TCONS_00004762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004762
Unique NameTCONS_00004762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004762 ID=TCONS_00004762|Name=TCONS_00004762|organism=Clytia hemisphaerica|type=transcript|length=720bp
agattttgtATTATAAGTTAAAAGGATAGCAAgcaaaatataatatatat
caTAATCATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGAC
AGTGGTCCTCAATCTTTCCAAATGAACAAGTAACGGAAACCCAATCAACA
CTGTTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCT
TAGagcTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatG
TGAATTTGAAGATTTTACGGGATGATAATAATTGTCCTGAAGCATGCAGG
GTAATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtT
GAGGGCTGTACTGGTTGGTATTTACGAGGATCCAGAGGACCCAGATACTG
TTATTGAGCAGTATACATTTAAGTTTGCCTATGGGGATGGTAATGGAATT
GACATTTACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGA
AACCAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTC
AGACGCTTAGTCCTCTTCCTGatGATGTTATGATGACAATGAAACTGGTC
TATTATGATGAAATCACACCCGAAGATTACAACCCACCTGGCTTCAAGGA
GTGTGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAG
TTGGAGATGTTGCCACAGTA
Run BLAST on NCBI

protein sequence of TCONS_00004762-protein

>TCONS_00004762-protein ID=TCONS_00004762-protein|Name=TCONS_00004762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MATAQQVRSQTKQGQWSSIFPNEQVTETQSTLFVKKLLAVAVSSISYLRA
LFPENAFGDRCLEDVNLKILRDDNNCPEACRVIQWIRGCFDALEKKYLRA
VLVGIYEDPEDPDTVIEQYTFKFAYGDGNGIDIYRNGAKISSAKSDKETK
KATVRLLRTIVFLSQTLSPLPDDVMMTMKLVYYDEITPEDYNPPGFKECA
TDEFAFKEEPMNIKVGDVATV
Run BLAST on NCBI

transcript from alignment at sc0000048:561117..566372+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004762 ID=TCONS_00004762|Name=TCONS_00004762|organism=Clytia hemisphaerica|type=transcript|length=5256bp|location=Sequence derived from alignment at sc0000048:561117..566372+ (Clytia hemisphaerica)
agattttgtATTATAAGTTAAAAGGATAGCAAgcaaaatataatatatat
caTAATCATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGAC
AGGTAAAGAtgacttttttatgaaatgtgGGGAGATCTTGAAACTTTTTC
ACCTCAAGTAATCATTAGGCGAGGCCAatataatttgttgttttacNTAA
ATGTGGGGAGATCAAAGTTCCACCTCAAGTAATCATTAGGTGAGGCCAat
ataatttgttgttttactgGCCATGCTACTTAAAAAGAGGGTCCGGTccg
tcggtcggcgaaaaaataaaaataaaagtagaatttcacctataaaatct
cctaaaaaaccagcaaaaactactacaatatgaaaaaaatgcaaaataga
aaatgaaagaCAGAAAACGGTCCAATTTatggatgaaatgaaaaattgaa
cataaaattctcaaaatcatGGATATAAACtaccaaaactttgaaaattt
gccAGTCTGTAAAgcagtgaaaataaaaatgtactaccaaaatcaatttt
acttttattttgatatctggaatttcagggtcggtcaggcCGGCAAAACA
ATTGATCatattggtctcgccttatgtaagaaagttgttttttacatttt
actattCTCAGGAGGTAAAACAATCAAAGCCTATTtcattatcaaatttt
cattacaAAATGATATAACTAGAAGTTTGTTGCCATtaaaatggaaagaa
acaacAATGATTATTGATATCTTGAAACTGGAAAGCTTGAAGATAATGAA
ACcttatgtttttttaatttacttaTTTCTTTCTCTATCTTTTGTAGTGG
TCCTCAATCTTTCCAAATGAACAAGTAACGGGTAAGTTAtattttgtttg
gttttctATGATCCATTAATCAATTTGTACAATCTATACTATTGAGGGTA
GAGTTGAGGGTAGTCAATTGTTACTCTAGGCACACAAACTTTCATGAAGT
GTGACAAAAGTTTGTTCACTTACCTATTGTTAAAAATGCTTGTGAAAATC
AGGGTCTACaaaattgaattgttatttCCTCTAAAGTTTTCTCTTTGTTC
AAAATAcagataccttaagggaacttaacTTAAGGCAACTAATTTTTACG
GTACtagtttttgcgcttttgggtgtctaccgtttccgcaaaatacaatt
tttactaaaaatcctaaaaaaccCTTAGGAATAGGAAATACTTTGGCAAA
AAGTGGGTGtcaaccgcaaaaattagttctgcAAAATACGCCAATTTAGT
ATAGTACCCTCGTACGGAAAAATAagtttcaccaaaattagttcccttaa
ggtaatttaTCAGATACAAAGATTTACAATTTGTTGCCCTATCTAAATAA
gttcctcaaaacaaaatttttacatCATTAATTTTTGTTAAACACACATT
TTAGGcagaaaaaaacttaatttcccctgctttttgccaaaattagttcc
catcAAAATTAAGCAAGTTGCTGCctcaccaaaataagtttctCACAATA
