCGAGCTCACAATTTA
TACACTGGAATGTTTTCATTCGATACATACACCCAACAATACAGTGGGCA
CCATCATTTGCTTAAAGACAAACAATACTATGTCGAGTTATTGCTTCGGG
AATGGGGTGGAGGTGATCATGCCGAAATCGAATTTCTTGAACCCGATCGG
AATACATGGATTCCGATGACATCCCGATTTCTCAGAAAGTGCCGGTAAAT
GGGAAAAATATCTTATTATTTGTGTGTTATTTGTGCCATTGCAATCTTTA
TCAAGACCATTTCAACACATAATATTATACGATTGCCAGCTACTAATGAA
GGAATCTTCTCACTTCGCAAGAAAAACAAACGCATTGCAACCACTGCATA
CAAAACATTCGAAGTGAACGAATTATTCGATTGCGCTGACGCATGCGTGT
ATGATACTTCATGCAAATCCATCAATGTGGACAAGAGTAATCAACCCTGG
GTTTGCGAGTTAGTTGCGGATGACCGAAACACGAAAGACGAGTATGTAGA
TGCTGAAGGGGTCGACCACTATGACACAGGATGGACTTCGTTGACTATCA
TCACAAACAGTGCTCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTTGT
GAGTTAGGAACCAGTACGAATTGGATCCATGTTCATGTAGAGACTGATTG
GAATATCTGTCTTACACATCGGGCCGCTTTGTTCAACTACGACCATCAAA
CAGGGCGACTCCACCACCACTGCACTGGCTACCCAGTGTGTGTTGATTTC
AGTACCAAATGGGTGCAGATCAATAAAAACGGATGCCAGCATTATCCTGA
CATTGAGCACTTCTGGTTTACTTGGAGGCGAAGCTTTTCTGGATATCTGT
GGATAAACAACTATTGTTTGGTGATTAATAATGGTAATTGGGTACAAGGC
GAACGAGTTCATGTCTGGAGTCCTTGCCATGATAACTATTCTGAAAGACA
GTTTATTTTCAGATCCATCCCTCACGGTCCAGTCTACGTAACAGCATTCA
CCGGTCTACCTAGCTACGACATAGACAGTTCCTGGAACTCGTTTGTTGGG
AACGGTAAGTTTCCAAACAACCCTGACTGGTTCGGATACCAAGATGACTT
CCTCACACCTTCAAGTGAATGGCGAGATCAGTATGGTATGCGCATGGAGG
CATATTTCATTCCGCCAACAACAGGGAATTATCGATTCCGAATGGCTTGC
GATAACATGTGCGAGTTTAACATAGGAGGAGATGATGGCACAACTTCTCA
TAAAACATTAGTGATTGATATGCGAGCTCACAATTTATACACTGGAATGT
TTTCATTCGATACATACACCCAACAATACAGTGGGCACCATCATTTGCTT
AAAGACAAACAATACTATGTCGAGTTATTGCTTCGGGAATGGGGTGGAGG
TGATCATGCCGAAATCGAATTTCTTGAACCCGATCGGAATACATGGATTC
CGATGACATCCCGATTTCTCAGAAAGTGCCGGTAAATGGGAAAAATATCT
TATTATTTGTGTGTTATTTGTGCCATTGCAATCTTTATCAAGACCATTTC
AACACATAATATTATACGATTGCCAGCTACTAATGAAGGAATCTTCTCAC
TTCGCAAGAAAAACAAACGCATTGCAACCACTGCATACAAAACATTCGAA
GTGAACGAATTATTCGATTGCGCTGACGCATGCGTGTATGATACTTCATG
CAAATCCATCAATGTGGACAAGAGTAATCAACCCTGGGTTTGCGAGTTAG
TTGCGGATGACCGAAACACGAAAGACGAGTATGTAGATGCTGAAGGGGTC
GACCACTATGACACAGGATGGACTTCGTTGACTATCATCACAAACAGTGC
TCAAAATTCTTGCTTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAACCA
GTACGAATTGGATCCATGTTCATGTAGAGACTGATTGGAATATCTGTCTT
ACACATCGGGCCGCTTTGTTCAACTACGACCATCAAACAGGGCGACTCCA
CCACCACTGCACTGGCTACCCAGTGTGTGTTGATTTCAGTACCAAATGGG
TGCAGATCAATAAAAACGGATGCCAGCATTATCCTGACATTGAGCACTTC
TGGTTTACTTGGAGGCGAAGCTTTTCTGGATATCTGTGGATAAACAACTA
TTGTTTGGTGATTAATAATGGTAATTGGGTACAAGGCGAACGAGTTCATG
TCTGGAGTCCTTGCCATGATAACTATTCTGAAAGACAGTTTATTTTCAGA
TCCATCCCTCACGGTCCAGTCTACGTAACAGCATTCACCGGTCTACCTAG
CTACGACATAGACAGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTTTC
CAAACAACCCTGACTGGTTCGGATACCAAGATGACTTCCTCACACCTTCA
AGTGAATGGCGAGATCAGTATGGTATGCGCATGGAGGCATATTTCATTCC
GCCAACAACAGGGAATTATCGATTCCGAATGGCTTGCGATAACATGTGCG
AGTTTAACATAGGAGGAGATGATGGCACAACTTCTCATAAAACATTAGTG
ATTGATATGCGAGCTCACAATTTATACACTGGAATGTTTTCATTCGATAC
ATACACCCAACAATACAGTGGGCACCATCATTTGCTTAAAGACAAACAAT
ACTATGTCGAGTTATTGCTTCGGGAATGGGGTGGAGGTGATCATGCCGAA
ATCGAATTTCTTGAACCCGATCGGAATACATGGATTCCGATGACATCCCG
ATTTCTCAGAAAGTGCCGGTAAATGGGAAAAATATCTTATTATTTGTGTG
TTATTTGTGCCATTGCAATCTTTATCAAGACCATTTCAACACATAATATT
ATACGATTGCCAGCTACTAATGAAGGAATCTTCTCACTTCGCAAGAAAAA
CAAACGCATTGCAACCACTGCATACAAAACATTCGAAGTGAACGAATTAT
TCGATTGCGCTGACGCATGCGTGTATGATACTTCATGCAAATCCATCAAT
GTGGACAAGAGTAATCAACCCTGGGTTTGCGAGTTAGTTGCGGATGACCG
AAACACGAAAGACGAGTATGTAGATGCTGAAGGGGTCGACCACTATGACA
CAGGATGGACTTCGTTGACTATCATCACAAACAGTGCTCAAAATTCTTGC
TTAATATCCGGAGGAAGAAGTTGTGAGTTAGGAACCAGTACGAATTGGAT
CCATGTTCATGTAGAGACTGATTGGAATATCTGTCTTACACATCGGGCCG
CTTTGTTCAACTACGACCATCAAACAGGGCGACTCCACCACCACTGCACT
GGCTACCCAGTGTGTGTTGATTTCAGTACCAAATGGGTGCAGATCAATAA
AAACGGATGCCAGCATTATCCTGACATTGAGCACTTCTGGTTTACTTGGA
GGCGAAGCTTTTCTGGATATCTGTGGATAAACAACTATTGTTTGGTGATT
AATAATGGTAATTGGGTACAAGGCGAACGAGTTCATGTCTGGAGTCCTTG
CCATGATAACTATTCTGAAAGACAGTTTATTTTCAGATCCATCCCTCACG
GTCCAGTCTACGTAACAGCATTCACCGGTCTACCTAGCTACGACATAGAC
