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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004852 ID=TCONS_00004852|Name=TCONS_00004852|organism=Clytia hemisphaerica|type=transcript|length=1356bp
ctttggTTGGCTGTTTATGAACAGAGTGTTGAACAAGTGTTTTAGAAACA
TGCATTTGACATGGAAATTAAAGCGAAAGCTAACAGTATCGATTGGTATA
ATATACCGATGTCTTTATTGCTTTGAGTACTCATCGACTGCAATTTCTGC
TTTATATTactataaaaaatctttcaatgtCGAAAATCCTAAATTTTATT
ATGGATGCTCAATGGCAGCAATATTTCTCAGCGCTATTATTTCAAACTAC
ATATGTGGACGAGCAATGGATAAGACAAGAGATTTAAGGAAGATTGTATT
GACTTTATCGTTATTTAACATTATTGGTAATCTAACATATACACTGACTT
GGTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGTGTGTGGTATTGCAACT
GGAATTGGTGCTGCAGTTACAGGAGAGTTCAATCGCATTTATAAGGAGAA
GAAGGAGTTGGCACAAATGCTATCATTGAAAGCATTCATCTCGACGACGT
GTATGGCACTCGCACCATGCACACCTTTGTTTTTCTATGGCATTCATTTC
CAAATCGGTTCGTGGAGAATCAGTCAAGATAATTTCATTGGCATATTCCT
TGCTTCCATTACATCATGCATGTGGATCTTCTCTTATTTCGGGCTACACA
ATTTGACCAAAGATCCGGAAAGTCCTTTCTCTGATTTTAACAAGAATAAT
AGTAATGCAAGGATATCCAATGAGGACAAACTATGGACAACAAAGGAAAT
TGTAAAGGATAGATATCTAATGTTATTGTTGGTCGCTGAAGGGTTTCTAG
CTTTTCAATACTTTCAAATGGAGCTCGAAATCAATTTGATGGCAGTTGAA
TATTTCCATTGGCCAATGCTGCAACTTGGTTTAATCACAAGTATTGCTAT
TATTGCATCTACTGGAACTTTGTATTTGACTCAGAAGAAGCTCATGGGAT
CTGCTTTGAATATATTATTTCTCTATGTTGTTGGTTTGGTAATTATTGGA
GTTTTAGAATCCATTATTTTATTTGGTACTGTTACAAAGTTCGATAAACC
ATTGCAGCATGTAGTTATCTTCACCACCTTATTCTTCAACATCGTTCAGG
GTTTCGGATCGACAGTTTACTGTCAATGGTTGATGTTCTCCATAACTCCT
TCACATTCCTCGAGTATCATCGAATCCCATCGATATATCATCGCCAGAGC
TTTGGCGTGTTTGGCTTTTTTTACTGCCAGTTatgtttatgatattttga
agTATATAATTCCAGTCTATAGTTTAATtacttatattttaattttgtta
ttgttgtcaAATCGGTTTCACTAtgtggaaagaaaaattatcaagtGATA
AAAAAC Run BLAST on NCBI protein sequence of TCONS_00004852-protein >TCONS_00004852-protein ID=TCONS_00004852-protein|Name=TCONS_00004852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
FGWLFMNRVLNKCFRNMHLTWKLKRKLTVSIGIIYRCLYCFEYSSTAISA
LYYYKKSFNVENPKFYYGCSMAAIFLSAIISNYICGRAMDKTRDLRKIVL
TLSLFNIIGNLTYTLTWSPWLPVLGRFVCGIATGIGAAVTGEFNRIYKEK
KELAQMLSLKAFISTTCMALAPCTPLFFYGIHFQIGSWRISQDNFIGIFL
ASITSCMWIFSYFGLHNLTKDPESPFSDFNKNNSNARISNEDKLWTTKEI
VKDRYLMLLLVAEGFLAFQYFQMELEINLMAVEYFHWPMLQLGLITSIAI
IASTGTLYLTQKKLMGSALNILFLYVVGLVIIGVLESIILFGTVTKFDKP
LQHVVIFTTLFFNIVQGFGSTVYCQWLMFSITPSHSSSIIESHRYIIARA
