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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004858 ID=TCONS_00004858|Name=TCONS_00004858|organism=Clytia hemisphaerica|type=transcript|length=1097bpRun BLAST on NCBI protein sequence of TCONS_00004858-protein >TCONS_00004858-protein ID=TCONS_00004858-protein|Name=TCONS_00004858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp MADPLTLLRQFNTAKKHIVEREDQIVFETISFFKTAKTNYVIGRTTPREYRun BLAST on NCBI transcript from alignment at sc0000049:254883..269905+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004858 ID=TCONS_00004858|Name=TCONS_00004858|organism=Clytia hemisphaerica|type=transcript|length=15023bp|location=Sequence derived from alignment at sc0000049:254883..269905+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:254883..269905+ >TCONS_00004858 ID=TCONS_00004858|Name=TCONS_00004858|organism=Clytia hemisphaerica|type=CDS|length=8730bp|location=Sequence derived from alignment at sc0000049:254883..269905+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004858 vs. Swiss-Prot (Human)
Match: CDC73 (Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 1.000e-77 Identity = 143/296 (48.31%), Postives = 201/296 (67.91%), Query Frame = 1
Query: 223 MADPLTLLRQFNTAKKHIVEREDQIVFETISFFKTAKTNYVIGRT----TPREYYTLEALLFLLKNVQLSHPIYVQRAGAANVPVVRFPDRKDLLAYLNGEKDQSANVDKSAPLELPISRTTAIGIKRSGEDTVSEASKKAKITDTQNKKDIQEWLQNKL-NKKEGAIITDDIKEGKSGLNEVMSIDRIAEIKRKIMTRKRGTIKGGEDYNPEVPQVVPMESNVTGI-QNFVVDADNEMTKDILNRERHLRTRTSVLQSNGKQFLKNILAILTSIKAQEEGKSNPEQQPQP-AVPV 1089
MAD L++LRQ+N KK IV + D+++F S+ K KTNYV+ T PREYYTL+++LFLL NV LSHP+YV+RA N+PVVR PDRKDLL YLNGE SA++D+SAPLE+ + R+T +KR+ ++ ++EA KK +I D + + +E L +L KEG + T+ I+ L+E MS+++IA IK KIM +KR TIK ++ ++T + Q VDA+ ++T+DI++RER RTRT++LQS GK F KNI AIL S+KA+EEG++ PEQ+P P A PV
Sbjct: 1 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQRSTQ--VKRAADEVLAEA-KKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIR----SLSEAMSVEKIAAIKAKIMAKKRSTIKTD------------LDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRA-PEQRPAPNAAPV 276 The following BLAST results are available for this feature:
BLAST of TCONS_00004858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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