TGTATTAAATCTTTCATGAGGGTTTTTGCTACTTGACAAAGTTAGTTTTC
GACAAAACTTTTCCCCTTAGGGTAGTAGACATAACCGCTTTTTCACTTTT
ATCCTCTAGAAACCCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTT
GCAGTAAGTAAATATACATTTTTATCTCAATTTACAGCCTATTGATAAAA
TATTAGACtcttaaaattcattttgaaattaccATTGATTTAGTATTAGC
ACATTCGTTTGTTAGTAATTATTATTTTCCTTAATTTTAGTGTCTTGCAG
TGTCTTGGTTGAAAAgctggaaaatttttcaaattctttttcaaaatttt
atcccccaattgaaattttttttgtgtttgtaCTCTCTGCTGTCTCTATT
CTCATTATCTttacaaatgaaaaaatgaaacaaaaaacttCTGAAAAACT
GAAGGAATTCTCCCCCTTTGCCTCCCCCTGGATTTTCGCAAACAATATCT
CACTTCGTTTCCAAGGGTAATATGTTGATGAACTTATTAACCTTTTTAAT
ATAAAAGCAAGGGGTATTTTGAAGTATTGAAGGTGTAAAACTGtaaatta
taaaatttgttatttttaggTATCCAGTATCAGTTACCTTAGGTAAACAG
TTTTTCATTTAGATTGATTTTGGGATCTAGACAAGAACAGAATTTTGTCA
GAGATTATTATGTTAGTGTAAAACTTtagtgttttattttgttttgttag
cAAATAAGCAGATCACCCATGTGGGAAAAGTGTATTTCACACCTTGGAAT
CGTTCACGTTCCAAGTTGTGAAgtaaactaagcactttttctTGTGTTAG
TCTCTTTTGTATATactaatattttctttttttcagagcTTTGTTTCCTG
AAAATGCTTTTGGTGATCGATGTCTAGAAGGTAAATAAAAACTTGAATTA
TTGCGTACTTTCCTCACTATCATTCAcatcttttctttatttttattgat
ttaacCCAGTTTTTAACCATACCAAAGTTTTGTCAAATGAAAGTCACCGT
AAATTTCTCCGTTCCTTTCTCAGATAATATTCTTTTTTAccaactaactt
ttttttagatGTGAATTTGAAGATTTTACGGGATGATAATAATTGTCCTG
AAGCATGCAGGGTAATTCAGTGGTAAATATTCATTATATTTTAAATCGTG
AAATAGCTTCAGGATATTTCAAGGGCCCAATTTTCACTGTTTTGTGTTCT
ATCACTAAATCACTTGAAATCCCTAAGAAAATTAAAGGATTTAGGGTGTC
AACTGAGGTATTTCATAACTTATAATAGTGAGAACAATTTCAACTAACAA
ATTTCAAAACGTTTTGAATTACTCAAATCGCTTTCTTTTACTTCTAGTTA
CATTATACACAATATCTAGGTCTTGTTCACGTCTATTTCAGGATAAGAGG
TTGTTTTGATGCCTTGGAAAAGAAATATGTAAGTCCTTTTAATGAATGgt
tatttaatataattttgataatcaaatcaaaaacttaattttacaTTAAT
TCTTTAGTCAtctcttttaacattttttccttttattttagtTGAGGGCT
GTACTGGTTGGTGTAAGTAAATTTAGTTTTGTTACCACTCATTTATTTTG
TCTTTACCATCGTATATTTCTTTATTCTCTACGCttcaaagaaagaaaga
acTAATTCATCATTTTTAATCTCAATTTAACTTTCTTGTCAATTACCTTT
AGATTTACGAGGATCCAGAGGACCCAGATGTAAGTCATTGACATTGTCAT
GCTCATCAAGAACTTTCTTTCACTcctattttcatttcaaaatttgaatt
tgccaAGTATCACTAAACTATTACTAAATTTTGTGGACGGTTAACATCTA
CTTTtgtgaaaaagttatttttctccTAGGTACTTTTACAGGTTGTCTGT
GAAAATCTCCTTGAAGACACCCCCAAACAACTAAAAACCAGTTCATTGAA
ATGTCATTcattttcttctattttcagACTGTTATTGAGCAGTATACATT
TAAGGTGAGAATTCACTTGCAACATTGTAGAGTGCAATAACACTTTTTCA
AACATGCTGTTACTCTTATATCTTTCAAAATGTAGATTAGTGCCATATTT
TTTATCCCAAGAGATAGAGAGATGAGGtgaaattttatctcattttcaaa
gatttataTAATATGGGCATTCACTTGTGTGTGGAAAGTCAGCATGTGTT
TATTAAACTAGTTATTCGTTTTCTCCCACTCAATAGTTTGCCTATGGGGA
TGGTAATGGAATTGACATTTACAGGTTGGTACTTTTATCCCTTATAGTTA
TAGCAACTTTATACATCTTGTTGATTTGGGGGAAAATTatgtatttttgt
ttgattaATTGTAACTAATCCTTCTGATTGTAGTTTGATACAAGCaatca
aacaacaacaaattccAATTTTTCCTAAGTTAGATTGAATTTTATGTTTC
TTAACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACC
AAGAAGGCAACTGTTCGTCTTCTCAGGTACCCAATTTTGATAGAAGTTGT
AGTTTTACAACTGTTTGTTTTTAAACTAAGCTGTTTTAGCTTGCAACTTG
GAGTTTGAGTGTTTGGAACATCGGATAATACATAGATaaagttgatattt
tatgtGGATAGCACTTGGACTTTAGGTAGCTTGTTTTTCACAAAGACTGT
CAGCCAGTTCAACTACTAGTATCTTTGAACTGGACAGAACATGTGTAAAA
ACAATGATTGTTCAATATTTCTATGTAAATATAACTAAAATCTGAAtcct
gtatttttttaggacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCTTC
CTGGTATGTATTTCCTCCATTGATAAGTTTCTGTGTCTTAATTTATGAAA
TCTACATGAAAGACTTATAAATTAACTGTAAATCATTGGTTCGTTTGACT
GTTCATCAGCTTTTATCAACTGTTATCAGCTTTTCATGGATTTTCCTTAT
TTCTGTTTTTTAAGACTTTGTTAATAGGTCTATAGTATATTCTGGTCGAG
TACAAgaatacaaaatagcaatgtaTTGATTGGTCTAATCAGCATTTAGC
TTAAATTGGCACGAAATATTAGTTATGTGCAGAATCTATaaatgtttatt
aatttttagatGATGTTATGATGACAATGAAACTGGTCTATTATGATGAA
AGTAAaactatttatttatttttctttggttgatTATAATTAATATGTGT