LACLAFFTASYVYDILKYIIPVYSLITYILILLLLSNRFHYVERKIIK Run BLAST on NCBI transcript from alignment at sc0000049:212664..214916+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004852 ID=TCONS_00004852|Name=TCONS_00004852|organism=Clytia hemisphaerica|type=transcript|length=2253bp|location=Sequence derived from alignment at sc0000049:212664..214916+ (Clytia hemisphaerica)
ctttggTTGGCTGTTTATGAACAGAGTGTTGAACAAGTGTTTTAGAAACA
TGCATTTGACATGGAAATTAAAGCGAAAGCTAACAGTATCGATTGGTATA
ATATACCGATGTCTTTATTGCTTTGAGTACTCATCGACTGCAATTTCTGC
TTTATATTactataaaaaatctttcaatgtCGAAAATCCTAAATTTTATT
ATGGATGCTCAATGGCAGCAATATTTCTCAGCGCTATTATTTCAAACTAC
ATATGTGGACGAGCAATGGATAAGACAAGAGATTTAAGGAAGATTGTATT
GACTTTATCGTTATTTAACATTATTGGTAATCTAACATATACACTGACTT
GGTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGTGTGTGGTATTGCAACT
GGAATTGGTGCTGCAGTTACAGGTAAATAATTGATAACTTACAATCTGAG
GAATATgctatctcaaaatcgtaaggaccgcgttcgtctaaaaagACTGG
Ggacgacaacaaagttgcgtgattgtgtttacgaatagggcgccgtatca
gtttttaactttctggCGCACGaaaagattcttgttgtaaaattttccgc
gggaggactattttcctcagctgtatgattttcaagtgccttcagaggtt
taccgtgcacgtaagaaaataatgaacagctgttatcaggttacacCGGG
GTGGCTGtatgaaaaaactaaaatttcacTGGGTCCGATTATGATTATGG
TCCGAAAATTTCTATCATCGGGGTTAGGGTCAAAATATGCCAGAAATTTT
GCCGTCGAAAATAGTTTTAAGTGAATTTTTAACTTCTTTCTGCACCAAAA
AATAAACGACTTTATTTTTGATGGCTCCCTGAAAAATCAACGTCGGCTTG
CACCGACTGGAAAAAATCTCGAATTGATGAGAAACATGTTTTAAAAGGTA
TCAAAAACCGAATTTATAAGGTTAAAACTATGCCTCAGTTTTGGGCCGCT
TTGTGTGCGGTATTGCAGCAggaatttgagcttcagtaatAGGTTAATTT
taatggaaaattttaaaaataaaattcgctTGGCATAATACCTTTAAGAT
GGTAGTTCAAACCTCCATATTTTCTTACCAAGTCTTGCAGAGTTCTTATA
CCGGTTTATACAGTCCCCGAGCGAAACAGTCAAGCCGGTTCGTGGATCCT
TATAATCCCGGAGAACTAATGAGAGAatgaaaatcatcctaaaataccAA
GTAAATTATTGACTCCATCCATTTAGTTTTACGAAATACTTCAttcatgt
ttcatttttcttttcccaGGAGAGTTCAATCGCATTTATAAGGAGAAGAA
GGAGTTGGCACAAATGCTATCATTGAAAGCATTCATCTCGACGACGTGTA
TGGCACTCGCACCATGCACACCTTTGTTTTTCTATGGCATTCATTTCCAA
ATCGGTTCGTGGAGAATCAGTCAAGATAATTTCATTGGCATATTCCTTGC
TTCCATTACATCATGCATGTGGATCTTCTCTTATTTCGGGCTACACAATT
TGACCAAAGATCCGGAAAGTCCTTTCTCTGATTTTAACAAGAATAATAGT
AATGCAAGGATATCCAATGAGGACAAACTATGGACAACAAAGGAAATTGT
AAAGGATAGATATCTAATGTTATTGTTGGTCGCTGAAGGGTTTCTAGCTT
TTCAATACTTTCAAATGGAGCTCGAAATCAATTTGATGGCAGTTGAATAT
TTCCATTGGCCAATGCTGCAACTTGGTTTAATCACAAGTATTGCTATTAT
TGCATCTACTGGAACTTTGTATTTGACTCAGAAGAAGCTCATGGGATCTG
CTTTGAATATATTATTTCTCTATGTTGTTGGTTTGGTAATTATTGGAGTT
