|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004773 ID=TCONS_00004773|Name=TCONS_00004773|organism=Clytia hemisphaerica|type=transcript|length=2233bp
ACACTCGTTGTAGCTTTGAAACAGGCCGTACATGAACCAGAAGATGTCAC
TGGGTTCCAATGAAGCTAAGGAGGCAGTTGCAACACTTCGTGATCGTTTG
AAACATGGGCAAAACATGACCAAGATATTGGAATCACAACTGGATACAGC
GCAACAGAATATAAGTTTATTGCAAGGGCAAGTGCGTTTAGCCAACGAAA
CCATTTTGAACTTGAAGAAATATTTCACCGAAACGGAGAACACTTTGAAT
GATTTGTTTACATCGAATCATTCCTCAAGAAGTTTTCAATACAATGATGG
TGCTACAAAGGAGCAATCAGATATggataaaaatcaacaaatgtCGAAAG
TTGCTCGAGGTTCTACTAGATCACCAAGAACACCAGAGTCGATGGATACT
AAGACACACCATGACGACAAACGCAGGGAGCGTGAGCACAACAACAAATC
ACCATACGCACAACAATTACGTCAAGTTCTGGATGCTCTACAAGACGAAG
AGCCGAAGAAATCTTCACACACTCATCATCGTTTACACGAGAAAACAGAA
CCTTCAGAACACAGTCCATCACCTCCGCCTGCAGACCGTCGTTTGATGCA
GGCTACAAAACATTATCACCATGAGAATGAAGGTGGTGCCTTTCAAAGAC
GACAACCTCATCCAGAAGAGGACTATCCAAAGATGAAACACCATAAAATG
AACGGTCATCCTTCAAGAGAATCAACCAATGGGAACCATCATGACCCAAT
CTCCCCTAAACCATCCTATTATCAACAACACCATTCTAATGAGTTGTCAC
ACGGTCATCATCAGCCACATCCTCATAGCAACCATTGCATGGGACCATGT
TGTCCCAGCGAAACGCCACCATCAAGCTACAAAATGATGGAGAAATCATA
TCATTATGGTTCAGATGAAAAACCGACACACTATGTGGAGAAATCACCAA
ATGGAGGTGTTCACTATattgctgtacattcaccagagaGCACTACCAGC
TCTGGCAAACATGGCGAAAGACATCATAGTCATCATTATGTTCCTTATGC
TTACCACATCCCTGGTGAGAATCCACATAAAATGATACACGAAATGCCAC
CGCAACCACTTTCACCGACAACCAACAGTGGTGGTGGGCGCCGAAAGAGG
GCGTACGCCCCATTGTTACCAAATGAAGAACCACCACATTTGAAATACAC
CAAAGTGAAGCGAATCGATGGTAGCAAGTTGACAGCACAAAAAGTCCTCC
AAGATTTCACAAAGAGGCGATTCATTGCTTATAATCCACGATACGATTTG
GACTTATTAATTGTTCCTCCGCCCATCCCTGCATCAGACCTCCTCAAGGG
CGGTCATCAATTCAAAGGAACTGAACAAAAAATGACCAACATTCGATCTC
CAGTAGCCTCACcacaagaaaacaaaattcaaagcGAACGTCGATCAACA
ATTTACGGAAAACCATCCAATGAGAGTCACTCCGATAAAGAGGACGAGGA
AGTTTTTACGGAACCGAGAAGTCCTCTTGATGACGCAAACAATAATAATC
ACCATGACGataacaacaacaataacaaaactGTAAATAATAATTCATGG
CCGCACAAGCCACAAATATATTCAGGGAAAGGTGTCTCTGTGTTACCAAG
CATCAAAGAGGAGCCGAGGAGCAATAAATTGGAAGATCAGATTAATAAGT
TGAGACATGATCAAGAAGCGAATACGATTCCAGCCGTCTACCGACAACAA
GACAGTCCTTACAGTGATACCAACAATAATAACGAAAACAGTCCCATGGT
GGTCAGAGAGAATGCAGCTTCGCCGATTCCTATTGTTAGACGTACCGAAC
AGTATTGCAGTTAGAAATGCGtttccattttttccatttctaaaaactaa
aaattttgaatttgtagTGAGTTTAGCGCGTCTTTATGTTAAATTTTGTA
ATCCTTAGGCTCGAAGTGGAGGTGTATTTACTTTACAGAGCAGAAGATAG
ATTAATCTTTGTATCAATGGTGATTTTTTTGTCACGTTGTCTTGTTGCAT
TTGGAGATTGGATTATAAAGCCAGTTGCTTTTGTTATTGTATATCCTCAT
TAAAAAAcgtaaatttttgaaactttgttgatatttttcctCTTCTTTTT
GTATAGTTTACTAGATAGatataattttgaaagtttttggatGATTAGAC