GTGCATTAGTTGGGAAAAAACCTTAAAGATATGAATCTATTGTCATGAAG
TTCTTTCACAAAGTCATTCATTTCTATTCGTTGTGCACTTAATgtgatca
aattttttttaattagaatttGATTTCTTCCGAACAATCTTTCGAAATTT
TGTTATTTCTACTCTCTAGTCACACCCGAAGATTACAACCCACCTGGCTT
CAAGGTAAAAATTCAGCTAAGATTTAGTAAAAAATTACAGAAGTACATAC
TCTAATGATAAACATCTCTTTCTATTGCTTTCTATCCGGCTTACTACCCT
GAAACATAATATTTCTCTATATTTTGATCACTAGGAGTGTGCCACAGATG
AGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGAGATGTTGCC
ACAGTA

Coding sequence (CDS) from alignment at sc0000048:561117..566372+

>TCONS_00004762 ID=TCONS_00004762|Name=TCONS_00004762|organism=Clytia hemisphaerica|type=CDS|length=10608bp|location=Sequence derived from alignment at sc0000048:561117..566372+ (Clytia hemisphaerica)
ATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGTGGTC
CTCAATCTTTCCAAATGAACAAGTAACGGAAACCCAATCAACACTGTTTG
TGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAGagcT
TTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatGTGAATTT
GAAGATTTTACGGGATGATAATAATTGTCCTGAAGCATGCAGGGTAATTC
AGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAGGGCT
GTACTGGTTGGTATTTACGAGGATCCAGAGGACCCAGATACTGTTATTGA
GCAGTATACATTTAAGTTTGCCTATGGGGATGGTAATGGAATTGACATTT
ACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACCAAG
AAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGACGCT
TAGTCCTCTTCCTGatGATGTTATGATGACAATGAAACTGGTCTATTATG
ATGAAATCACACCCGAAGATTACAACCCACCTGGCTTCAAGGAGTGTGCC
ACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGAGA
TGTTGCCACAGTAATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGC
AAGGACAGTGGTCCTCAATCTTTCCAAATGAACAAGTAACGGAAACCCAA
TCAACACTGTTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATCAG
TTACCTTAGagcTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCTAG
AAGatGTGAATTTGAAGATTTTACGGGATGATAATAATTGTCCTGAAGCA
TGCAGGGTAATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAGAA
ATATtTGAGGGCTGTACTGGTTGGTATTTACGAGGATCCAGAGGACCCAG
ATACTGTTATTGAGCAGTATACATTTAAGTTTGCCTATGGGGATGGTAAT
GGAATTGACATTTACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGA
CAAAGAAACCAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTTTT
TAAGTCAGACGCTTAGTCCTCTTCCTGatGATGTTATGATGACAATGAAA
CTGGTCTATTATGATGAAATCACACCCGAAGATTACAACCCACCTGGCTT
CAAGGAGTGTGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAATA
TCAAAGTTGGAGATGTTGCCACAGTAATGGCAACAGCACAACAAGTTCGG
TCTCAAACTAAGCAAGGACAGTGGTCCTCAATCTTTCCAAATGAACAAGT
AACGGAAACCCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTTGCAg
TATCCAGTATCAGTTACCTTAGagcTTTGTTTCCTGAAAATGCTTTTGGT
GATCGATGTCTAGAAGatGTGAATTTGAAGATTTTACGGGATGATAATAA
TTGTCCTGAAGCATGCAGGGTAATTCAGTGGATAAGAGGTTGTTTTGATG
CCTTGGAAAAGAAATATtTGAGGGCTGTACTGGTTGGTATTTACGAGGAT
CCAGAGGACCCAGATACTGTTATTGAGCAGTATACATTTAAGTTTGCCTA
TGGGGATGGTAATGGAATTGACATTTACAGAAATGGAGCTAAAATTTCAT
CAGCCAAGTCAGACAAAGAAACCAAGAAGGCAACTGTTCGTCTTCTCAGg
acaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCTTCCTGatGATGTTAT
GATGACAATGAAACTGGTCTATTATGATGAAATCACACCCGAAGATTACA
ACCCACCTGGCTTCAAGGAGTGTGCCACAGATGAGTTCGCCTTCAAAGAG
GAACCTATGAATATCAAAGTTGGAGATGTTGCCACAGTAATGGCAACAGC
ACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGTGGTCCTCAATCTTTC
CAAATGAACAAGTAACGGAAACCCAATCAACACTGTTTGTGAAGAAGTTG
CTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAGagcTTTGTTTCCTGA
AAATGCTTTTGGTGATCGATGTCTAGAAGatGTGAATTTGAAGATTTTAC
GGGATGATAATAATTGTCCTGAAGCATGCAGGGTAATTCAGTGGATAAGA
GGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAGGGCTGTACTGGTTGG
TATTTACGAGGATCCAGAGGACCCAGATACTGTTATTGAGCAGTATACAT
TTAAGTTTGCCTATGGGGATGGTAATGGAATTGACATTTACAGAAATGGA
GCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACCAAGAAGGCAACTGT
TCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCTTC
CTGatGATGTTATGATGACAATGAAACTGGTCTATTATGATGAAATCACA
CCCGAAGATTACAACCCACCTGGCTTCAAGGAGTGTGCCACAGATGAGTT
CGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGAGATGTTGCCACAG
TAATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGTGG
TCCTCAATCTTTCCAAATGAACAAGTAACGGAAACCCAATCAACACTGTT
TGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAGag
cTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatGTGAAT
TTGAAGATTTTACGGGATGATAATAATTGTCCTGAAGCATGCAGGGTAAT
TCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAGGG
CTGTACTGGTTGGTATTTACGAGGATCCAGAGGACCCAGATACTGTTATT
GAGCAGTATACATTTAAGTTTGCCTATGGGGATGGTAATGGAATTGACAT
TTACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACCA
AGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGACG
CTTAGTCCTCTTCCTGatGATGTTATGATGACAATGAAACTGGTCTATTA
TGATGAAATCACACCCGAAGATTACAACCCACCTGGCTTCAAGGAGTGTG
CCACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGA
GATGTTGCCACAGTAATGGCAACAGCACAACAAGTTCGGTCTCAAACTAA
GCAAGGACAGTGGTCCTCAATCTTTCCAAATGAACAAGTAACGGAAACCC
AATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATC
AGTTACCTTAGagcTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCT
AGAAGatGTGAATTTGAAGATTTTACGGGATGATAATAATTGTCCTGAAG
CATGCAGGGTAATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAG
AAATATtTGAGGGCTGTACTGGTTGGTATTTACGAGGATCCAGAGGACCC
AGATACTGTTATTGAGCAGTATACATTTAAGTTTGCCTATGGGGATGGTA
ATGGAATTGACATTTACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCA
GACAAAGAAACCAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTT
TTTAAGTCAGACGCTTAGTCCTCTTCCTGatGATGTTATGATGACAATGA
AACTGGTCTATTATGATGAAATCACACCCGAAGATTACAACCCACCTGGC
TTCAAGGAGTGTGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAA
TATCAAAGTTGGAGATGTTGCCACAGTAATGGCAACAGCACAACAAGTTC
GGTCTCAAACTAAGCAAGGACAGTGGTCCTCAATCTTTCCAAATGAACAA
GTAACGGAAACCCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTTGC
AgTATCCAGTATCAGTTACCTTAGagcTTTGTTTCCTGAAAATGCTTTTG
GTGATCGATGTCTAGAAGatGTGAATTTGAAGATTTTACGGGATGATAAT
AATTGTCCTGAAGCATGCAGGGTAATTCAGTGGATAAGAGGTTGTTTTGA
TGCCTTGGAAAAGAAATATtTGAGGGCTGTACTGGTTGGTATTTACGAGG
ATCCAGAGGACCCAGATACTGTTATTGAGCAGTATACATTTAAGTTTGCC
TATGGGGATGGTAATGGAATTGACATTTACAGAAATGGAGCTAAAATTTC
ATCAGCCAAGTCAGACAAAGAAACCAAGAAGGCAACTGTTCGTCTTCTCA
GgacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCTTCCTGatGATGTT
ATGATGACAATGAAACTGGTCTATTATGATGAAATCACACCCGAAGATTA
CAACCCACCTGGCTTCAAGGAGTGTGCCACAGATGAGTTCGCCTTCAAAG
AGGAACCTATGAATATCAAAGTTGGAGATGTTGCCACAGTAATGGCAACA
GCACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGTGGTCCTCAATCTT
TCCAAATGAACAAGTAACGGAAACCCAATCAACACTGTTTGTGAAGAAGT
TGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAGagcTTTGTTTCCT
GAAAATGCTTTTGGTGATCGATGTCTAGAAGatGTGAATTTGAAGATTTT
ACGGGATGATAATAATTGTCCTGAAGCATGCAGGGTAATTCAGTGGATAA
GAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAGGGCTGTACTGGTT
GGTATTTACGAGGATCCAGAGGACCCAGATACTGTTATTGAGCAGTATAC
ATTTAAGTTTGCCTATGGGGATGGTAATGGAATTGACATTTACAGAAATG
GAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACCAAGAAGGCAACT
GTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCT
TCCTGatGATGTTATGATGACAATGAAACTGGTCTATTATGATGAAATCA
CACCCGAAGATTACAACCCACCTGGCTTCAAGGAGTGTGCCACAGATGAG
TTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGAGATGTTGCCAC
AGTAATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGT
GGTCCTCAATCTTTCCAAATGAACAAGTAACGGAAACCCAATCAACACTG
TTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAG
agcTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatGTGA
ATTTGAAGATTTTACGGGATGATAATAATTGTCCTGAAGCATGCAGGGTA
ATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAG
GGCTGTACTGGTTGGTATTTACGAGGATCCAGAGGACCCAGATACTGTTA
TTGAGCAGTATACATTTAAGTTTGCCTATGGGGATGGTAATGGAATTGAC
ATTTACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAAC
CAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGA
CGCTTAGTCCTCTTCCTGatGATGTTATGATGACAATGAAACTGGTCTAT
TATGATGAAATCACACCCGAAGATTACAACCCACCTGGCTTCAAGGAGTG
TGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTG
GAGATGTTGCCACAGTAATGGCAACAGCACAACAAGTTCGGTCTCAAACT
AAGCAAGGACAGTGGTCCTCAATCTTTCCAAATGAACAAGTAACGGAAAC
CCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTA
TCAGTTACCTTAGagcTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGT
CTAGAAGatGTGAATTTGAAGATTTTACGGGATGATAATAATTGTCCTGA
AGCATGCAGGGTAATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAA
AGAAATATtTGAGGGCTGTACTGGTTGGTATTTACGAGGATCCAGAGGAC
CCAGATACTGTTATTGAGCAGTATACATTTAAGTTTGCCTATGGGGATGG
TAATGGAATTGACATTTACAGAAATGGAGCTAAAATTTCATCAGCCAAGT
CAGACAAAGAAACCAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTG
TTTTTAAGTCAGACGCTTAGTCCTCTTCCTGatGATGTTATGATGACAAT
GAAACTGGTCTATTATGATGAAATCACACCCGAAGATTACAACCCACCTG
GCTTCAAGGAGTGTGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTATG
AATATCAAAGTTGGAGATGTTGCCACAGTAATGGCAACAGCACAACAAGT
TCGGTCTCAAACTAAGCAAGGACAGTGGTCCTCAATCTTTCCAAATGAAC
AAGTAACGGAAACCCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTT
GCAgTATCCAGTATCAGTTACCTTAGagcTTTGTTTCCTGAAAATGCTTT
TGGTGATCGATGTCTAGAAGatGTGAATTTGAAGATTTTACGGGATGATA
ATAATTGTCCTGAAGCATGCAGGGTAATTCAGTGGATAAGAGGTTGTTTT
GATGCCTTGGAAAAGAAATATtTGAGGGCTGTACTGGTTGGTATTTACGA
GGATCCAGAGGACCCAGATACTGTTATTGAGCAGTATACATTTAAGTTTG
CCTATGGGGATGGTAATGGAATTGACATTTACAGAAATGGAGCTAAAATT
TCATCAGCCAAGTCAGACAAAGAAACCAAGAAGGCAACTGTTCGTCTTCT
CAGgacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCTTCCTGatGATG
TTATGATGACAATGAAACTGGTCTATTATGATGAAATCACACCCGAAGAT
TACAACCCACCTGGCTTCAAGGAGTGTGCCACAGATGAGTTCGCCTTCAA
AGAGGAACCTATGAATATCAAAGTTGGAGATGTTGCCACAGTAATGGCAA
CAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGTGGTCCTCAATC
TTTCCAAATGAACAAGTAACGGAAACCCAATCAACACTGTTTGTGAAGAA
GTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAGagcTTTGTTTC
CTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatGTGAATTTGAAGATT
TTACGGGATGATAATAATTGTCCTGAAGCATGCAGGGTAATTCAGTGGAT
AAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAGGGCTGTACTGG
TTGGTATTTACGAGGATCCAGAGGACCCAGATACTGTTATTGAGCAGTAT
ACATTTAAGTTTGCCTATGGGGATGGTAATGGAATTGACATTTACAGAAA
TGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACCAAGAAGGCAA
CTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCT
CTTCCTGatGATGTTATGATGACAATGAAACTGGTCTATTATGATGAAAT
CACACCCGAAGATTACAACCCACCTGGCTTCAAGGAGTGTGCCACAGATG
AGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGAGATGTTGCC
ACAGTAATGGCAACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGACA
GTGGTCCTCAATCTTTCCAAATGAACAAGTAACGGAAACCCAATCAACAC
TGTTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTT
AGagcTTTGTTTCCTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatGT
GAATTTGAAGATTTTACGGGATGATAATAATTGTCCTGAAGCATGCAGGG
TAATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTG
AGGGCTGTACTGGTTGGTATTTACGAGGATCCAGAGGACCCAGATACTGT
TATTGAGCAGTATACATTTAAGTTTGCCTATGGGGATGGTAATGGAATTG
ACATTTACAGAAATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAA
ACCAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCA
GACGCTTAGTCCTCTTCCTGatGATGTTATGATGACAATGAAACTGGTCT
ATTATGATGAAATCACACCCGAAGATTACAACCCACCTGGCTTCAAGGAG
TGTGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGT
TGGAGATGTTGCCACAGTAATGGCAACAGCACAACAAGTTCGGTCTCAAA
CTAAGCAAGGACAGTGGTCCTCAATCTTTCCAAATGAACAAGTAACGGAA
ACCCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCGTTGCAgTATCCAG
TATCAGTTACCTTAGagcTTTGTTTCCTGAAAATGCTTTTGGTGATCGAT
GTCTAGAAGatGTGAATTTGAAGATTTTACGGGATGATAATAATTGTCCT
GAAGCATGCAGGGTAATTCAGTGGATAAGAGGTTGTTTTGATGCCTTGGA
AAAGAAATATtTGAGGGCTGTACTGGTTGGTATTTACGAGGATCCAGAGG
ACCCAGATACTGTTATTGAGCAGTATACATTTAAGTTTGCCTATGGGGAT
GGTAATGGAATTGACATTTACAGAAATGGAGCTAAAATTTCATCAGCCAA
GTCAGACAAAGAAACCAAGAAGGCAACTGTTCGTCTTCTCAGgacaaTTG
TGTTTTTAAGTCAGACGCTTAGTCCTCTTCCTGatGATGTTATGATGACA
ATGAAACTGGTCTATTATGATGAAATCACACCCGAAGATTACAACCCACC
TGGCTTCAAGGAGTGTGCCACAGATGAGTTCGCCTTCAAAGAGGAACCTA
TGAATATCAAAGTTGGAGATGTTGCCACAGTAATGGCAACAGCACAACAA
GTTCGGTCTCAAACTAAGCAAGGACAGTGGTCCTCAATCTTTCCAAATGA
ACAAGTAACGGAAACCCAATCAACACTGTTTGTGAAGAAGTTGCTTGCCG
TTGCAgTATCCAGTATCAGTTACCTTAGagcTTTGTTTCCTGAAAATGCT
TTTGGTGATCGATGTCTAGAAGatGTGAATTTGAAGATTTTACGGGATGA
TAATAATTGTCCTGAAGCATGCAGGGTAATTCAGTGGATAAGAGGTTGTT
TTGATGCCTTGGAAAAGAAATATtTGAGGGCTGTACTGGTTGGTATTTAC
GAGGATCCAGAGGACCCAGATACTGTTATTGAGCAGTATACATTTAAGTT
TGCCTATGGGGATGGTAATGGAATTGACATTTACAGAAATGGAGCTAAAA
TTTCATCAGCCAAGTCAGACAAAGAAACCAAGAAGGCAACTGTTCGTCTT
CTCAGgacaaTTGTGTTTTTAAGTCAGACGCTTAGTCCTCTTCCTGatGA
TGTTATGATGACAATGAAACTGGTCTATTATGATGAAATCACACCCGAAG
ATTACAACCCACCTGGCTTCAAGGAGTGTGCCACAGATGAGTTCGCCTTC
AAAGAGGAACCTATGAATATCAAAGTTGGAGATGTTGCCACAGTAATGGC
AACAGCACAACAAGTTCGGTCTCAAACTAAGCAAGGACAGTGGTCCTCAA
TCTTTCCAAATGAACAAGTAACGGAAACCCAATCAACACTGTTTGTGAAG
AAGTTGCTTGCCGTTGCAgTATCCAGTATCAGTTACCTTAGagcTTTGTT
TCCTGAAAATGCTTTTGGTGATCGATGTCTAGAAGatGTGAATTTGAAGA
TTTTACGGGATGATAATAATTGTCCTGAAGCATGCAGGGTAATTCAGTGG
ATAAGAGGTTGTTTTGATGCCTTGGAAAAGAAATATtTGAGGGCTGTACT
GGTTGGTATTTACGAGGATCCAGAGGACCCAGATACTGTTATTGAGCAGT
ATACATTTAAGTTTGCCTATGGGGATGGTAATGGAATTGACATTTACAGA
AATGGAGCTAAAATTTCATCAGCCAAGTCAGACAAAGAAACCAAGAAGGC
AACTGTTCGTCTTCTCAGgacaaTTGTGTTTTTAAGTCAGACGCTTAGTC
CTCTTCCTGatGATGTTATGATGACAATGAAACTGGTCTATTATGATGAA
ATCACACCCGAAGATTACAACCCACCTGGCTTCAAGGAGTGTGCCACAGA
TGAGTTCGCCTTCAAAGAGGAACCTATGAATATCAAAGTTGGAGATGTTG
CCACAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002695XLOC_002695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004762-exon-sc0000048-1491911889:561117..561218TCONS_00004762-exon-sc0000048-1491911889:561117..561218Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:561117..561218TCONS_00004762-exon-sc0000048-1510915933:561117..561218Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:561117..561218TCONS_00004762-exon-sc0000048-1575043694:561117..561218Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:561964..561997TCONS_00004762-exon-sc0000048-1491911889:561964..561997Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:561964..561997TCONS_00004762-exon-sc0000048-1510915933:561964..561997Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:561964..561997TCONS_00004762-exon-sc0000048-1575043694:561964..561997Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:562776..562819TCONS_00004762-exon-sc0000048