TCONS_00004910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004910
Unique NameTCONS_00004910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004910 ID=TCONS_00004910|Name=TCONS_00004910|organism=Clytia hemisphaerica|type=transcript|length=1575bp
aaaatattcCCGCcaaataaacataaacatttcGAATCTTTCATTATTCG
AATCAGTCTACATTTTATTTGGAATCCTCTGTCAgtgtgtttgaaaatat
ataaaaaaacatttggaAGTTCCCATTTCTGGAGCCGGAAAAAAAGTCAA
TATTATAGAAGATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAAATCT
GAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAGCCGA
AGAAGCCCCGGCGATAAGTGGGAAAGGAAGAAAGCGACCAGCACCACATA
TTTCGCATACGTATTCAGATGACAGTGACAGcgaagaaattaaaaatgac
gAACCTTCAACTGGTGTCGAATCTGAGATGAGCACATTGTTGAATAGTTT
TGGAGCTGACATCTCAAAGACACTTTCTGCAAAACGAAAACGTTTGACAA
CTTTCACAAATGCTTCAATGAAAACAAGCAACCGAAAATACGATGAAATA
TTCACTACTCAACACGCTGAAAGAGAGAAGATGCAAGAGGAATTCGGTAA
ACAAATTTCATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGA
AAGATGCTGAAGAAAAACTCGAGGCAATCGTTCGTCAGTTACAGAAGACA
TTACAACAACAGCGGGTCGTTCAGAACCAAAGACTGAAATCATTGAGAAC
ATTACAAGATCAATACATGAAAGGCTTGAACGATCTGTCTAAGATGCACC
GTGAACAGCAATTGAACATCAATGCTGAGCTACGAAAAGATTTGTCCAAC
TTACAAAAGAAAATGATGGACGATGCGCGTCAAGAAGAAATGGTTAACGT
TCGAAAATCACTTCAAAGCATGTTATCGCAAGTTTAAACATAACCAACAA
GAACTAACAACGTTTCTTTGGAAAAAAGCTCATCTAATTTCGTGGTACTC
TAACTCCTTAAAATAACTACTATTATATTggaaaaattatcgaaaaaata
aACTGGGTTTGCTAGATCATACCAGAACTTCATGCATCTAAAGATGCTTT
ATTCTAGAATGTCATTTGGTGTGGGATAAATGCGAATGGGATGAATTAAC
TCattattgtttactttgtagaTTGTAGATAGCAGGATTATTTATTTACA
AGTTTGAGAACTTTTAATTTAACGAGAATTATATAATTAtgataagaaaa
tattgaaatatgtTACACTCTAAATTATTTgcacataaaaataaaaacct
cACTTCCAAGCTCCTAAAGTACCTTTCAGTAAGATTATTCTACCAGTTTA
CAAAAGCAGAAAATACTCTGTTGGTATTATTATACCCATTCAGCTAAACA
ATGTCTTCGATTAATCTGTTCCATATGCTGTATGTCAGGAAAATTTCACT
TATTTTCAAGAGTACATGAAAACGTTAGTTGCGGACAACAATTGATGTAC
ACAATCGATGAATACAACAGACGTTTCTTTCAACTTCCTCATCATTTCAT
CACTACCACCATCTCGAATCATATGGTACAATCCGGGATGCATCTAAATA
AAGACGAGATCCCTTTAGAGTGTCA
Run BLAST on NCBI

protein sequence of TCONS_00004910-protein

>TCONS_00004910-protein ID=TCONS_00004910-protein|Name=TCONS_00004910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MPSDKKKSRSSKSEEAFAFDMETKENAPAEEAPAISGKGRKRPAPHISHT
YSDDSDSEEIKNDEPSTGVESEMSTLLNSFGADISKTLSAKRKRLTTFTN
ASMKTSNRKYDEIFTTQHAEREKMQEEFGKQISSVFTQWEGDIQKSKDAE
EKLEAIVRQLQKTLQQQRVVQNQRLKSLRTLQDQYMKGLNDLSKMHREQQ
LNINAELRKDLSNLQKKMMDDARQEEMVNVRKSLQSMLSQV
Run BLAST on NCBI

transcript from alignment at sc0000049:344583..349498-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004910 ID=TCONS_00004910|Name=TCONS_00004910|organism=Clytia hemisphaerica|type=transcript|length=4916bp|location=Sequence derived from alignment at sc0000049:344583..349498- (Clytia hemisphaerica)