aactttgaaaatattgataaataaataattcat Run BLAST on NCBI transcript from alignment at sc0000048:126098..129031- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004773 ID=TCONS_00004773|Name=TCONS_00004773|organism=Clytia hemisphaerica|type=transcript|length=2934bp|location=Sequence derived from alignment at sc0000048:126098..129031- (Clytia hemisphaerica)
ACACTCGTTGTAGCTTTGAAACAGGCCGTACATGAACCAGTGAGTATGTC
TACGTCGCTATATAGACATTCAATTTCTTCGCATATTGAACCAAGTGTTA
ATGAAATCGAAGAATAGTCAATCATGTGATTAGTTAATTCAAACTCCATT
CAGCTCCATACTACTTACAAAACAATTCATACATTTGTCGTAAACATAAA
ATTACAGCTTATCAAAACTTCAATTTTCTCACCGCACATATTCTGAGTTT
ATCCAAACCTTACATCGATATTTATCTAAAATACCAGCTGATCTTACAAA
GGTTGTAAAGGCTTCAATTTAATAAGGCTCTCTAAACTGCAAAATTTAAT
GAAGCCTCTAAAAGTGCCATTATAAGAATTGACAAACGAACAAAATAACT
AAATTGAAGCTATTTTTTGTCCTTTCATAGGAAGATGTCACTGGGTTCCA
ATGAAGCTAAGGAGGCAGTTGCAACACTTCGTGATCGTTTGAAACATGGG
CAAAACATGACCAAGATATTGGAATCACAACTGGATACAGCGCAACAGAA
TATAAGTTTATTGCAAGGGCAAGTGCGTTTAGCCAACGAAACCATTTTGA
ACTTGAAGAAATATTTCACCGAAACGGAGAACACTTTGAATGATTTGTTT
ACATCGAATCATTCCTCAAGAAGTTTTCAATACAATGATGGTGCTACAAA
GGAGCAATCAGATATGGATAAAAATCAACAAATGTCGAAAGTTGCTCGAG
GTTCTACTAGATCACCAAGAACACCAGAGTCGATGGATACTAAGACACAC
CATGACGACAAACGCAGGGAGCGTGAGCACAACAACAAATCACCATACGC
ACAACAATTACGTCAAGTTCTGGATGCTCTACAAGACGAAGAGCCGAAGA
AATCTTCACACACTCATCATCGTTTACACGAGAAAACAGAACCTTCAGAA
CACAGTCCATCACCTCCGCCTGCAGACCGTCGTTTGATGCAGGCTACAAA
ACATTATCACCATGAGAATGAAGGTGGTGCCTTTCAAAGACGACAACCTC
ATCCAGAAGAGGACTATCCAAAGATGAAACACCATAAAATGAACGGTCAT
CCTTCAAGAGAATCAACCAATGGGAACCATCATGACCCAATCTCCCCTAA
ACCATCCTATTATCAACAACACCATTCTAATGAGTTGTCACACGGTCATC
ATCAGCCACATCCTCATAGCAACCATTGCATGGGACCATGTTGTCCCAGC
GAAACGCCACCATCAAGCTACAAAATGATGGAGAAATCATATCATTATGG
TTCAGATGAAAAACCGACACACTATGTGGAGAAATCACCAAATGGAGGTG
TTCACTATATTGCTGTACATTCACCAGAGAGCACTACCAGCTCTGGCAAA
CATGGCGAAAGACATCATAGTCATCATTATGTTCCTTATGCTTACCACAT
CCCTGGTGAGAATCCACATAAAATGATACACGAAATGCCACCGCAACCAC
TTTCACCGACAACCAACAGTGGTGGTGGGCGCCGAAAGAGGGCGTACGCC
CCATTGTTACCAAATGAAGAACCACCACATTTGAAATACACCAAAGTGAA
GCGAATCGATGGTAGCAAGTTGACAGCACAAAAAGTCCTCCAAGGTATAC
CTACTTTTCAATATTTCTTTCTTTCTCTTTTTAAACTGTTAACGATCGAA
GAAACAACAAAATACAACAATTCAAACATTCAACATCGAAGAATTGTTAT
TTCTATCCTTTCTATCCTTACTTGAAATTAAGGGACAATCTTAATTAGTA
TAAAGTTTACGTGGGGCTATTATCTGAATATTAAGATATAAAGCAACATT
TTCAAATTTAACAGTCTACTTTCAGAGTTATTTTTCAACCAGACTTGATT
TGACCAGAACATTGATACAGGAGAATATATATTTTTATTTGCTTTTTGTT