-1491911889:562776..562819Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:562776..562819TCONS_00004762-exon-sc0000048-1510915933:562776..562819Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:562776..562819TCONS_00004762-exon-sc0000048-1575043694:562776..562819Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:563286..563308TCONS_00004762-exon-sc0000048-1491911889:563286..563308Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:563286..563308TCONS_00004762-exon-sc0000048-1510915933:563286..563308Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:563286..563308TCONS_00004762-exon-sc0000048-1575043694:563286..563308Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:563553..563596TCONS_00004762-exon-sc0000048-1491911889:563553..563596Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:563553..563596TCONS_00004762-exon-sc0000048-1510915933:563553..563596Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:563553..563596TCONS_00004762-exon-sc0000048-1575043694:563553..563596Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:563775..563838TCONS_00004762-exon-sc0000048-1491911889:563775..563838Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:563775..563838TCONS_00004762-exon-sc0000048-1510915933:563775..563838Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:563775..563838TCONS_00004762-exon-sc0000048-1575043694:563775..563838Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:564108..564144TCONS_00004762-exon-sc0000048-1491911889:564108..564144Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:564108..564144TCONS_00004762-exon-sc0000048-1510915933:564108..564144Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:564108..564144TCONS_00004762-exon-sc0000048-1575043694:564108..564144Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:564258..564278TCONS_00004762-exon-sc0000048-1491911889:564258..564278Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:564258..564278TCONS_00004762-exon-sc0000048-1510915933:564258..564278Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:564258..564278TCONS_00004762-exon-sc0000048-1575043694:564258..564278Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:564419..564445TCONS_00004762-exon-sc0000048-1491911889:564419..564445Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:564419..564445TCONS_00004762-exon-sc0000048-1510915933:564419..564445Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:564419..564445TCONS_00004762-exon-sc0000048-1575043694:564419..564445Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:564694..564720TCONS_00004762-exon-sc0000048-1491911889:564694..564720Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:564694..564720TCONS_00004762-exon-sc0000048-1510915933:564694..564720Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:564694..564720TCONS_00004762-exon-sc0000048-1575043694:564694..564720Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:564953..564990TCONS_00004762-exon-sc0000048-1491911889:564953..564990Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:564953..564990TCONS_00004762-exon-sc0000048-1510915933:564953..564990Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:564953..564990TCONS_00004762-exon-sc0000048-1575043694:564953..564990Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:565174..565242TCONS_00004762-exon-sc0000048-1491911889:565174..565242Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