AGTTCCTGGAACTCGTTTGTTGGGAACGGTAAGTTTCCAAACAACCCTGA
CTGGTTCGGATACCAAGATGACTTCCTCACACCTTCAAGTGAATGGCGAG
ATCAGTATGGTATGCGCATGGAGGCATATTTCATTCCGCCAACAACAGGG
AATTATCGATTCCGAATGGCTTGCGATAACATGTGCGAGTTTAACATAGG
AGGAGATGATGGCACAACTTCTCATAAAACATTAGTGATTGATATGCGAG
CTCACAATTTATACACTGGAATGTTTTCATTCGATACATACACCCAACAA
TACAGTGGGCACCATCATTTGCTTAAAGACAAACAATACTATGTCGAGTT
ATTGCTTCGGGAATGGGGTGGAGGTGATCATGCCGAAATCGAATTTCTTG
AACCCGATCGGAATACATGGATTCCGATGACATCCCGATTTCTCAGAAAG
TGCCGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002683XLOC_002683Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004739-proteinTCONS_00004739-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004739-exon-sc0000048-1491911889:116831..117189TCONS_00004739-exon-sc0000048-1491911889:116831..117189Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:116831..117189TCONS_00004739-exon-sc0000048-1510915933:116831..117189Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:116831..117189TCONS_00004739-exon-sc0000048-1575043694:116831..117189Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1491911889:119334..119540TCONS_00004739-exon-sc0000048-1491911889:119334..119540Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:119334..119540TCONS_00004739-exon-sc0000048-1510915933:119334..119540Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:119334..119540TCONS_00004739-exon-sc0000048-1575043694:119334..119540Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1491911889:119927..120256TCONS_00004739-exon-sc0000048-1491911889:119927..120256Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:119927..120256TCONS_00004739-exon-sc0000048-1510915933:119927..120256Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:119927..120256TCONS_00004739-exon-sc0000048-1575043694:119927..120256Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1491911889:120620..120751TCONS_00004739-exon-sc0000048-1491911889:120620..120751Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:120620..120751TCONS_00004739-exon-sc0000048-1510915933:120620..120751Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:120620..120751TCONS_00004739-exon-sc0000048-1575043694:120620..120751Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1491911889:121126..121276TCONS_00004739-exon-sc0000048-1491911889:121126..121276Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:121126..121276TCONS_00004739-exon-sc0000048-1510915933:121126..121276Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:121126..121276TCONS_00004739-exon-sc0000048-1575043694:121126..121276Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1491911889:121733..121924TCONS_00004739-exon-sc0000048-1491911889:121733..121924Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:121733..121924TCONS_00004739-exon-sc0000048-1510915933:121733..121924Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:121733..121924TCONS_00004739-exon-sc0000048-1575043694:121733..121924Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1491911889:122456..122836TCONS_00004739-exon-sc0000048-1491911889:122456..122836Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1510915933:122456..122836TCONS_00004739-exon-sc0000048-1510915933:122456..122836Clytia hemisphaericaexon
TCONS_00004739-exon-sc0000048-1575043694:122456..122836TCONS_00004739-exon-sc0000048-1575043694:122456..122836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:116831..122836 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.13536e-07	0	0	0	0	0	0	0	4.45371	4.09422	1.43333	0.952057	1.07015	1.75977	12.8114	11.8968	2.52571	2.21577	0.118839	3.18039e-08	0.533692	3.53858e-07	0.137991	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR011658PA14_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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