TCAGATTTCACAAAGAGGCGATTCATTGCTTATAATCCACGATACGATTT
GGACTTATTAATTGTTCCTCCGCCCATCCCTGCATCAGACCTCCTCAAGG
GCGGTCATCAATTCAAAGGAACTGAACAAAAAATGACCAACATTCGATCT
CCAGTAGCCTCACCACAAGAAAACAAAATTCAAAGCGAACGTCGATCAAC
AATTTACGGAAAACCATCCAATGAGAGTCACTCCGATAAAGAGGACGAGG
AAGTTTTTACGGAACCGAGAAGTCCTCTTGATGACGCAAACAATAATAAT
CACCATGACGATAACAACAACAATAACAAAACTGTAAATAATAATTCATG
GCCGCACAAGCCACAAATATATTCAGGGAAAGGTGTCTCTGTGTTACCAA
GCATCAAAGAGGAGCCGAGGAGCAATAAATTGGAAGATCAGATTAATAAG
TTGAGACATGATCAAGAAGCGAATACGATTCCAGCCGTCTACCGACAACA
AGACAGTCCTTACAGTGATACCAACAATAATAACGAAAACAGTCCCATGG
TGGTCAGAGAGAATGCAGCTTCGCCGATTCCTATTGTTAGACGTACCGAA
CAGTATTGCAGTTAGAAATGCGTTTCCATTTTTTCCATTTCTAAAAACTA
AAAATTTTGAATTTGTAGTGAGTTTAGCGCGTCTTTATGTTAAATTTTGT
AATCCTTAGGCTCGAAGTGGAGGTGTATTTACTTTACAGAGCAGAAGATA
GATTAATCTTTGTATCAATGGTGATTTTTTTGTCACGTTGTCTTGTTGCA
TTTGGAGATTGGATTATAAAGCCAGTTGCTTTTGTTATTGTATATCCTCA
TTAAAAAACGTAAATTTTTGAAACTTTGTTGATATTTTTCCTCTTCTTTT
TGTATAGTTTACTAGATAGATATAATTTTGAAAGTTTTTGGATGATTAGA
CAACTTTGAAAATATTGATAAATAAATAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004773-exon-sc0000048-1575043694:128993..129031 | TCONS_00004773-exon-sc0000048-1575043694:128993..129031 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1575043694:127388..128601 | TCONS_00004773-exon-sc0000048-1575043694:127388..128601 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1575043694:126098..127077 | TCONS_00004773-exon-sc0000048-1575043694:126098..127077 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1510915933:128993..129031 | TCONS_00004773-exon-sc0000048-1510915933:128993..129031 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1510915933:127388..128601 | TCONS_00004773-exon-sc0000048-1510915933:127388..128601 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1510915933:126098..127077 | TCONS_00004773-exon-sc0000048-1510915933:126098..127077 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1491911889:128993..129031 | TCONS_00004773-exon-sc0000048-1491911889:128993..129031 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1491911889:127388..128601 | TCONS_00004773-exon-sc0000048-1491911889:127388..128601 | Clytia hemisphaerica | exon |
| TCONS_00004773-exon-sc0000048-1491911889:126098..127077 | TCONS_00004773-exon-sc0000048-1491911889:126098..127077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:126098..129031 - |
Blast
The following BLAST results are available for this feature:
|