:565174..565242TCONS_00004762-exon-sc0000048-1510915933:565174..565242Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:565174..565242TCONS_00004762-exon-sc0000048-1575043694:565174..565242Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:565529..565569TCONS_00004762-exon-sc0000048-1491911889:565529..565569Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:565529..565569TCONS_00004762-exon-sc0000048-1510915933:565529..565569Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:565529..565569TCONS_00004762-exon-sc0000048-1575043694:565529..565569Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:565876..565917TCONS_00004762-exon-sc0000048-1491911889:565876..565917Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:565876..565917TCONS_00004762-exon-sc0000048-1510915933:565876..565917Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:565876..565917TCONS_00004762-exon-sc0000048-1575043694:565876..565917Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:566136..566170TCONS_00004762-exon-sc0000048-1491911889:566136..566170Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:566136..566170TCONS_00004762-exon-sc0000048-1510915933:566136..566170Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:566136..566170TCONS_00004762-exon-sc0000048-1575043694:566136..566170Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1491911889:566301..566372TCONS_00004762-exon-sc0000048-1491911889:566301..566372Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1510915933:566301..566372TCONS_00004762-exon-sc0000048-1510915933:566301..566372Clytia hemisphaericaexon
TCONS_00004762-exon-sc0000048-1575043694:566301..566372TCONS_00004762-exon-sc0000048-1575043694:566301..566372Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004762-proteinTCONS_00004762-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:561117..566372 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29113	2.0988	1.96525	1.38434	0.280883	0.369929	1.51743	2.50694	2.10621	1.81172	1.19578	2.77432	0.554093	0.767242	0.433659	0.930765	0.677552	1.22868	0.147607	0.0772301	1.87956	1.57163	1.83091	1.51982	72.7528	75.5745	0.380799	0.203199	0.770597	0.863629
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003511HORMA_dom
Blast
[Close]
BLAST of TCONS_00004762 vs. Swiss-Prot (Human)
Match: HORM1 (HORMA domain-containing protein 1 OS=Homo sapiens GN=HORMAD1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.576e-69
Identity = 108/221 (48.87%), Postives = 151/221 (68.33%), Query Frame = 1 
Query:   58 MATAQQVRSQTKQGQWSSIFPNEQVTETQSTLFVKKLLAVAVSSISYLRALFPENAFGDRCLEDVNLKILRDDNNCPEACRVIQWIRGCFDALEKKYLRAVLVGIYEDPEDPDTVIEQYTFKFAY-GDGNGIDIYRNGAKISSAKSDKETKKATVRLLRTIVFLSQTLSPLPDDVMMTMKLVYYDEITPEDYNPPGFKECATDEFAFKEEPMNIKVGDVAT 717
            MATAQ  R+       + +FPN+  TE QS + VK+LLAV+VS I+YLR +FPE A+G R L+D+ +KILR+D NCP + ++++W+ GC+DAL+KKYLR V++ +Y +PEDP T+ E Y FKF Y  +G  +D         S+    +TKKA++ L+R I  L Q L PLP+DV +TMKL YYDE+TP DY PPGFK+   +   F+ EPM + VG+V+T
Sbjct:    1 MATAQLQRTPMS----ALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTNNGPLMDFISKNQSNESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVST 217
The following BLAST results are available for this feature:
BLAST of TCONS_00004762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HORM13.576e-6948.87HORMA domain-containing protein 1 OS=Homo sapiens ... [more]
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