AAAATATTCCCGCCAAATAAACATAAACATTTCGAATCTTTCATTATTCG
AATCAGTCTACATTTTATTTGGAATCCTCTGTCAGTGTGTTTGAAAATAT
ATAAAAAAACATTTGGAAGTTCCCATTTCTGGAGCCGGAAAAAAAGTCAA
TATTATAGAAGATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAAATCT
GAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAGCCGA
AGGTTTGTGGTAAAATTGTTGAATTCAGGCCCGAAGTTGACGTATTTGAA
TTAATTTTATCCTGAACACAACAAATGTTTTTTATGGGAACGTGGAAATT
TTTAAAGTCTGTGGATGTTCTTAACTTTTTGAGTTTTTAAAGCCAGATCA
ACTCAGATCATATACATAAGAACAAAGAAGAGACTGGAACAAGCAAACGG
ATTGGCCAATGTTAACATAATGCCTAGGACATGTTAGCCACTCAGAGATA
TCAAAGGCTTTTTGATAGACTGGATGGTGTAATTTGGCACGCTCCATTTT
TTGGCTTTGCTTGAAGGGGATAGCAAATCTCTGTACCGTAGTCTGGTTTC
ACAATCTTGTCTGTGACATGTCTCTTTGGAGTATATGTGGTTTCCAGTTA
TGGAATTCGCAGGTTCAGGGAAGAATGAGCATTGATTGGTTAGTCATGTA
AACCTAAGTAAAAAGCCCTAAACCCGCAAACCTAGGTTTAAAAAGCGTAA
ACCTAGGTTTTAAAGCATAAACCTTGGTTTACGGAGCGCAAACCTTGGTT
TACGGAGGGCAAACCTAGGTTTAGGAAGCGCAAACCTAGGTTTAGGAAGC
GCAAACCTAGGTTTGAGATATTTTTGTGCATTTGGGCTTCCATAGAAAAT
AATTAGTGTTTCCACAAAAAACATTAGTAGCCAGCCTGAATAGCCAGCCA
ACTAACCATATGAATAAGGCCGTGTCCACTTTAGTCGTAATTTGAAAATA
TTATTTGTTGCCGGTTGGAGAGGGTTCACCAATTGGTAAAAATTTAGGTG
ATTGTAAACCCGATTGTAATCGAAGGGACTCCTCAGTGGAGAATTGTTGA
TTTCTTAGATGCCTTAGTTTGGGGTTGGTCGTCAGACAAAATATGACCCG
TCAAAGATCGTGCGACTTTCCGGACAAAAAAGTAGTCGGAGTAGACAAAC
TTCCGCGCTGATTCTATTTTGTCTGGATTCGGACTGTTTTGTTGTCGGAC
TAGTGAGATGCACCCGTTTTAGGTAACGACCGTACAGTGTGGCTAAAAAT
TAGGTTTTTGAAATCGGACCCTTATAGTGCAGAGAAAATTTAGCCAAACT
TGAGTTAATTTTGGCGAAAATTTGACCCTTATGGTGCAATTTCTTGAAAA
TTTTGGACCATTCTAGGCAAATTATGGTAAGATTTTCGAATTTTTTTACA
CCCTTAGAGTGGACTTTTCTCATCTTTACTCATTTTTACCCTTAAAGTTT
GTACAGTCAGACAGTGCACTTTGGGAAGCTTTGAAAAGGGATCCTCAAGG
GCCGCACGTGCGGTAGGTCCTTTACTTTGAGTACTTCCCGGAAAATGTTC
TCAACTTGTTCTTGATAGTTTGGCCATCGAAGCCTTATGTTCATATATAG
TTGTTGTTCTTATAAAAAACGTGTAATATAGTCGCAAATATGAGAAAATA
GCAAAGCCAAAGATGAAATGTGATATTACAAATTATCTGATGAACTGCAA
AGCCGTTTTCATCTTTTTGATTTATAGAAGCCCCGGCGATAAGTGGGAAA
GGAAGAAAGCGACCAGCACCACATATTTCGCATACGTATTCAGATGACAG
TGACAGCGAAGAAATTAAAAATGACGAGTAAGAGCTACATTTTCAAACAT
AGAAAACACAAAGAGACTTTAAAACTCTACCCGCCCGGAGGCCTTTTTTT
ATTTTTTTGACCATAGTAGTCGTCTTTCCAGTAAAAACCTTATGTGAAAA
AAAGATGGTTTTCTTTTTGATTCTTTCTAGACCTTCAACTGGTGTCGAAT
CTGAGATGAGCACATTGTTGAATAGTTTTGGAGGTAAGCAAAAATATTTT
AAAAAGTCGGAGATAAGTTCTGACACAATAAAAACATCACACTCTTTGGA
AAGGTTTGCCAGAAAGTGTACAGGCCCGATGGGACCTTCTTCACTTGATA
TATTGGCCAAAATAAATCGTCCACAATGATTGTTGAGCTATACTTGATAT
AATTTAAAATGTCAATCTATTACAAGATCCAATGCCAGCGATATTAAGTC
TCTTCATACCGACTATTCGGGAAGAATAGGGTTGTCGTTTCAAAAACAAA