TTAGAATCCATTATTTTATTTGGTACTGTTACAAAGTTCGATAAACCATT
GCAGCATGTAGTTATCTTCACCACCTTATTCTTCAACATCGTTCAGGGTT
TCGGATCGACAGTTTACTGTCAATGGTTGATGTTCTCCATAACTCCTTCA
CATTCCTCGAGTATCATCGAATCCCATCGATATATCATCGCCAGAGCTTT
GGCGTGTTTGGCTTTTTTTACTGCCAGTTatgtttatgatattttgaagT
ATATAATTCCAGTCTATAGTTTAATtacttatattttaattttgttattg
ttgtcaAATCGGTTTCACTAtgtggaaagaaaaattatcaagtGATAAAA
AAC Coding sequence (CDS) from alignment at sc0000049:212664..214916+ >TCONS_00004852 ID=TCONS_00004852|Name=TCONS_00004852|organism=Clytia hemisphaerica|type=CDS|length=2694bp|location=Sequence derived from alignment at sc0000049:212664..214916+ (Clytia hemisphaerica)
tttggTTGGCTGTTTATGAACAGAGTGTTGAACAAGTGTTTTAGAAACAT
GCATTTGACATGGAAATTAAAGCGAAAGCTAACAGTATCGATTGGTATAA
TATACCGATGTCTTTATTGCTTTGAGTACTCATCGACTGCAATTTCTGCT
TTATATTactataaaaaatctttcaatgtCGAAAATCCTAAATTTTATTA
TGGATGCTCAATGGCAGCAATATTTCTCAGCGCTATTATTTCAAACTACA
TATGTGGACGAGCAATGGATAAGACAAGAGATTTAAGGAAGATTGTATTG
ACTTTATCGTTATTTAACATTATTGGTAATCTAACATATACACTGACTTG
GTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGTGTGTGGTATTGCAACTG
GAATTGGTGCTGCAGTTACAGGAGAGTTCAATCGCATTTATAAGGAGAAG
AAGGAGTTGGCACAAATGCTATCATTGAAAGCATTCATCTCGACGACGTG
TATGGCACTCGCACCATGCACACCTTTGTTTTTCTATGGCATTCATTTCC
AAATCGGTTCGTGGAGAATCAGTCAAGATAATTTCATTGGCATATTCCTT
GCTTCCATTACATCATGCATGTGGATCTTCTCTTATTTCGGGCTACACAA
TTTGACCAAAGATCCGGAAAGTCCTTTCTCTGATTTTAACAAGAATAATA
GTAATGCAAGGATATCCAATGAGGACAAACTATGGACAACAAAGGAAATT
GTAAAGGATAGATATCTAATGTTATTGTTGGTCGCTGAAGGGTTTCTAGC
TTTTCAATACTTTCAAATGGAGCTCGAAATCAATTTGATGGCAGTTGAAT
ATTTCCATTGGCCAATGCTGCAACTTGGTTTAATCACAAGTATTGCTATT
ATTGCATCTACTGGAACTTTGTATTTGACTCAGAAGAAGCTCATGGGATC
TGCTTTGAATATATTATTTCTCTATGTTGTTGGTTTGGTAATTATTGGAG
TTTTAGAATCCATTATTTTATTTGGTACTGTTACAAAGTTCGATAAACCA
TTGCAGCATGTAGTTATCTTCACCACCTTATTCTTCAACATCGTTCAGGG
TTTCGGATCGACAGTTTACTGTCAATGGTTGATGTTCTCCATAACTCCTT
CACATTCCTCGAGTATCATCGAATCCCATCGATATATCATCGCCAGAGCT
TTGGCGTGTTTGGCTTTTTTTACTGCCAGTTatgtttatgatattttgaa
gTATATAATTCCAGTCTATAGTTTAATtacttatattttaattttgttat
tgttgtcaAATCGGTTTCACTAtgtggaaagaaaaattatcaagtGAttt
ggTTGGCTGTTTATGAACAGAGTGTTGAACAAGTGTTTTAGAAACATGCA
TTTGACATGGAAATTAAAGCGAAAGCTAACAGTATCGATTGGTATAATAT
ACCGATGTCTTTATTGCTTTGAGTACTCATCGACTGCAATTTCTGCTTTA
TATTactataaaaaatctttcaatgtCGAAAATCCTAAATTTTATTATGG
