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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004913 ID=TCONS_00004913|Name=TCONS_00004913|organism=Clytia hemisphaerica|type=transcript|length=2031bpRun BLAST on NCBI protein sequence of TCONS_00004913-protein >TCONS_00004913-protein ID=TCONS_00004913-protein|Name=TCONS_00004913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp MLNAWRKFTKKQDEKPVFPMGVAPVDQNMQRKYAKGVQYNMKLIIKGDRNRun BLAST on NCBI transcript from alignment at sc0000049:365568..378885- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004913 ID=TCONS_00004913|Name=TCONS_00004913|organism=Clytia hemisphaerica|type=transcript|length=13318bp|location=Sequence derived from alignment at sc0000049:365568..378885- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:365568..378885- >TCONS_00004913 ID=TCONS_00004913|Name=TCONS_00004913|organism=Clytia hemisphaerica|type=CDS|length=29700bp|location=Sequence derived from alignment at sc0000049:365568..378885- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004913 vs. Swiss-Prot (Human)
Match: RABL6 (Rab-like protein 6 OS=Homo sapiens GN=RABL6 PE=1 SV=2) HSP 1 Score: 311.227 bits (796), Expect = 1.655e-94 Identity = 145/284 (51.06%), Postives = 200/284 (70.42%), Query Frame = 3
Query: 45 MLNAWRKFTKKQDEKPV----FPMGVAPVDQNMQRKYAKGVQYNMKLIIKGDRNTGKSVLLQRLSGNKFKEDYIPTQEIQVANVNWNYQGNGDVVKTEVWDIVDKSKKKRTPSGSLKITNDDTESEVKESNPIDGIALDAEFIDVYKGTHGVFLTLDMTKAWTWQYVQRELTKIPLHIPVLILANFRDMGDHRVVEADEILAYIEHLDRPSGSAEVYFTESSMKDSFGLQYVHNFLNMPFLMLQRETLMRQLEANTLEIDDVRERLSFNASSEQQNYDLFKEML 884
M +A +K D+ P P G+ ++Q +QR++AKGVQYNMK++I+GDRNTGK+ L RL G F E+YIPTQEIQV +++W+Y+ D+VK EVWD+VDK K K+ G LK+ ND E+E + +ALDAEF+DVYK +GV + D+TK WT+ Y+ REL K+P H+PV +L N+RDMG+HRV+ D++ +I++LDRP GS+ + ESSMK+SFGL+Y+H F N+PFL LQRETL+RQLE N L++D E LS +E QNY +F EM+
Sbjct: 1 MFSALKKLVGS-DQAPGRDKNIPAGLQSMNQALQRRFAKGVQYNMKIVIRGDRNTGKTALWHRLQGRPFVEEYIPTQEIQVTSIHWSYKTTDDIVKVEVWDVVDKGKCKKRGDG-LKMENDPQEAESE-------MALDAEFLDVYKNCNGVVMMFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHKFFNIPFLQLQRETLLRQLETNQLDMDATLEELSVQQETEDQNYGIFLEMM 275 The following BLAST results are available for this feature:
BLAST of TCONS_00004913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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