TAGTCATTTCCATGCATGGCCGTTCATCGTTCATTCTCCGATCCTTCTCA
TTTTGTTTTAGCTGACATCTCAAAGACACTTTCTGCAAAACGAAAACGTT
TGACAACTTTCACAAATGCTTCAATGAAAACAAGCAACCGAAAATACGAT
GAAATATTCACTACTCAACACGCTGAAAGGTATTACGAGATATTCTCGTT
AAAAAGAGTTTTATCTGTTCTAAATCGGAAAGTTCCGTCTTAAAAGTTTG
CGTATCATTTTTGAACTTTTGTCCAATTAAGCTATATACCAAATATGTCT
TACTTTCTTTGACAGAGAGAAGATGCAAGAGGAATTCGGTAAACAAATTT
CATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGAAAGATGCT
GAAGAAAAACTCGAGGTATAAGACTTTTAACTTTATCTAGCCCAGATGCT
CGTCACACTCTTCTCGAAATGCATAAATTTATTGTTGTCCTCGTTTTCAA
ACAGATTTTATTGCTATGAAATTATATATTTAAGGCAATGTAATTACCAA
AAGGCAAACATTAACTCTAAAACAAAAGCACTTGAAATTCAAAATGTCTC
ATGAGGTGTAAACAACACAATTATCATTGTGAATATGTAATTTTATAGCA
ATGAAATCAGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGA
AGAGTGTATATTGGCAGATAAATTTATAGTAGTATGCTCCAGGAGAGACC
GGTACAGCCGCAGGGTACTAACTCTTATTTCCGAAAAATTTATCTTAGCC
ACCCCCCTCTTTAGTACCTGGCACTAGCTTTTTTGAGGAAAAAAGGGACC
CCTAACCCCCCCTATTTAGTGGCCGATTGCCATACCGTGGTGGTACACAC
GTATGAATATTACATATCAAGCTGTGAAGACAAATCTTGATTTTATTCAA
CCGAGAACAAAAGTAACCTTAGATGAAAGCCGTACCAGTCAAACCACGAA
TGAGAAAAGTATCAGGTACTTACTTAAGTATTAGCCACTAGCCAGCTATG
GGTCAGTACGCCGCGGCTGTACTCCCTGTATGAACTCAGAATGATAACAC
AGGGATGATCAATATTTTGTTTTCGTATCCAGGCAATCGTTCGTCAGTTA
CAGAAGACATTACAACAACAGCGGGTCGTTCAGAACCAAAGACTGAAATC
ATTGAGAACATTACAAGATCAATACATGAAAGGCTTGAACGATCTGTCTA
AGATGCACCGTGAACAGCAATTGAACATCAATGCTGAGCTACGAAAAGAT
TTGTCCAACTTACAAAAGAAAATGATGGACGATGCGGTATGCTTATTTCC
TTTTTCTTATAAAGAACATAGGTGGAGGGTTTGAAGGCATAGATCCCAAT
CAAAAACGTGTACTTGCTTTTTCAAAGTGACTGTATGTAATCTGGTCGGG
TCCCTCTATCCATAGACAGGAGACCCGCCCTGTATTTACATAATCTGATA
CATATATACAGGACAAGTACGAGCTGTGAGGCAAAAAAAAATTCACAGTG
GGAAATTTAGCGCTGTCCTCACTTACTAAAATAAAAACCAAATTTCAGAA
TTTACGCTTTATCTAAGTAAGTGTGACCAGTGAAAGAATAACAAATTTTG
ATTGGCTATGTTTTCAACCGTCATTAGGATCTGGGAAATTCAAACTCTCA
ACCCAAACCATGTTATATATTTTGCCATCAGTATGTATAAATAAGAAATC
ATAGCAGGGATCTCCAAGCTACTCTATCCACAGAAGATTCATTATGAAAT
GTTTTCGTTTCATTTCAGCGTCAAGAAGAAATGGTTAACGTTCGAAAATC
ACTTCAAAGCATGTTATCGCAAGTTTAAACATAACCAACAAGAACTAACA
ACGTTTCTTTGGAAAAAAGCTCATCTAATTTCGTGGTACTCTAACTCCTT
AAAATAACTACTATTATATTGGAAAAATTATCGAAAAAATAAACTGGGTT
TGCTAGATCATACCAGAACTTCATGCATCTAAAGATGCTTTATTCTAGAA
TGTCATTTGGTGTGGGATAAATGCGAATGGGATGAATTAACTCATTATTG
TTTACTTTGTAGATTGTAGATAGCAGGATTATTTATTTACAAGTTTGAGA
ACTTTTAATTTAACGAGAATTATATAATTATGATAAGAAAATATTGAAAT
ATGTTACACTCTAAATTATTTGCACATAAAAATAAAAACCTCACTTCCAA
GCTCCTAAAGTACCTTTCAGTAAGATTATTCTACCAGTTTACAAAAGCAG
AAAATACTCTGTTGGTATTATTATACCCATTCAGCTAAACAATGTCTTCG
ATTAATCTGTTCCATATGCTGTATGTCAGGAAAATTTCACTTATTTTCAA
GAGTACATGAAAACGTTAGTTGCGGACAACAATTGATGTACACAATCGAT