ATGCTCAATGGCAGCAATATTTCTCAGCGCTATTATTTCAAACTACATAT
GTGGACGAGCAATGGATAAGACAAGAGATTTAAGGAAGATTGTATTGACT
TTATCGTTATTTAACATTATTGGTAATCTAACATATACACTGACTTGGTC
GCCCTGGCTTCCTGTTTTGGGCCGCTTTGTGTGTGGTATTGCAACTGGAA
TTGGTGCTGCAGTTACAGGAGAGTTCAATCGCATTTATAAGGAGAAGAAG
GAGTTGGCACAAATGCTATCATTGAAAGCATTCATCTCGACGACGTGTAT
GGCACTCGCACCATGCACACCTTTGTTTTTCTATGGCATTCATTTCCAAA
TCGGTTCGTGGAGAATCAGTCAAGATAATTTCATTGGCATATTCCTTGCT
TCCATTACATCATGCATGTGGATCTTCTCTTATTTCGGGCTACACAATTT
GACCAAAGATCCGGAAAGTCCTTTCTCTGATTTTAACAAGAATAATAGTA
ATGCAAGGATATCCAATGAGGACAAACTATGGACAACAAAGGAAATTGTA
AAGGATAGATATCTAATGTTATTGTTGGTCGCTGAAGGGTTTCTAGCTTT
TCAATACTTTCAAATGGAGCTCGAAATCAATTTGATGGCAGTTGAATATT
TCCATTGGCCAATGCTGCAACTTGGTTTAATCACAAGTATTGCTATTATT
GCATCTACTGGAACTTTGTATTTGACTCAGAAGAAGCTCATGGGATCTGC
TTTGAATATATTATTTCTCTATGTTGTTGGTTTGGTAATTATTGGAGTTT
TAGAATCCATTATTTTATTTGGTACTGTTACAAAGTTCGATAAACCATTG
CAGCATGTAGTTATCTTCACCACCTTATTCTTCAACATCGTTCAGGGTTT
CGGATCGACAGTTTACTGTCAATGGTTGATGTTCTCCATAACTCCTTCAC
ATTCCTCGAGTATCATCGAATCCCATCGATATATCATCGCCAGAGCTTTG
GCGTGTTTGGCTTTTTTTACTGCCAGTTatgtttatgatattttgaagTA
TATAATTCCAGTCTATAGTTTAATtacttatattttaattttgttattgt
tgtcaAATCGGTTTCACTAtgtggaaagaaaaattatcaagtGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004852-exon-sc0000049-1491911889:212664..213085 | TCONS_00004852-exon-sc0000049-1491911889:212664..213085 | Clytia hemisphaerica | exon |
| TCONS_00004852-exon-sc0000049-1510915933:212664..213085 | TCONS_00004852-exon-sc0000049-1510915933:212664..213085 | Clytia hemisphaerica | exon |
| TCONS_00004852-exon-sc0000049-1575043694:212664..213085 | TCONS_00004852-exon-sc0000049-1575043694:212664..213085 | Clytia hemisphaerica | exon |
| TCONS_00004852-exon-sc0000049-1491911889:213983..214916 | TCONS_00004852-exon-sc0000049-1491911889:213983..214916 | Clytia hemisphaerica | exon |
| TCONS_00004852-exon-sc0000049-1510915933:213983..214916 | TCONS_00004852-exon-sc0000049-1510915933:213983..214916 | Clytia hemisphaerica | exon |
| TCONS_00004852-exon-sc0000049-1575043694:213983..214916 | TCONS_00004852-exon-sc0000049-1575043694:213983..214916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000049 | supercontig | sc0000049:212664..214916 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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