GAATACAACAGACGTTTCTTTCAACTTCCTCATCATTTCATCACTACCAC
CATCTCGAATCATATGGTACAATCCGGGATGCATCTAAATAAAGACGAGA
TCCCTTTAGAGTGTCA

Coding sequence (CDS) from alignment at sc0000049:344583..349498-

>TCONS_00004910 ID=TCONS_00004910|Name=TCONS_00004910|organism=Clytia hemisphaerica|type=CDS|length=5082bp|location=Sequence derived from alignment at sc0000049:344583..349498- (Clytia hemisphaerica)
CGTCAAGAAGAAATGGTTAACGTTCGAAAATCACTTCAAAGCATGTTATC
GCAAGTTTAAGCAATCGTTCGTCAGTTACAGAAGACATTACAACAACAGC
GGGTCGTTCAGAACCAAAGACTGAAATCATTGAGAACATTACAAGATCAA
TACATGAAAGGCTTGAACGATCTGTCTAAGATGCACCGTGAACAGCAATT
GAACATCAATGCTGAGCTACGAAAAGATTTGTCCAACTTACAAAAGAAAA
TGATGGACGATGCGAGAGAAGATGCAAGAGGAATTCGGTAAACAAATTTC
ATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGAAAGATGCTG
AAGAAAAACTCGAGCTGACATCTCAAAGACACTTTCTGCAAAACGAAAAC
GTTTGACAACTTTCACAAATGCTTCAATGAAAACAAGCAACCGAAAATAC
GATGAAATATTCACTACTCAACACGCTGAAAGACCTTCAACTGGTGTCGA
ATCTGAGATGAGCACATTGTTGAATAGTTTTGGAGAAGCCCCGGCGATAA
GTGGGAAAGGAAGAAAGCGACCAGCACCACATATTTCGCATACGTATTCA
GATGACAGTGACAGCGAAGAAATTAAAAATGACGAATGCCATCAGACAAA
AAGAAGAGTCGTTCAAGTAAATCTGAAGAAGCATTTGCTTTTGATATGGA
AACTAAAGAAAATGCACCAGCCGAAGCGTCAAGAAGAAATGGTTAACGTT
CGAAAATCACTTCAAAGCATGTTATCGCAAGTTTAAGCAATCGTTCGTCA
GTTACAGAAGACATTACAACAACAGCGGGTCGTTCAGAACCAAAGACTGA
AATCATTGAGAACATTACAAGATCAATACATGAAAGGCTTGAACGATCTG
TCTAAGATGCACCGTGAACAGCAATTGAACATCAATGCTGAGCTACGAAA
AGATTTGTCCAACTTACAAAAGAAAATGATGGACGATGCGAGAGAAGATG
CAAGAGGAATTCGGTAAACAAATTTCATCAGTTTTTACGCAATGGGAAGG
AGATATCCAAAAATCGAAAGATGCTGAAGAAAAACTCGAGCTGACATCTC
AAAGACACTTTCTGCAAAACGAAAACGTTTGACAACTTTCACAAATGCTT
CAATGAAAACAAGCAACCGAAAATACGATGAAATATTCACTACTCAACAC
GCTGAAAGACCTTCAACTGGTGTCGAATCTGAGATGAGCACATTGTTGAA
TAGTTTTGGAGAAGCCCCGGCGATAAGTGGGAAAGGAAGAAAGCGACCAG
CACCACATATTTCGCATACGTATTCAGATGACAGTGACAGCGAAGAAATT
AAAAATGACGAATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAAATCT
GAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAGCCGA
AGCGTCAAGAAGAAATGGTTAACGTTCGAAAATCACTTCAAAGCATGTTA
TCGCAAGTTTAAGCAATCGTTCGTCAGTTACAGAAGACATTACAACAACA
GCGGGTCGTTCAGAACCAAAGACTGAAATCATTGAGAACATTACAAGATC
AATACATGAAAGGCTTGAACGATCTGTCTAAGATGCACCGTGAACAGCAA
TTGAACATCAATGCTGAGCTACGAAAAGATTTGTCCAACTTACAAAAGAA
AATGATGGACGATGCGAGAGAAGATGCAAGAGGAATTCGGTAAACAAATT
TCATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGAAAGATGC
TGAAGAAAAACTCGAGCTGACATCTCAAAGACACTTTCTGCAAAACGAAA
ACGTTTGACAACTTTCACAAATGCTTCAATGAAAACAAGCAACCGAAAAT
ACGATGAAATATTCACTACTCAACACGCTGAAAGACCTTCAACTGGTGTC
GAATCTGAGATGAGCACATTGTTGAATAGTTTTGGAGAAGCCCCGGCGAT
AAGTGGGAAAGGAAGAAAGCGACCAGCACCACATATTTCGCATACGTATT
CAGATGACAGTGACAGCGAAGAAATTAAAAATGACGAATGCCATCAGACA
AAAAGAAGAGTCGTTCAAGTAAATCTGAAGAAGCATTTGCTTTTGATATG
GAAACTAAAGAAAATGCACCAGCCGAAGCGTCAAGAAGAAATGGTTAACG
TTCGAAAATCACTTCAAAGCATGTTATCGCAAGTTTAAGCAATCGTTCGT
CAGTTACAGAAGACATTACAACAACAGCGGGTCGTTCAGAACCAAAGACT
GAAATCATTGAGAACATTACAAGATCAATACATGAAAGGCTTGAACGATC
TGTCTAAGATGCACCGTGAACAGCAATTGAACATCAATGCTGAGCTACGA
AAAGATTTGTCCAACTTACAAAAGAAAATGATGGACGATGCGAGAGAAGA
TGCAAGAGGAATTCGGTAAACAAATTTCATCAGTTTTTACGCAATGGGAA
GGAGATATCCAAAAATCGAAAGATGCTGAAGAAAAACTCGAGCTGACATC
TCAAAGACACTTTCTGCAAAACGAAAACGTTTGACAACTTTCACAAATGC
TTCAATGAAAACAAGCAACCGAAAATACGATGAAATATTCACTACTCAAC
ACGCTGAAAGACCTTCAACTGGTGTCGAATCTGAGATGAGCACATTGTTG
AATAGTTTTGGAGAAGCCCCGGCGATAAGTGGGAAAGGAAGAAAGCGACC
AGCACCACATATTTCGCATACGTATTCAGATGACAGTGACAGCGAAGAAA
TTAAAAATGACGAATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAAAT
CTGAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAGCC
GAAGCGTCAAGAAGAAATGGTTAACGTTCGAAAATCACTTCAAAGCATGT
TATCGCAAGTTTAAGCAATCGTTCGTCAGTTACAGAAGACATTACAACAA
CAGCGGGTCGTTCAGAACCAAAGACTGAAATCATTGAGAACATTACAAGA
TCAATACATGAAAGGCTTGAACGATCTGTCTAAGATGCACCGTGAACAGC
AATTGAACATCAATGCTGAGCTACGAAAAGATTTGTCCAACTTACAAAAG
AAAATGATGGACGATGCGAGAGAAGATGCAAGAGGAATTCGGTAAACAAA
TTTCATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGAAAGAT
GCTGAAGAAAAACTCGAGCTGACATCTCAAAGACACTTTCTGCAAAACGA
AAACGTTTGACAACTTTCACAAATGCTTCAATGAAAACAAGCAACCGAAA
ATACGATGAAATATTCACTACTCAACACGCTGAAAGACCTTCAACTGGTG
TCGAATCTGAGATGAGCACATTGTTGAATAGTTTTGGAGAAGCCCCGGCG
ATAAGTGGGAAAGGAAGAAAGCGACCAGCACCACATATTTCGCATACGTA
TTCAGATGACAGTGACAGCGAAGAAATTAAAAATGACGAATGCCATCAGA
CAAAAAGAAGAGTCGTTCAAGTAAATCTGAAGAAGCATTTGCTTTTGATA
TGGAAACTAAAGAAAATGCACCAGCCGAAGCGTCAAGAAGAAATGGTTAA
CGTTCGAAAATCACTTCAAAGCATGTTATCGCAAGTTTAAGCAATCGTTC
GTCAGTTACAGAAGACATTACAACAACAGCGGGTCGTTCAGAACCAAAGA
CTGAAATCATTGAGAACATTACAAGATCAATACATGAAAGGCTTGAACGA
TCTGTCTAAGATGCACCGTGAACAGCAATTGAACATCAATGCTGAGCTAC
GAAAAGATTTGTCCAACTTACAAAAGAAAATGATGGACGATGCGAGAGAA
GATGCAAGAGGAATTCGGTAAACAAATTTCATCAGTTTTTACGCAATGGG
AAGGAGATATCCAAAAATCGAAAGATGCTGAAGAAAAACTCGAGCTGACA
TCTCAAAGACACTTTCTGCAAAACGAAAACGTTTGACAACTTTCACAAAT
GCTTCAATGAAAACAAGCAACCGAAAATACGATGAAATATTCACTACTCA
ACACGCTGAAAGACCTTCAACTGGTGTCGAATCTGAGATGAGCACATTGT
TGAATAGTTTTGGAGAAGCCCCGGCGATAAGTGGGAAAGGAAGAAAGCGA
CCAGCACCACATATTTCGCATACGTATTCAGATGACAGTGACAGCGAAGA
AATTAAAAATGACGAATGCCATCAGACAAAAAGAAGAGTCGTTCAAGTAA
ATCTGAAGAAGCATTTGCTTTTGATATGGAAACTAAAGAAAATGCACCAG
CCGAAGCGTCAAGAAGAAATGGTTAACGTTCGAAAATCACTTCAAAGCAT
GTTATCGCAAGTTTAAGCAATCGTTCGTCAGTTACAGAAGACATTACAAC
AACAGCGGGTCGTTCAGAACCAAAGACTGAAATCATTGAGAACATTACAA
GATCAATACATGAAAGGCTTGAACGATCTGTCTAAGATGCACCGTGAACA
GCAATTGAACATCAATGCTGAGCTACGAAAAGATTTGTCCAACTTACAAA
AGAAAATGATGGACGATGCGAGAGAAGATGCAAGAGGAATTCGGTAAACA
AATTTCATCAGTTTTTACGCAATGGGAAGGAGATATCCAAAAATCGAAAG
ATGCTGAAGAAAAACTCGAGCTGACATCTCAAAGACACTTTCTGCAAAAC
GAAAACGTTTGACAACTTTCACAAATGCTTCAATGAAAACAAGCAACCGA
AAATACGATGAAATATTCACTACTCAACACGCTGAAAGACCTTCAACTGG
TGTCGAATCTGAGATGAGCACATTGTTGAATAGTTTTGGAGAAGCCCCGG
CGATAAGTGGGAAAGGAAGAAAGCGACCAGCACCACATATTTCGCATACG
TATTCAGATGACAGTGACAGCGAAGAAATTAAAAATGACGAATGCCATCA
GACAAAAAGAAGAGTCGTTCAAGTAAATCTGAAGAAGCATTTGCTTTTGA
TATGGAAACTAAAGAAAATGCACCAGCCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002778XLOC_002778Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004910-proteinTCONS_00004910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004910-exon-sc0000049-1575043694:349247..349498TCONS_00004910-exon-sc0000049-1575043694:349247..349498Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1575043694:347622..347721TCONS_00004910-exon-sc0000049-1575043694:347622..347721Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1575043694:347416..347468TCONS_00004910-exon-sc0000049-1575043694:347416..347468Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1575043694:346970..347087TCONS_00004910-exon-sc0000049-1575043694:346970..347087Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1575043694:346734..346833TCONS_00004910-exon-sc0000049-1575043694:346734..346833Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1575043694:345813..346016TCONS_00004910-exon-sc0000049-1575043694:345813..346016Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1575043694:344583..345330TCONS_00004910-exon-sc0000049-1575043694:344583..345330Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:349247..349498TCONS_00004910-exon-sc0000049-1510915933:349247..349498Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:347622..347721TCONS_00004910-exon-sc0000049-1510915933:347622..347721Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:347416..347468TCONS_00004910-exon-sc0000049-1510915933:347416..347468Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:346970..347087TCONS_00004910-exon-sc0000049-1510915933:346970..347087Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:346734..346833TCONS_00004910-exon-sc0000049-1510915933:346734..346833Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:345813..346016TCONS_00004910-exon-sc0000049-1510915933:345813..346016Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1510915933:344583..345330TCONS_00004910-exon-sc0000049-1510915933:344583..345330Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:349247..349498TCONS_00004910-exon-sc0000049-1491911889:349247..349498Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:347622..347721TCONS_00004910-exon-sc0000049-1491911889:347622..347721Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:347416..347468TCONS_00004910-exon-sc0000049-1491911889:347416..347468Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:346970..347087TCONS_00004910-exon-sc0000049-1491911889:346970..347087Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:346734..346833TCONS_00004910-exon-sc0000049-1491911889:346734..346833Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:345813..346016TCONS_00004910-exon-sc0000049-1491911889:345813..346016Clytia hemisphaericaexon
TCONS_00004910-exon-sc0000049-1491911889:344583..345330TCONS_00004910-exon-sc0000049-1491911889:344583..345330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:344583..349498 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168828	0.161265	0.192562	0.174012	0.389688	0.132781	0.380822	0.346529	0.526462	0.263716	0.870751	0.722395	0.406745	0.290464	0.426228	0.637159	0.501274	1.04126	0.405359	0.433806	2.16559	0.880233	0.572083	0.650568	49.0256	60.9403	0.499689	0.379509	0.973614	0.369392
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006888XLR/SYCP3/FAM9_dom
Blast
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BLAST of TCONS_00004910 vs. Swiss-Prot (Human)
Match: SYCP3 (Synaptonemal complex protein 3 OS=Homo sapiens GN=SYCP3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.023e-30
Identity = 86/226 (38.05%), Postives = 136/226 (60.18%), Query Frame = 3 
Query:  207 AFAFDMETKENAPAEEAPAISGKG---RKRPAPHISHTYSDDSDSEEIKNDEPSTGVESEMSTLLNSFGADISKTLSAKRKRLTTFTNASMKTSNRKYDEIFTTQHAEREKMQEEFGKQISSVFTQWEGDIQKSKDAEEKLEAIXXXXXXXXXXXXXXXXXXXKSLRTLQDQYMKGLNDLSKMHREQQLNINAELRKDLSNLQKKMMDDARQEEMVNVRKSLQSML 875
            A+ F+ E K++    E   I GK     KR     S    +D              +  E+  +L   G DI+K L AKRKRL  +T AS+KTSN+K + ++ TQ  +R+K+ +E+ +Q  ++F QW+ D+QK+++ EEK+  + RQ QK LQQ R+VQ+QRLK+++ L +Q++K + +L K H         E +K+++ LQKK+M + +Q+E+ +VRKSLQSML
Sbjct:   24 AYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVED--------------MGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSML 235
The following BLAST results are available for this feature:
BLAST of TCONS_00004910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYCP33.023e-3038.05Synaptonemal complex protein 3 OS=Homo sapiens GN=... [more]
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